NONHSAT134980
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134980 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2449 nt |
Genomic location |
chr9+:131377509..131386656 |
Exon number |
4 |
Exons |
131377509..131377698,131382151..131382419,131382579..131382658,131384747..131386656 |
Genome context |
|
Sequence |
000001 TCTTTCAAGT ACAAAAGAAT GGCTACTCAG TAAAATTAAC TTTCACTGCC TTTTTAAGGA CATTTTTAAG TGAAACAGCA 000080
000081 TTTTTTTTTC ACTGTGAGTG GGTGGCAGTG AAGAATCCAC TTCTGCTAGT AGTTTGCCAC TGCCTTGATT TGAGCTAAAG 000160 000161 CACCAGCATG TCCCCTCCTC CATTGCTTTT CATCTGCAGC TGTCACTGGA GGTCCTTCAC GCTCCTGCAT TCAGGCAGAG 000240 000241 CGTGGCTGGG CTGAGAGATC CATCACACAC TGGCAGCTGA GCCTGATTGT CATCCAGCCT GGACATCTCT GTTCCCCTCC 000320 000321 ACATGGCCTG TTGTCCTCAA GCTGGCTAGA CCAACCTCCT TCAGCAGCAT TCAGACAGGC AAAGGCAGGA GCTGCAAGAT 000400 000401 GTCTGCGGCC TCACACATCA TCCTCACTGC CTTCTGGCCA AAGCAAGTCC CAAGGCAGCC TCCCGCTGGT CAGGGTGATT 000480 000481 CAGGTAGAAT TTAGATGGTC AGTCATTTCC CATCCTCTGC ATAGTTGAGT TCCCTGGAAT TTGTATTGTT AGTAGAGATG 000560 000561 GGGTTTCTCC ATGTTGGTCA GGCTGGTCTC GAACTCCTGA CCTCAGGTGA TCCGCCCTCC TCGGCCTCCC AAAGTGCTGG 000640 000641 GATTACAGGC ATGAGCCACC ACCCCCGGCC AGCGAGCCGG CTGCTTTGTC CTCAGCGACA GCCTGTTTCC TCTTTGAATT 000720 000721 TATCTTTCAA TTCTTTTTTC TTTTTATTTT CCCCCTTTCC ACAGGTGTTA AAGAATTTCT CTTTAAATTC AATGTGACTT 000800 000801 GTAGTATGGT TTATTTATTT ATTTATTTAT TTATTTATTT TTTAGACGGA GTCTCACTCT GTGGCCCAGG CTGGAGTGCA 000880 000881 CTGGCGCAAT CTCACCTCAC TGCCACCGCC ACCTCCTGGG TTCAAGTGAC TCTCCTGCCT CAGCCTCCTG AGTAGCTGGG 000960 000961 GTTACAGGCG CCTGCCACCA CGCCCAGCTA ATTTTTGTAT TTTTATTAGA GATGGGGTTT CACCATGTTG GTTAGGCTGG 001040 001041 TCTCAAACTC CTGACCTCAT GATCCGCCTG CCTCGGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCTA CTGTACCCAG 001120 001121 CCAATTTTTT TATTTTTATT TTTTGAGATG GAGTCTTGCT CTTGTCGCCC AGGCTGGAGT GTAGTGGCAC GATCTCGGCT 001200 001201 CACTGTAGCC TCTGCCTCCC GGGTTTCAGC AGTTCTCCCA CCTGAGCTTC CCTAGCTAGC TGGGACCACA GGTGGGTGTC 001280 001281 AACACACCTG GCTAATTTCT TTCTTTTTTT CTTTTTTTTT TTTAAGAGAT GGGGTCTCAC TATGTTATGT TGCCCAGGCT 001360 001361 GGTCTCCAAC TCCTGGGCTC AAGTGATTCT CTCGCCTTGT GCTGAAATTA CAGGAGTGAG CCACTGCACC CAGCCCTGTA 001440 001441 TGTGTAGTAT TTTAAGTGAT ATGATTCAGT TTTTTTCTAT CAAAAATAAT ACTAATGAAT ATATCATCTT AACTTCAAAT 001520 001521 TTCAGCCCAT TCGTTTTTTT TGTTTGAGAC AGAGTCTTGC TGTGTTGCCC AGGCTGGGGT GCAGTGGCAT GATCTCGGCT 001600 001601 CACTGCAGCC TCCACCTCCC AGGTTCAAGC AGTTCTCATC CCTCAGCCTC CTGGGTCACT GGGATTACAG ATGAGTGCCA 001680 001681 CCAAACCTGG CTAATTTTTT TTTTTTTTTT TTTTTTGTAT TTTTTAGAAG AGACAGGGTT TCACCATATT AGCCAAGCTG 001760 001761 GTCTTGAACC CCTGGCCTCA AATGATCTGC CCACCTCAGC CTCCCAGAGT GCTAGGATTA CAGGCGTTAG CCACTGCGCC 001840 001841 TGGCCCATAT TTCTTTAGAA TTAATTCCTT GGACCGGCTG GGCACTATGG CTCACACCTG TAATCCCAGC ACTTTGGGAA 001920 001921 GCCGAGGTGG GCAAATCACC TGAGGTCAGG AGTTCGAGAC CAGCCTGACC AACATGGTGA AACCCCCATC TCTACTAAAA 002000 002001 ATAATTAGCT GTGCATGGTG GTGTTCGCCT ATTAGTCCCA GCTACTCGGG AGGCTGAGGC AGGAGAATCT CTTGAACCCG 002080 002081 GGAGGCGGAG GTTGCAGTGA GCCGAGATCA CGCCACTGCA TTCCAGCCTG GGCGACGGAG TGAAATTCAC TCCGTCTCAA 002160 002161 AAAAAAAAAA AAAAAAAAAA AAAAGAATTC CTAAAAGTAG AATTGTCAGT ACGTGTATTT GTGTGAAGCC TTTGACCGCA 002240 002241 TTGCTCTTAC AAAAGCCTTA CCCTATCATT GTTTACCCAG CAGTGGACAG GGGAGCAAGT GGCCCATTTT ATAGAAGTTT 002320 002321 AGAGCCTTTC CAGGGAGGGC ATAGTCAGGT AACCACAGCA GGTAAGGCTG ACCAGTGTGT GCCTCTCTCC ATGGCCTAGA 002400 002401 ACAATCACCA TGAGGAGAAC ATCTCTTCAA AGATGAAGGG CCTGAACGG |
Predicted Small Protein
Name | NONHSAT134980_smProtein_557:796 |
Length | 80 |
Molecular weight | 8521.6569 |
Aromaticity | 0.101265822785 |
Instability index | 57.0924050633 |
Isoelectric point | 9.49383544922 |
Runs | 13 |
Runs residual | 0.0242760534073 |
Runs probability | 0.046213634449 |
Amino acid sequence | MGFLHVGQAGLELLTSGDPPSSASQSAGITGMSHHPRPASRLLCPQRQPVSSLNLSFNSF FFLFSPFPQVLKNFSLNSM |
Secondary structure | LLEEEELLLLLEEELLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLEEEELLLLE EEEELLLHHHHHLLLLLLL |
PRMN | - |
PiMo | - |