NONHSAT134620
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134620 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5222 nt |
Genomic location |
chr9-:125874493..125879825 |
Exon number |
2 |
Exons |
125874493..125878096,125878208..125879825 |
Genome context |
|
Sequence |
000001 CCTGGAGTTT GCTGTCTTCC CTCCAAGTTG GACCCGTGTA TGGTAAGCCC TGCTTGGATG GCTTTGGGGT CTCTAAATTG 000080
000081 CTGCCTGTGA ACCACCCTGT TGAGCGTGTT GGATTCTTCT GCTGCTGTAA CCACTTTACC AGCTCCTGGG CTAATGAATG 000160 000161 ACAGCTGGGT CTCTGCTCAG GCGTGGGTGG GTGCGGGGAT GGCTGCGGGA TCCTTTTCAG GACAAAGTAT TCCTCATCCA 000240 000241 CCCCAAGTCA TCCTCTTTCT GGGCACTTGG CAATGTTTCT GTGCACCCTG CTGTAATCCT GGAGGGGAGC AGGAAAAAGG 000320 000321 AACCTTTGAA TCCCAGGCTG TCGTGTTCTA GAGCATGACT GTGTCAGGGA GAATGAGCGC CTGGCATTCA TAGAACACAG 000400 000401 TCCTCTCTCA GGCCCTTTCC CGTTTGCCAT TTCATGACTT GCTGTACTGG TGGCCCTTGG AGAAGCAGCA GTGCATAGAT 000480 000481 CGTTGTTCCC ACCTTGCAGA CAGGGAGAGT AGAGCCCAGA GATCTCTCCA AACCACACTG CTTATTTGTG GCAAAGCATT 000560 000561 GTGGCCCCTA ATGAGTTTTT AACCACCAGA AGAAATAACA TTTCTTAAGA CTGTTTTTAG AGGTAACAGC AGCCCTTTCT 000640 000641 GAGGAATTAG TTTTGAATTT CACCACAACT GGAATTAGAA ATTTTCTCCT TTTACAGATG AGGAAATAGA TGCTTAGATA 000720 000721 AGGTGACTTG CCCCAAATTA TAGTGCGGTG AGTGGCGGCG CTCACCCCGT CTGAGGCTAT GCTGTGTGCA GGTGGTTTGC 000800 000801 GTCGCTAGTA GGCACCAATG TCCGTTCTGT CTTCCAAGCC CACTTGGCAG CAGTGGCTTC TCTCTCTGTG ATGTGTTCGG 000880 000881 CTCACCTTTC CTGTAGGCTT CTGGGCTATC CCCTGTGCGC CTTGAAACCA AGCAAAAACC AACCCACATC TCCCTGATCC 000960 000961 TTCCTTAGCC TCCTAAAATC CAGACTTTCT GGGCTCGTTC TTTTTCTGTT CCTTTGTTAG TGTGCTACTG GGCAAGGTGA 001040 001041 CCAACTGGTC AGCCCTGGGC CAGGCAGCCT GTTTTTTTGT TTTGTTTTCT TTTTTGCCAG CTACACAGTT GGGGTTAATT 001120 001121 TCTACAGACC ATCATTTTAT ACTGTAACTG AACCCTATAA TAAAGTGCAA ATTCAGTAAT TGCTACTTGG AGAGCTCCTC 001200 001201 AGGGGTGGGA AGGAGGACAG GGGATGTGCT GTTGGAAGTA TGTGTTTTAT GTTCCGCCTC ATCCACACTT TGGTTTTTGG 001280 001281 CCACATCCTC CGTTCCTGGC TCGGCCTTCA AACATGTGCT CTAACCCATG GGATCACCGT CACAGTAACA CATTTTCCAG 001360 001361 AGCAATCTGG TGTTGGGATC CCCTTGGATT CTTCCATCAT GAGACTTCTC GGAAGTCTCA GCTTTCTAAA AATCCCTCAT 001440 001441 TCCTGCAGAG GCTACGTTAA AGGAATATGG TAGCCATCAT CTGGGAGGTA AAAAACCTAT GGAAATTGGC ACCTGGGGAA 001520 001521 CTCAGGAAAG CTGAAAGCAC CTTGAAATGA GATGGAAGGA CCAGAAGGTT AAGGCTGGTG AAGAGGAGAC CTGGAGAGAA 001600 001601 CGTGGGCACT CCTGCCAGAC GCAGCCTTGA GAGAGCAGCT GAGGTGCGAC ATGAGCTCCC TGTAACCAGC ATGTTCAAGC 001680 001681 AAGAAGCCGG TTGTGTGGAC GGCAAAGAGG AAATGCTGTG GAATGTCAGT TTGGACGAAC TCTGATGTTG ACTGGTGATG 001760 001761 CTGCCAAGAC CATGTCTCCC TTCTTGGGCA CGTAGATTTA TTGAGAAAAA CCATTCACTG TCACCTACTG CTTCTTACCA 001840 001841 GGCTCTGTGA TGGGGGAGAA GGAGCAGTTG GAGAAAATGT CAGAATCTGC AGCTTAGACA ACTGAGTAGA AGGTGAAATC 001920 001921 ATTGACCCAG ATGGAGAGTA CAGGGAGGGG AAGAAAGAGG TGCAGAGGAT TTGAACAGAA TGAGAGTCCT CCTCTGTGCA 002000 002001 GGGAGAAAGG CTTCAGTGGG TCTCCCCCTC CCTGCTAGGG ATCCTCCTTG CCAGCCCTGG GCTGGGCGCT GGCAGGCCCG 002080 002081 TTCCCAGGTC TCCCGCCGAG GGCAGGAGAG GAGCCAGGCC TCAGGAGAGA AGTGCTTACT GAGTAATTTA CCAAGAGCGA 002160 002161 TAGGCTTCCC ACTGAGCCAG ACGGGATCCC CAGGAGGGGA GTCAGAGGCG GGCCTGGCAT GCATGCACAG AGAGAGTGTG 002240 002241 CCCACTTGGG GAGTGTGAAG GGCCTTGCTG TGGGACCCGA GAGGATGAGC AGAGTCAAGT GGCAGGTGGG ACACACAGTC 002320 002321 TGCAGTCACT TCTTAAAAGG CCCTGGGTGG TGTGTCCTTC AATGATGACC ATTGTCCACA ATAGTGAGTT CCAGAGGGTC 002400 002401 GATTGGGACA GTTGGATAGC CAAGGACCAG AGTCAGGAGG CAAGGCTGAT GAGCAAGAGG CTGTTGCCAT TGGCCAGGCG 002480 002481 AGGCGTGAGG GAGGCTGATG GAGCGCAGCA GCAGAGGGAT GGAGAGGCAG GAATGGCATC TCCTCACAGG CCAGGCTCCT 002560 002561 CTGCCGGATT GGGTAGGGAC GGGAAGATGA TGGCCCCCAA CCCTGGGCCA AGGAACAATA GCACCCATCC GGGGGCGGGG 002640 002641 GACCTGCTGG AGTACTTCTC CTGGACCACT GCTCAGTGGG CAATAGAGGG AACAATGGTG TTTCTGACCA GGACGGGGGA 002720 002721 AGGCAGGGGA ATGGAGGAAG ATACTGACAG GGTACAGAGG AGGTAGAATG GAGCGAGGGC CATCTCCACC GGGCTAGGAA 002800 002801 ATGGGGCTTT GGTGGGCCAC ACTCCATTGT GCTGGAGCAC TCTGGCATCT CCATTGGCAG TGGGGAGGGG CTTGTGACCT 002880 002881 ATCAGCATCT TCACCCTTTC TGAGTTTCCG CCGGGCTGGG CTCTCCAGCC AGGAGTCACA GGTACCGGGT GGTTGTTCAT 002960 002961 GCTGAGGCCT TTTGCTTGGC AAAAAGTTAA TCCATTTGTG TTCATTTTTA ACCTAAGCAA GGGTTGGAGC TTGTTGGATT 003040 003041 CAGCATCTGT GGAACACAGT CTGTAGCCCA TGGGAAGACG TGGACATTCT TTCCCAAGTT CTTGAAGGAC GGAAAGGACC 003120 003121 ATGAACTTGT GAGGTGACCG GAGGATTGGT TTTGGGTGTC AGTTTTGTGT CTGTCCCAGT GCTGCCACTT TTGCTTTGAA 003200 003201 ATGGACGGGG AGAGCTGAAG GCCAGCATGG GTTTCTGCAC CTGTTTCCTA CAGCTCTGCT GGGGACTGTG GCTCAGGTGG 003280 003281 CAGCTGTGGA CACGGATCCT GTCAGCCTTT GGGTGGCCAG AGCTCCAAGG CCAGGTGTCT CTTAGCTGCA AGCAGCCTTC 003360 003361 ACTGTTAATC AACAGGCTAC ACAAATCTCA CCTCTAAAGA GGTGAAATGT GAAAATATAT GGGAAGCGCT GCCTTAGCCC 003440 003441 TGTGTCCACA AATCCTTTCT GTAAAGGGCC AGATAGCATT TCAGGCTTTA TGGACCATGT GGTCTCTGCC ACAACTGCTC 003520 003521 AGCTCTGCCA CTGTAGCACA AAAGCAGCCA GAGACAGTGC GTAAATAGAT AGCATGGCTG TGTTCTGATG AAGCTTCACT 003600 003601 TACAAATACA CAGGGCTGTA GTTTGCCAAC CCCTGCAAAG TAGGGAGTAT TTTGCCAAAC TTGGCTGTAT TTCACCAACC 003680 003681 CCTTAGACTA TAGAGATGAC TTACCCTTTG GCTTAATCAT GACTGGAAAC TTCCTTCCCA TCCACTGCCT GGATCCATCC 003760 003761 ACCTCCCCAC AAAGGCTTCC TGAGCATCTC CTCCGTGTGA GCACTGGCTC AATGCACAGG ACGATGTAGT TCCTGCCCAT 003840 003841 ATGGAACTTA GGTTTTGAGT GACACGTGGG ACATTGGAAG AGGAGAGCAG GTGGCTAAAG AGCATCATAC AGAACAGGGC 003920 003921 TCAGGGAAGT CCCAGGTGAT AGAATCTCAA AGAGAAGGGC TGAGGGTGAA TCAGGAAAGC CCTGAAGGCA GGCAGCTCCG 004000 004001 GAGTCGGGTT TAGACGAGGA GGCTGCAGTT CTCCAGGAAG GGAAGCAGGA CCAGATAACG GATGAGATTG TGTCAAACAA 004080 004081 TGAGGAGGCC TGCATAGTCA CACAGGCGCA TGAGGTCTGC TCGTAAAGGA CCAGGAGGGC CAGGCTCAGG GGTGTGGACT 004160 004161 GGATTCTCTG GGCTGTAGGG AGCCACTGGA CAGCTGTGCT CAGGAGGGTC ATGTGATCAC AAATGCTTAT TAGAAATGTC 004240 004241 ACTGGCTATG GAGGACCATG TCTGTGGTTG TAAGTTACGC CTTTCCGTTT AGTCTGGACT TCCTGGTCAA GGTACTTTTG 004320 004321 GTATTAGAGT GGGGAAGAGA GGCCCAGAGA GTTGGACAGG TTTTCTGACC ATTGGCTTAT AGTCAGTGAG CACCCCACCT 004400 004401 TTATTTTGAC ATGACAGAGC TTTACAGAAT CTTCCTTCTT CAGGCGTTTT CTTTCCTGCT ATCCTAAAGA TTCACGTACG 004480 004481 AGGGCAGGAT AAATGAAACA TTCTGTCTCC AATCTAAGTT CGGCTTGGGG CCTCAGAATA TGAAGGTAAA GGGGCGGGGA 004560 004561 CGGACTGACT GCCCCTTGCT TCAGAATCAA GTCACATGGC GGGAACGCTC TATGGAGCAG ATTGCTTCCT TTGTACATGC 004640 004641 CCTAGGCCCG TGTTCAGCAG GCCTCAGAGA AGCAGAGGTG CTGGCCTCTC GTCTCCAGAG GCTGCCAGCT ACTAAGGGAG 004720 004721 GTGGAAGCAA CTACCCCTGG GGGTGGACTG CTCTGGGCCG GGCCCGACGT CAGGCGTAGG GGACTGAGGT GAATCAGACG 004800 004801 TGGTGGCTGC ATTGAGGAAT GCTCAGTGTA GTTGGGGTGT TTGTAGCGCT TTCTGCTGAG CATGGTCTTT CCTCTCAGAG 004880 004881 GGGTTTCTAG GCACGTTGAA GGGAGCTGCC GTTCAGAGCA TCGGAGAGGT GCCAGGGACG TGAGCTGCTG CCAGTCTGAC 004960 004961 GTGAACAGAA GGTGGGAATA GCTGGCGCTG CCGTGCGTTG ATAGGAGCAC AGTGTCCGCT GCGAAGGGGC GGCTAGGGCT 005040 005041 GGAGAAAGAT GGCCTGATAG AAGCGCCTCC ACAGGCGCTG ATTCAGCGAA GCCCCAGCAG CCCCGCGGGG CAGGCGAGGA 005120 005121 TCACATGCAG CTCGGAGAAG AGGAGGCACT TGCCCCTCTG CCTGAGCTGG GAGGTGGTGG CCAGCTGCAC ACAGGGCTGT 005200 005201 CCCAGGATGC TGACGAGGCG GG |
Predicted Small Protein
Name | NONHSAT134620_smProtein_1979:2257 |
Length | 93 |
Molecular weight | 9839.1725 |
Aromaticity | 0.0434782608696 |
Instability index | 74.9347826087 |
Isoelectric point | 10.1276245117 |
Runs | 15 |
Runs residual | 0.0278385986863 |
Runs probability | 0.0404816581288 |
Amino acid sequence | MRVLLCAGRKASVGLPLPARDPPCQPWAGRWQARSQVSRRGQERSQASGEKCLLSNLPRA IGFPLSQTGSPGGESEAGLACMHRESVPTWGV |
Secondary structure | LEEEEELLLEEEELLLLLLLLLLLLLLLLHHHHHHEELLLLLEEELLLLLLELLLLLLLL LLLLLLLLLLLLLHHHHHHHEELLLLLLLLLL |
PRMN | - |
PiMo | - |