NONHSAT136204
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136204 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3592 nt |
Genomic location |
chrX-:8993146..9132680 |
Exon number |
9 |
Exons |
8993146..8993418,8993525..8993624,8995909..8996007,8997348..8997459,8998302..9000202,9000382..9001116,9050620..9050776,9130838..9130945,9132574..9132680 |
Genome context |
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Sequence |
000001 atgtgttgtg tatcctcctg ctttaccttc taccgtgagt caaagccccc tgaggcttcc ccagaagcag atgctggagc 000080
000081 tatgtttcct gtacagcctg cagaactGCA GATGGAGTTA TTGCCATGGT GTTAGGACAA GCTGATTGTG TTAAAGCATG 000160 000161 TGACACACCT AATTTCAGAA ACCAGAGGGG AAATCGCCGC TCATTAAAGT TCAAGGAACA TATCCTGGAG GCTTAGTGAA 000240 000241 ACCAGCTCTC TCTTCCCATC AAATGAGAAG TCTCTGTGTC TTCAAATGAA AGCCAAGAAA GCACACCCCA GAGTCGAATA 000320 000321 CAACAAAACA TCAGGCAATG CCTTTGAAGA GCAGTTTTCT TTGCCAACCA AGGTTCGGGG ATCGCCTCTA GCTTCCCAGG 000400 000401 ACAACCAGCC ACGGATCCTG TGGGCAGGAG GGCTGCCAAG GCCCAGTTGG AGGCTCAATT TATGGCGGCC TGGGGGAAGA 000480 000481 AGCATGCAGG TAAATACAGC CCAAGGGGAC CCAGAAGAAG GTGCACGCCC AAGAGGACGG TCTGTCTGCT TTCTGCGCTG 000560 000561 GGGGCACAGG GGCAGCCCGA GGCCCCAGGC CCCTTCGTGG CTCTGGAGTC CATTGTGCAC GTGCTAAGAT GCGCCAGGTT 000640 000641 TTCAAAGCAG GCTCAAGGGC CTTAGGCTTC CCCGTGGAAG GCTCCCCCTC ATAGCAGGGT TACAGATGCT CTCAGAGCAG 000720 000721 CTCTTCTCCA TGGGTGCAGT CCTGACATCC AAGGGGTCTG AACTGTAGTA CGTTGTTTAC TGGAACCTGA ACCCGAAGGG 000800 000801 CTTCCAAAAG TCCCTCGATA AAATGGTCAG GAACCGGTGA TTCCATGTAT AGCTCTGCTT TAAAGCTTTA ATTGGCAGAG 000880 000881 AGCCCCCCCC CCCCAAAAAA GTCTACAACT AGTACATTTC TCCACAAAAA ATGTCCACAG CAGCATCTTC CTCTAAAAAA 000960 000961 GGTTTGTCTT TTACATTTTA ATGCAGGAAA GGATCCAGTC CGTGATGAAT GTGAGGAAAG AAACCGTTTT ACAGAAACAA 001040 001041 GGGAGGAAGA TGTAACTGAT GAGCATGGGG AAAGAGAACC TTTTGCTGAA ACAGATGAAC ACACGGGGGC TAATACCAAG 001120 001121 AAGCCAGAAG ATACTGCAGG TATGTTTTAG GAGTTATCTG TAGTTTATGA AAATTGTTTT CAGTCATACA ACTGTTGCAG 001200 001201 TAGGTTATAT GAATTAGTGG ACGACAAGAC TGTCTTAAAT GGCTTCTCAT ATGTAGCATT TAACGTACGT ATTTAATGTA 001280 001281 ATCTATTTGA TAAATTTTTC TTACCTTTTT GATTGTTGAT GTGGAATGTG AGAATGCTTC TAATAATGGT GAAGCGAGAT 001360 001361 GGATGGCTTT TCTTTCATAC ATGTGGAAAT TTAATTGTTT GGAGGATATT AGAGGACAGT GGAGGAGAAA CAGCTCTATT 001440 001441 CGTTCCTTTT AGTATACACA GATTAAGTCA TATATCAATG Gtttttttta gcttttactt taagtttggg ggtacatgtg 001520 001521 gaggtttgtt atgtagataa attgcatgtc acagggtttt ggtatacaga ttattttgtc acccagttta taagcatagt 001600 001601 acctgatggg tggtctttga tcctcaccct cctcctaccc tccaccctca agtaggccca gttgtctgtt gttcctctct 001680 001681 tcctgtccgt ctgtactcag agtttTTAAT ATGAGTTTTT CATGTTCCTA ATTTAGCTGT TCTATTGTCA CAGCTTTCTG 001760 001761 ATTTTGTTTT CTTTAAAGTA CAAGAGAAAA TTGAATTTTC TAAAATCATT TTCTATTATT ATTCCAGTAA TAAACTGTGT 001840 001841 AGTAGAAAAG TAAGGACAAC TTTTCTACCT AGTGAGAAAC ATGTAATTGG CTCCAAAAAC TCATAAACTT TATATTGCTG 001920 001921 TGTGAAATAT TAGTTACACT CTTATAGGAC CATATTTTCA AAAAAGTTTG AGAAAATTTC TGTAGAGATG ATGGAGACAA 002000 002001 TACTCTTATT TTTAAAAAGC TCAATTCAGT TTTCAGCTCT TCTCTAGCGA TGATTCATAC AAGCAGTATA TTTGGAAAGC 002080 002081 TTGGTGACAA AGTGCTGGTT TTGTGAGCTG CCTAATACAT TGGGCATTAT AGATGGAGAC TGTATGTAAA AAATATTTGC 002160 002161 ATTGTGGTAC AAATCTTTTA TGATTGCTGA AAATTATTCT TAGCAATTGA TGGTAGAGCT CTGATGTGAA ATCATGTTTA 002240 002241 GGAAAGCATT CCTTGCAGTA TTACAGTTTT CTGAAACACA GCACTATGGG TACAAATGTC ATAAAAAGCT CCAAGAAAAC 002320 002321 ATTTCAAAAG TGTTTTTGAA TGTATTTCTT TACCTAAACC TAAATTTTTA TACTCATGGC CATTGCTTCT TTTATTAAAA 002400 002401 TACAGTTAAT AGCATCAATC ACTAGATTGC TTAAAAATGC TTTTCTTATT GTGCATTAAG TTATTTCTAC CCTTTTGAGG 002480 002481 GTTCTATTAT ATAAGATACT TTTTTGTGTG CTTTACGTAA TGAATTGTGC AGTATTTCAT GGAAGCATCT CCTTTGAATT 002560 002561 GTAGGACATT TTATAAATGT AGAAATTAAA GTCTGTGCTT ATAACTCTTT CTGCACATTT AAAAAATAGA GACTTTTAAT 002640 002641 TATTTGCTTT TTTTCATCAT CTGTCAATTA AGTGATTTTC AGTTATACCA ACTGGAATTG AAATGCGAAT GTTAATACCT 002720 002721 GAAAGGTTTT ACAGAAAATA AGTGAGTAAA TCTTGCTTTT TGAAATGATC TTTGCATTTT ATATTTTAAA TATCCTTCTG 002800 002801 AAATTGCTGA ACCATAAAGT CCCATATTGA TGTCAGTATA TGCAAAGAAA CTACTTTTCA ACATTAACTT TTAATCCATT 002880 002881 TTCATTTACT ATCTAACTGA CATTAAAGAG GATCTTACTG CAAAAAGAAA AAGGATGAAA ATGGATAAAA CTTGCAGCAA 002960 002961 AACAAAGAAC AAAAGTAAAC ATGCTTTGAG AAAAAAGCAA CTTAAAAGGC AGAAACGTGA TTATATACAT TCTCTGAAGT 003040 003041 TGCTAAATGT CCTTGAAGAA TACATCACAG ACGAGCAGAa agaggaagaa gaagaagagg gagaagagga agaaCTAATT 003120 003121 AGAATATTTC AAGAACAACA GAAGAAGTGG CAACAATATA GAAGTGTTAG GAGAGAGAGG CTGAAAGAGA TGAAGCTGCT 003200 003201 ACGTGACCAA TTCGTAAAGG CTCTTGAGGA CTTTGAAGAC CTTTGTGACA GAGTTTTTTC CGATGAAGAC AGTGAACTTG 003280 003281 ATAACTAGAC ATGTTTTTAA ATAAAATCAT GTCAGAACTC TTTTGGAAAA GTTGGCACTT ACCCAGTTGT CTCTTCAACC 003360 003361 TCTGTTATTC TGATGACTGA AGAAAGAACT TGAACCTATG TTATATGATA CAAGCACAAC TTGAGCTACA GTAAACTACA 003440 003441 TGACAGTGTT TTGATAATTG TTGTATAAAT CGGTATAGCT CCTCTGTCAC TCGTCTGTTA AATGCCAGAC CTCGTTTCTA 003520 003521 TGATCTGTTG AATGAATCCT AGACACTTCT GTGAGAAAGC AGGGATTGCA TAGTTATGTA CACGGTCAAT TA |
Predicted Small Protein
Name | NONHSAT136204_smProtein_461:664 |
Length | 68 |
Molecular weight | 7226.4087 |
Aromaticity | 0.0597014925373 |
Instability index | 58.3164179104 |
Isoelectric point | 10.9758911133 |
Runs | 7 |
Runs residual | 0.0388372274752 |
Runs probability | 0.0174628409922 |
Amino acid sequence | MAAWGKKHAGKYSPRGPRRRCTPKRTVCLLSALGAQGQPEAPGPFVALESIVHVLRCARF SKQAQGP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEEHHHHLLLLLLLLLLLLLEEHHHHHHHHHHHHH HHHLLLL |
PRMN | - |
PiMo | - |