NONHSAT135519

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT135519

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1983 nt

Genomic location

chr9-:139334553..139338534

Exon number

2

Exons

139334553..139336275,139338275..139338534

Genome context

Sequence
000001 CCATTTTTCT CTGAACCATT AAATAACTAA ATCCAGTGTT GCAAGAAGTG TCTTGGATCT GCTTCTGTAG CTTATGTAAA 000080
000081 AGTACTGTAA ATCCCACCCA GAAGCGGTGT CTGTATCTGC ACTTGAAGTG ACAGCTGCTG TGCAGCGCAG CCCTGCTGAG 000160
000161 GTGACTTCTC TGTGCTTCTC AGGCTCCTGG CGACCTCCCT GCTGCAGGGG GCCCTCCCAG CGGGGCCATG CCCTTCTACA 000240
000241 ACCCTGCTCA GCTGGCACAG GCCTGCGCCA CCTCCGGGAG CTCAAGGCTA GGGAGGATTG GCCAGAGGAA GCACCTGGTG 000320
000321 CTGAACTAGG CTTGCCCTGC TGTGAACTTG CACTTGGAGC CCTGACGCTG CTGTTCTCCC CGAAGAACCC GACCGACCTC 000400
000401 CGCGATCTCC GTCCCGCCCC CAGGGAGACA CAGCAGTGAC TCAGAGCTGG TCGCACACTG TGCCTCCCTC CTCACCGCCC 000480
000481 ATCGTAATGA ATTATTTTGA AAATTAATTC CACCATCCTT TCAGATTCTG GATGGAAAGA CTGAATCTTT GACTCAGAAT 000560
000561 TGTTTGCCGA AAAGAATGAT GTGACTTTCT TAGTCATTTA GGATGATTTA AGGATATAGT ATTCCTGGTC ATTTAAGAAT 000640
000641 GTTCATTCAT TGAAGCCGGA GCTGTCTCTG CCACAGGAGA GCCACATGGT CGGTAGTAAC CAGGGCCTCT CCAAGCCCAG 000720
000721 CTGTGAGTCA CTGCCCAGTG AGTCCCGCGC TTCCTTTAAG GTGCTGGGAG CAAAGAGAGG GTGACTGAGG CAGACCCCAA 000800
000801 CCCCTGCTCT GCACCATCTG GGCCCTCGCC GTGTTTGAAC CTGGCTGAAT GAGTGGAGGG CGCTGTGTTC TCAATCAGCG 000880
000881 CCTCCGAGGA GCCGTGGGGT TCCTTCGGCA TTAGTTCACG GTTTTTGAGA GAGGCCTTAG TTACTGCAGT GAATTTCTTT 000960
000961 CCTGTTGCAA AGACGCTTCC AGCCTCACTT TACTTTCTGT GGCCTGATGA GGACCATGGG TGATTTTGTG TACCCAAAGC 001040
001041 GCTGGGGACT GCCCACCGTG TGGCCCAGTC ACTGGGAAGG AGCCCCAGAG AGCCGGCTGT CTGACATGAT GGCTCAGGGT 001120
001121 GGTCATCCAG GTTGAAAACT GACCGTGTGA TGTTTGATTT GGGCTTCATT TCGTGTGTAG GAGCACGGTT AGACTCACTG 001200
001201 TTAAGGAAGC TGGATGCACT TCTCTAAAAG GCTGCACTTT CCGTGAGCAC TTTTCGTGGT ACAATCCACA TGACCCACTT 001280
001281 TCTCCCCTGG GGGACGTTGG TTCAGAGGTT GGTAGCACTT GGGGAGAGTA TCTTAACACA GTTTCTTGAC AGCAGCTCTG 001360
001361 GAACTTAGTA TTTCTGCCCC GAGTTTTGCC ACACTGAGAC TTTGAGTAGC TCCTGGTGGA CTCAACCCTG TTCAACTCAG 001440
001441 AGACGGGCCT CCTCTCACTG ATGCAAAGCT TTAAGGCTTC TCTGACTGTT CTGAAACTCT TCGTATTCTT GTCAAGTCTA 001520
001521 AAGAGACTGA AGAAAAGATT TAAATACTAA TAAAAATCAG TAGATAATTT CTGTAGGTTC TGCTGGAGGA ATACAAACTG 001600
001601 TTTGGTGTTT TAAATTTAAG TGTAGAAATT GTAGAATGTG GAATTAGCAC AGATCCTTCC TGGCTTTCTG TTTCACTTGA 001680
001681 TCATTTAGCC CAGACCACCC AGGATGTTTT CCAAAATGTT CCACAGGCGT GTCCCGCTGG ATCCATTTGT CCTTGTCACT 001760
001761 TGGAGAAAGG CCAGTCCCTG TGACGGGGCA GCCCTCTCTG TCCCTCGGTC AGCTCGTGTG AATCCTGGGA CCTCTTCCGG 001840
001841 TCGGCTCTGC CCGCTGTTCT GGGGTCGACT GCCACGACTT TTGATTCAAG AAGCTTCCTC CAGGCGGGAG CGGCTATTTT 001920
001921 TCCTAAATGA GAATTGTTAC ATTGCAAATT GTTGAATAAA ATATTTTGCG CTCCTTCAAG CAC
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Predicted Small Protein

Name NONHSAT135519_smProtein_1703:1954
Length 84
Molecular weight 9512.0491
Aromaticity 0.10843373494
Instability index 51.5072289157
Isoelectric point 10.7228393555
Runs 15
Runs residual 0.0406961178046
Runs probability 0.0468939527763
Amino acid sequence MFSKMFHRRVPLDPFVLVTWRKASPCDGAALSVPRSARVNPGTSSGRLCPLFWGRLPRLL
IQEASSRRERLFFLNENCYIANC
Secondary structure LLLLLLLEELLLLLEEEEEELLLLLLLLLLLLLLLLLEELLLLLLLLLLLHHHLHHHHHH
HHHHHHLHHHHHHHLLLEEELLL
PRMN -
PiMo -