NONHSAT135586
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT135586 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2505 nt |
Genomic location |
chr9-:139632619..139636456 |
Exon number |
3 |
Exons |
139632619..139634005,139634402..139635395,139636333..139636456 |
Genome context |
|
Sequence |
000001 ACATTCTGGC CACTGCCACT GATGCCCAGG GATTCTTGCC GGCCAGGGAC AAGAGGAAGC TGGGGGCGTC CGTGGTAAAG 000080
000081 GTGAACAAAG TGGGCCAGCT CCGCGTGCTC CTCGCCTTCA GACGTGAAAG GGGTGAAGGC CTTCCACGTG CTGTCCACTG 000160 000161 ACTACAGCTA CGGCTTGGTC TACCTCCGCC TGGGGCGTGC AACCCAAAAC TACAAGAACC TGCTGCTCTT CCGTGAGCAG 000240 000241 GCACAGCGGA TGGCAgagga tggtggaggg ggtgcagagg gaggcataga ggggcgctgg gcacaggggg ccgggcagga 000320 000321 ggtgaggcgg gcagggagag tgggggttgg ggcggtggtc agggcagggg cAATGGAAGC CGAGACCACA GCAGTCAGGT 000400 000401 CCTGGAGGTC GCTGAAGCAA GGATAGGGGA CGTCAGGAAG AGGCTGCAGA GAAAGGTGGG CCATCCAGGG GGAGCGGAGG 000480 000481 CCACCAGGAT GGTGGCGGGT GCAGGTGCAA CGTTCTGGGT GAGGGACACA GTGGGGATGA GGAGGCGTGG GAGGGGTCCC 000560 000561 AGGTAAGGGT CTGCCCGGGA TGGAGGGGTG TGGAAGTGAC CCAGTGTGGG TTAAGGGCCA CAAACCCAAT TCTAGACACC 000640 000641 AACCACTTGG GGTACACGGA AAGGAGTGGC CCTCCCGGTT GGAACGGGTA GAGGGGAGGT GGGGTCCTGG GGTCTCAGTC 000720 000721 GAGGCAGGGC ACGCTCAGGG TGCAGCAAGC TGGGGCACAG CTGAGGGGCT GGCTGGAGGG GACTCTGCAG GCAGAGAGGG 000800 000801 TTCCCCAGGT GACAGCGTGG TGACCCTGGC TTCCCGAGCC TGGCTGCCTC GTAAGTGGGG AGGGGCCCAG CGGCCGCTGT 000880 000881 CCTCCCCTGG CCAACCCCTG CTTCACGCCT AAGCTCTGAG GACATTTCAG CAGCTCCTGG GGTAGGGATG GGGGTCAGGG 000960 000961 TGCAGACCCT AAAATGGCCA GAGCTGGAGT CTCTGATGTG ATCCTGATCT CAACCTCAGA TAGGCAGAAT GTTTCGAGCT 001040 001041 TCCAGAGTCT GAAGGAATTC ATGGACGCTT GTGACATTCT GGGGCTCTCC AAGGCCGCCG TCATCCTCCC GAAAGACGCG 001120 001121 TCCCGTACAC ACACCATCCT GCCATGAGAG CCAGCGTCCT CTGCTCTTCC CTTTCGACGC GTGGTCCTCC CAGACCCGAG 001200 001201 GAGCGTTGTT CCAGATGTCA AGTGGAGACC ACGGCTTGTT GAGAGGTGTT TGGTGACTCT AGGTCATTGA CAGTGTGAAA 001280 001281 ATCAAGTGGC TCAAGGGATC CTTTATGATC ACAGAAAGAT GGGGGAAGGA GGATACAGGC TGACCGGGTG GCGAGATGTC 001360 001361 AGCCAGGCCC CTTCCCCACT GTCTTCTGGA GCACACTGCA GGCTGCTGCT ATTCCCTGTC TGCTGTGAAA CAGACCACAG 001440 001441 GCCGGCCCAA CGCAGTCCTC GCCGTGTGCC TTGCCTCTGC CCTCCACGCC GCCGCCACCC TCCGCGTTCC TTTACATCCT 001520 001521 GCACTTTCTC AGGAAGCCGt tcgcatatcc acccaacatg gaggagcccc catgacgtgc caggcagcgt gctggcccct 001600 001601 gcggctgcgt tagggaacag aatcggcaaa cgcagtcccA GAGTTGATGC CTGATCAGGA GAAGCCAACT TCAGCAGTGT 001680 001681 GGTCACCTGG ATACTCGAGT ATAGACCCTA GATCACCTGG ATACTCGAGT ATAGACCCTA GAAGTGTATC TAGGCGCGGC 001760 001761 CAgggcccca caacagcagg tctgactcat tccatccagg gcagcatcag ggagagcttc ctgggggaag tggcatttgg 001840 001841 gctgacctgg gaagggtggt gggtgttaag tcagtttggg tggggctgga ggagcagggg tgcatcccca gaacaggatg 001920 001921 tgacttctga aaagacatca gagtagagaa aatggtttct caaggagatt ggggacgcca gtatcagaat ggcggcgggg 002000 002001 agagccacag aggagcagga ggggGCCCAC CAGACCACGG CACCTCGAAG GCTGCGGTGA AGGCTTAGGT CTCACTCAAG 002080 002081 GGGTGATGAC GGGAGGTTGT CTGAGAtgaa ccccccaact gaatgaatgg accttcttct ggccaagggg atcccaaaga 002160 002161 aaccctgaac ccgagtcctc agccatgacg gggtaagggg tcagcccctc ctTCTGGCCC GAGAAGAGAT CAGAGATTGG 002240 002241 TTCTGGGCAG TCCATGGAGA ATTTgctcag ctggaccagt acacgcttct cctttcatga atattcatga ctcctcctga 002320 002321 agcttattga acatctctat ttggccatct ccttcagcgt aaattcctgt cccctctgtc cctcccctcc aagtgtctgt 002400 002401 tccaggcttc tggcctgagg ctacgcttcc tagcctgtca gaagggctgc cctgctggct gcaatctctt atgagaaata 002480 002481 aagctctcct GTGTGCAAAA AAGTA |
Predicted Small Protein
Name | NONHSAT135586_smProtein_1646:1945 |
Length | 100 |
Molecular weight | 10860.7219 |
Aromaticity | 0.111111111111 |
Instability index | 60.5101010101 |
Isoelectric point | 5.33673095703 |
Runs | 13 |
Runs residual | 0.00237670825906 |
Runs probability | 0.0449974861739 |
Amino acid sequence | MPDQEKPTSAVWSPGYSSIDPRSPGYSSIDPRSVSRRGQGPTTAGLTHSIQGSIRESFLG EVAFGLTWEGWWVLSQFGWGWRSRGASPEQDVTSEKTSE |
Secondary structure | LLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLEEEEEEELEEEEEHHH EEEEEEEEEEEEEEEELLLEEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |