NONHSAT136254
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT136254 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(AS) |
Length |
6123 nt |
Genomic location |
chrX-:11108271..11150108 |
Exon number |
2 |
Exons |
11108271..11111418,11147147..11150108 |
Genome context |
|
Sequence |
000001 ATCGGAACAT AATTCCAAAA TGTAAAATAA GGTAAAACTG TACCTTGCTC CATCCCAGGG AGTATGAGCA ATGTTTATGA 000080
000081 TATGCAAAAC CTGTTCCACT TATTTCCTTC CATACTTTTC TTCCTGTGTT TCTATTTCTG CCATCATATT TTTTTGTATT 000160 000161 CTTATGTCTG AGTCACTGTT TCTCTGGCAT TATCTTTTAG TGTGTGCTTC TCTTACTGCT AGAGTCTGAG TGTTGGTGTC 000240 000241 CCCTCAAAAT CCATATATTG AAACTTAACC CGGAAGGTGA TGGTATTAGG ACGTGGGAAC TCTGGGAGGT GATGAGGTCA 000320 000321 TGAGAGTAGA GCCCTCATGA ATGGGATTAA TGCTCTCCAA AAGAGGCTCC AGCTCCTTCG CCCCTTCTGC CATGTGAGGA 000400 000401 CTCAGTGAGA AGGCACCGTC TATGAAGCGG GAAGCCCTCA CCAGGCACCA AATCTGTCAG TGCTTTGACC TTGGACTTCC 000480 000481 AGGCTCCAGA AATGTGAGAA ACACATTTCT GTTGCTTATG AGCCTCCCAG TTTATGGTGT TTTGTTATAG CAGCCCCAAC 000560 000561 AGACTAAGCC ATTTGCTTAG TTCCAAGATC AAATGTAATG TTGGGCAATG AATGAAAAGG AGAACAGAAC CCTCAAATGT 000640 000641 CCAGTAGGGG AAGGCCAAAG CTGTTTCTTG TTTCTGCACA AAGGAGATGA CTTCATTTCC TTAGAAGGTA AATGAATTAG 000720 000721 AGAAGGGATT AGAAACAGGC TTTTTTCTGC AGGAAAGAAA CATAGAGGGT CAGTGTTCAG TGTCTTCTTC TAGTCATATC 000800 000801 CCTTTACTTG GTCAGACACC AAGGGTCTGG GCCCAGGATC TGCTGGGGAA AGTCAATCAT GAAAGGAACA TTGGGACAGA 000880 000881 TGAGCCACTT GGCTCTTTTT CATTCCTGAT GCTTTGCAGG GGATCAGACA ATTATCTTGC CCTCCCCCTC TTCTCTCACC 000960 000961 AAGAGACTTC CATCAGAGGC ATGCATGAGC TGCTCATGCA GTCTGTGGAA GGGCCAGGAG CACATTGAGC TTCGCAAAAG 001040 001041 GGTGAAGCCT TCTGGGTTCA CCCTTTTGCC AATACAGGGG CCAGACCACA CTGGTTTGCA ATGTCATGGC CCAGCAAAGT 001120 001121 GTGCAAGTGA GCACAAGTGG AGCAATTCAG CAGTGACAGG TACCAGATAA ATGAGCTGGC CTGACCCTGG ATGAATTTCT 001200 001201 TCACAGTCAT TCTGAAAATG TGAGTGTTAA GTGTTGAATT GTGTTCCCCT CAAAAATGTG GAAGTCCTAG CCCCCAGTAC 001280 001281 TTGTGAATGT GATCTTATTT GGAAATTGAG TCTTTGCAGA TGATCAAGTT AAGATGAGGT CATTAGGGTG GGCCCTAATC 001360 001361 CAATATGGCT GGTGTCCTAA AAATCAAGGG GATGTTGGGG CACAGACACA GACACACACA GACACAGACA CACACACACA 001440 001441 CACACGTGCA TGCAGAAAAC ACCATATGAA GACTGGAGTT ATGCTGCCCG ATGTGAAAGA AATCCCAGAA GCTGGGAGAA 001520 001521 AGGCCTGGAA CAGATCCTTC CCTAGAGCCT TCAGAGGGAG CATGTCCCTG CTGACACCTT GATCTTGGAC TTCTGTCCTC 001600 001601 AAGAACTGTG AGAGAATAAA TTTCTGTTGC TTATGCCACT ACATTTATGG CCCTTTGTTA TGGCAGCCAC AGCAAACTAA 001680 001681 TGTGTTGAGC AAAGGTCAAG TAGCAGGAAT CACCCAGAGC ACCTTTCCTT CTCCAGTGAG TGCTACCAAG AAAGCGTTTT 001760 001761 CCTTTTGAGA CAACAATTCT CATAGAAGCA GCGTACACTA AGAGGGACCT TCTGTTACCC AGTCTGGGAG GCTGTTGTCT 001840 001841 TCACCCCATT ATCTTCCTGC CCCCACTATC ATCACCTACA GAAGTCATAT GAAGAAATGA ACTTTCAGAG GAAAGCTTTT 001920 001921 CATTATTAAA GCAAAACAAA GGTGTAATCA GGCAACATTC AGAAGTGAGG GGAGCAGGAG GACTTAAAGA AGAAATGGAA 002000 002001 AATAAGCAAA ATTGGGGAAG TGGCATTTAC ATTTAAGATT TGCTTTTGCA TCTTCTGCAT GGGAACTTCG ACCCACGGCT 002080 002081 ATGTGACTAT GAGGCAACTG TAAATGCATC ACAAAGATGG GGGTGGATGG AAGCTCAAAG GATTCAAAAG ATGCCAGAGG 002160 002161 AAAGTGAAGC TCAAATTGGG CCCCCTGGCC CAGCAGCATC AGCATCTCCT GGGAGCTCGT TAGAAACAAG AATTCTCAGC 002240 002241 CGCCCCAGGC ATACAGGATC AGGAATTCTG GGTGGGGGCC CAGCCATCTG CGTTTTAACA AGCCCTCTAG GGGATTCTGA 002320 002321 TACATAGTAC ACAAAAGCTT GAAAAGCATC TTGCTGGGGA AACCACAAAA GGGAGAGAGG TGGAAGGGGA AAGGCAGCAA 002400 002401 GATCCAAAAT GCTGTTCTAA GGCAATGCTT GGCCTGAACA ATGTCAAATC ATACTTTTAA AAAAATCCAG CTGAAACTAG 002480 002481 AAATCATAAA ATGATCACAT GTTACATTTT ACCTGAAAGC ATAAATGTAC ATCATTTACT AATCTTTCAA CAAGGAGCCA 002560 002561 AGGCCTTTTG CATCTCTGGG TGCGGTGGGT CAGCAGTGCC ACTTCATCCT TCTTACTAAT GCACAGTGGA TGAACCACAT 002640 002641 CCACTGTGCA TCATCTATTC TTCCAGTTCC AGGGCTTTTT TTTTTTTTAA CAGCAAATTT AAGAAACGAC TACAAAGCAG 002720 002721 TGAGTGAAAA ATTATTCTGA TTTTTATGAT ATTTTCTAAA CCCCTTCCAG TTTCATGGCA ACATTTTTTG GGATTCTCCT 002800 002801 TCAAAGCCTT CCTTATCATT CATTAGTCTT TATATACTTG GCTTATGCAT TTACATTGCA TTGTCTGTTG TTTTGGTTAA 002880 002881 TTAAAATAAT TACGTTACTG GCTCATGCTA AGCCGGCTGC TCAACTAGGA GGATGGGGAC CTCCTGGCTG TAGGGATCAA 002960 002961 CCTGCACTCT AGCCTGGGTG ACTGAGCAGG ACTCTGTCTC CAAAAAAAAA AAAAAAAACA ACAACAATGG AAAAAAACAA 003040 003041 ACAAAAAAAC TTTTGGAAAA AAATCGGGAT AACTCATTAA AATTAAAGGA AATAAAATGA AAGATAGCAG TTGGGTGTAT 003120 003121 CAAGGCAGGA TTTAAAGGAA AAATGTTAAT TTTTACTTTA ATCAATTTTT AGCTATTTTA TCTATTATCA GTCATGTGAA 003200 003201 GTGGGAAAAT TATATTTCTT TTTCTTTATG AGACAATATT TATTCTGTTT ATGATTATGT ATCCCAATAA ATATAAGTCC 003280 003281 CAGCATCATC CATGAAAATG GCTACTGATT CAAAAGCTTG ATTCCTTGGG CTAGACACTG GAAGACTCAA AAGTCCCAAA 003360 003361 GGAAATCAGT ATTCTCTTTG TTTTATTTAT TTTGTTTTAA CCTCATGGGT ATCTATAGGT GAAGTTTGGC ATATAATATA 003440 003441 TTTTTTATTT CTTGTGAACC AAACTTCATT TAATAATAGA TAATAACAAT AGCTAACATT CATTGATTAA AATGTGTTAG 003520 003521 GGCCTTATTA ATTACTTTAT ATTAATTTTT ATTTAATTAT CGTAACAACC TGATGATATA GGTACGGTTA AAGTATAATT 003600 003601 TTTAACAAGT TAAAAACATG AATGTCATAT ACATACGGAA TGAAAACATT CCAAACAGTC ATTTAACTCA TTAATGATTG 003680 003681 GAACCATTAC AGAATTAAGC TAATTCCAAG AGCATTTTGA GGAATCTGGT ATTTATAGAC ATTTTGAGGG AAAAAAAAGT 003760 003761 GTTGAATAAG ATTTTGAGGC TACATTTAAA ACTGGTTAAT ATCCTTCAAA GCAATAAAAC CACAGTATTT GATGTTATCT 003840 003841 TTTCTATTGG ATAGAAATTT ATGAATTAAC GTAACTTCAG TCATCTAAAT TCTAACCAAA TAGAAAATAG AAAGTCAAAC 003920 003921 ACAGGTACAT TCCCTAGATA ATGAAGTAAC TTTTAGCACC AGTCAGTGCT CTGGTAAAAT TTTGAAAGGT CATGCCGCAC 004000 004001 CCTTTTAACC TTATTCAACT TTTAGATAAT TTTTCTTGAT AAAATTATAA TTGTGTACAT TTTACCAATG AGGAAATTGA 004080 004081 TGCTTAGAGA TATTAAATAA CATGATAAGG GAATCACAGT AAGGGTAGAG CAAAAGTGGA ACCCAGGTCC TTCTGATACT 004160 004161 TTAATCCACT GTCTTATACC AGTTGAAAGC CATTTTTATC TGTCCTATAA AATTCTTTGT GTGTGTGTGT GTATTCAACA 004240 004241 TTACTTAAAA TAAATGGAAT CAATATTTGA GATTGAAAAA CCTGTATTAT ATGAAAATTT TTATTATGAT GGTATCAGTT 004320 004321 GCAGTGAGAT TTGTCCTATC AAGGATTTGT TCTGTTTTGT TTACATGTAC ATACATGCTT ACAATGGTGG AATGATGCAT 004400 004401 TCTTTGCAAG CAAACCAGAC CCCAACTAAT GGTGGGTAAA GGACTCAGAG TTAGAAGTTA TGCCGAAGAT AGACTATAAC 004480 004481 AGGATATAGT TATGCCGAAG ATAGACTATA ACAGGGCTAA AAAATGAAGG AGGGAGACAG ACTTTGACAG CAATGATCTG 004560 004561 AAGAGCCTTG ATGGAAGAAA GCTGAGAAGG AAAAAACTAC AAACACTGAA ATGTACTTAA CTCTCACCTT TTCAGTTTGA 004640 004641 AGCTGTTCAT AGTGAACTCA GCCTGTGTTC TAAATAAACA GACACCAAAA AAATCATGTG GGAGCTAGAA TGTTGACTCT 004720 004721 GGGGATTCTG AATATTGAGC TGATTTATAG TATTCCAACT CTTTGATAAA TGTCTAAAAT GTTTCAATAC TTAGGCTATC 004800 004801 TATGATTTAT TTGTATTTGA TATTAGCTTT ATGATGATAT TGTTTATAAA TCAGCATGGA TTTTGTGTGA GTTATTACAA 004880 004881 GAAAAGTTTA CTCTTCTGAT TAATTAAGGA AAGAACCACC TAACTTTGTG AAACTTCTGA CTAATCAACA TTTGAAATGT 004960 004961 GTTTGTTGGC ATGGTTTTCT AAAATAGGGA GTATAATAAA GTAGGTTAAA AGAATGTTGT ATAGTGAAGG TCCCCAAGAG 005040 005041 ATTGACCTAA TTTATTTATT GTTTAAAACA AAACAAACAG AACAAAACTA AAAATGATGG ACTTGTACTT CAGACTAGTA 005120 005121 TAGAATAACA AGGTCCAGAT TTACCCTCTT ACCTGAAATA ACACAAAAAA ACTACACAAA ATATATGAAG TAGTGATTTT 005200 005201 CAAGACACTA ATATCAGCTA ATGAAGGACA GTGGTCCTTG AGAGATGATA AATGAAGTGA ACTCTATGAC TTCCCAAGCT 005280 005281 TACTGCCTTG GGAGAATTTC CAGACCATCA TGCTGGGGAA GGGGGTCGGT GGAGCTTGAT GAACTCCATG ATATGAGGAG 005360 005361 GTGGAGCTGA GAGTCCAGGG AGAACAACAA GGCTAGAATT CACAGAAAAG AGTACCAGGG AGGAGAGAGC TGCCCAGAGA 005440 005441 TAGGACTCTG GATACCTGCA GAATATCCAT CACAGTACTG ACAGTGTATT CATGTGAGGA TGCTACCCAG AACCAGAGAA 005520 005521 ATAATGACCT GAAAGGATTA CAGGCAGTGA TATGCAGCAC TCTCACTGGC ATGGGAATAG TGCCTATTCC ACCAGCAAGA 005600 005601 CTTAGAAAAC CTCATAATTC ATGAAGCATT AGATGGTAAA CTCTGAAGGA TCTTGCCTCA ATAATGGAAG AATAATTCGT 005680 005681 TCTAAACACA ACTCTGGCCC CGCCTAACAA ATCTTAAGAG CAAGACCCAA ATGGATCAAA AAGTTAGGTA GAGACATGGA 005760 005761 AGATATAGAA AAGACCCAAT TCAAACTTCT AGAGACCAAA ACTGCAATGT TGGAGACAAA GTAGACCACA TGGGAATAGT 005840 005841 GACAGAGTAG ACATTGTAGA AGAAAAGGTT AGTGAATGTG AAGATATGTC AATAAAAGCT ATCCAAAATA AAACATACAG 005920 005921 AAAAATTGTT TAAATGAACA GCACATCAGT GATCTGTGTG ATAACTTCAC ACAGCCTAAG ATATATGTGC AATTGGATTC 006000 006001 CCTGAAGGGG GAAGAGGGAT TATAGGAAAA AATTTCAATA CAATAGCCAA AAATATAAAA CTATAAACTC ACATATCTAA 006080 006081 GTAGGTCAAT AAACCTAAAG CATAAGAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT136254_smProtein_2126:2326 |
Length | 67 |
Molecular weight | 6669.406 |
Aromaticity | 0.0 |
Instability index | 72.8136363636 |
Isoelectric point | 5.09027099609 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0441698382875 |
Amino acid sequence | MEAQRIQKMPEESEAQIGPPGPAASASPGSSLETRILSRPRHTGSGILGGGPAICVLTSP LGDSDT |
Secondary structure | LLHHHHHLLLHHHLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLEEELLLLEEEEEELL LLLLLL |
PRMN | - |
PiMo | - |