NONHSAT135519
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT135519 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1983 nt |
Genomic location |
chr9-:139334553..139338534 |
Exon number |
2 |
Exons |
139334553..139336275,139338275..139338534 |
Genome context |
|
Sequence |
000001 CCATTTTTCT CTGAACCATT AAATAACTAA ATCCAGTGTT GCAAGAAGTG TCTTGGATCT GCTTCTGTAG CTTATGTAAA 000080
000081 AGTACTGTAA ATCCCACCCA GAAGCGGTGT CTGTATCTGC ACTTGAAGTG ACAGCTGCTG TGCAGCGCAG CCCTGCTGAG 000160 000161 GTGACTTCTC TGTGCTTCTC AGGCTCCTGG CGACCTCCCT GCTGCAGGGG GCCCTCCCAG CGGGGCCATG CCCTTCTACA 000240 000241 ACCCTGCTCA GCTGGCACAG GCCTGCGCCA CCTCCGGGAG CTCAAGGCTA GGGAGGATTG GCCAGAGGAA GCACCTGGTG 000320 000321 CTGAACTAGG CTTGCCCTGC TGTGAACTTG CACTTGGAGC CCTGACGCTG CTGTTCTCCC CGAAGAACCC GACCGACCTC 000400 000401 CGCGATCTCC GTCCCGCCCC CAGGGAGACA CAGCAGTGAC TCAGAGCTGG TCGCACACTG TGCCTCCCTC CTCACCGCCC 000480 000481 ATCGTAATGA ATTATTTTGA AAATTAATTC CACCATCCTT TCAGATTCTG GATGGAAAGA CTGAATCTTT GACTCAGAAT 000560 000561 TGTTTGCCGA AAAGAATGAT GTGACTTTCT TAGTCATTTA GGATGATTTA AGGATATAGT ATTCCTGGTC ATTTAAGAAT 000640 000641 GTTCATTCAT TGAAGCCGGA GCTGTCTCTG CCACAGGAGA GCCACATGGT CGGTAGTAAC CAGGGCCTCT CCAAGCCCAG 000720 000721 CTGTGAGTCA CTGCCCAGTG AGTCCCGCGC TTCCTTTAAG GTGCTGGGAG CAAAGAGAGG GTGACTGAGG CAGACCCCAA 000800 000801 CCCCTGCTCT GCACCATCTG GGCCCTCGCC GTGTTTGAAC CTGGCTGAAT GAGTGGAGGG CGCTGTGTTC TCAATCAGCG 000880 000881 CCTCCGAGGA GCCGTGGGGT TCCTTCGGCA TTAGTTCACG GTTTTTGAGA GAGGCCTTAG TTACTGCAGT GAATTTCTTT 000960 000961 CCTGTTGCAA AGACGCTTCC AGCCTCACTT TACTTTCTGT GGCCTGATGA GGACCATGGG TGATTTTGTG TACCCAAAGC 001040 001041 GCTGGGGACT GCCCACCGTG TGGCCCAGTC ACTGGGAAGG AGCCCCAGAG AGCCGGCTGT CTGACATGAT GGCTCAGGGT 001120 001121 GGTCATCCAG GTTGAAAACT GACCGTGTGA TGTTTGATTT GGGCTTCATT TCGTGTGTAG GAGCACGGTT AGACTCACTG 001200 001201 TTAAGGAAGC TGGATGCACT TCTCTAAAAG GCTGCACTTT CCGTGAGCAC TTTTCGTGGT ACAATCCACA TGACCCACTT 001280 001281 TCTCCCCTGG GGGACGTTGG TTCAGAGGTT GGTAGCACTT GGGGAGAGTA TCTTAACACA GTTTCTTGAC AGCAGCTCTG 001360 001361 GAACTTAGTA TTTCTGCCCC GAGTTTTGCC ACACTGAGAC TTTGAGTAGC TCCTGGTGGA CTCAACCCTG TTCAACTCAG 001440 001441 AGACGGGCCT CCTCTCACTG ATGCAAAGCT TTAAGGCTTC TCTGACTGTT CTGAAACTCT TCGTATTCTT GTCAAGTCTA 001520 001521 AAGAGACTGA AGAAAAGATT TAAATACTAA TAAAAATCAG TAGATAATTT CTGTAGGTTC TGCTGGAGGA ATACAAACTG 001600 001601 TTTGGTGTTT TAAATTTAAG TGTAGAAATT GTAGAATGTG GAATTAGCAC AGATCCTTCC TGGCTTTCTG TTTCACTTGA 001680 001681 TCATTTAGCC CAGACCACCC AGGATGTTTT CCAAAATGTT CCACAGGCGT GTCCCGCTGG ATCCATTTGT CCTTGTCACT 001760 001761 TGGAGAAAGG CCAGTCCCTG TGACGGGGCA GCCCTCTCTG TCCCTCGGTC AGCTCGTGTG AATCCTGGGA CCTCTTCCGG 001840 001841 TCGGCTCTGC CCGCTGTTCT GGGGTCGACT GCCACGACTT TTGATTCAAG AAGCTTCCTC CAGGCGGGAG CGGCTATTTT 001920 001921 TCCTAAATGA GAATTGTTAC ATTGCAAATT GTTGAATAAA ATATTTTGCG CTCCTTCAAG CAC |
Predicted Small Protein
Name | NONHSAT135519_smProtein_1703:1954 |
Length | 84 |
Molecular weight | 9512.0491 |
Aromaticity | 0.10843373494 |
Instability index | 51.5072289157 |
Isoelectric point | 10.7228393555 |
Runs | 15 |
Runs residual | 0.0406961178046 |
Runs probability | 0.0468939527763 |
Amino acid sequence | MFSKMFHRRVPLDPFVLVTWRKASPCDGAALSVPRSARVNPGTSSGRLCPLFWGRLPRLL IQEASSRRERLFFLNENCYIANC |
Secondary structure | LLLLLLLEELLLLLEEEEEELLLLLLLLLLLLLLLLLEELLLLLLLLLLLHHHLHHHHHH HHHHHHLHHHHHHHLLLEEELLL |
PRMN | - |
PiMo | - |