NONHSAT136455
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136455 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3363 nt |
Genomic location |
chrX+:20491211..20497643 |
Exon number |
3 |
Exons |
20491211..20491372,20492220..20492349,20494573..20497643 |
Genome context |
|
Sequence |
000001 CACAAGGCAA TACATGATTG AGTACCAAAT GATGCCTTCT GTCTCTGAAC CAGTGACATT TATTACCGCA CACAGAAGAG 000080
000081 AATGAGCCAA GAGGTGCTGC AGGAGTTCAG AGGCAAGAGA GAGGAATGTG GCCTGATATG CACAGAAGAC TTCATGAAGG 000160 000161 AGctggctga aatgcaatga ttcccaggga aacttggaac ccatgtgttg aaggtggtag cacttccatc agcctgggtc 000240 000241 ctgaatgcct gcaggagaat atccttttga tccatgtacc tgccgaggac tgTTCCCCAG ATAGAAGAGA GCTGTCATGT 000320 000321 TTGAAAACAG AAGTGAAGAT ATCCCTGGAG AGTTAGTGAA GGTCATTGAT GGAAGCTCCA GGAGAGAGTG GGGATAATGG 000400 000401 AAGGAATAAA GTTATCCACA TCTCATCTTA AAGCTAGCAT CTTTAATACA GTATAACCAA GATGATTCCT GAAGGAATAC 000480 000481 TCCACCTGAA CTCAAGAGTA GTTGCTTACC AAGAAGAAGC AGTTCAATTG TTCCTAAAAC ATATAATTTG TCTATCTGTA 000560 000561 TAGTTCGACT TTTAGATAAG GATTATAATT TTCAAATATT AACTATTTTC CATTTATGTA TCTAGAAGGA ACAGCTGAAC 000640 000641 TAATATAAAA GCATATGTTT TGTGGACATT GTCACATAAT AGTTTGCCTA TCCACTACAG CTCAAATTTC CAGGAAAAGA 000720 000721 TTGTTTCAGT TTTCAACCAT TAACTTTATC TTCCATGCCT ATGTATCTTA GCATCTCCAA ATCTTAAGCA AAGAGAGAAA 000800 000801 ATTAAAAAGG ATGTAAGTTG TTCTCAAGGA CATAatcctt agggtgatgg aaatgttctg tgtcttgatt gtagtggggg 000880 000881 ttatacaact atatgtgtat gtcaaaattc atagagctgt acaactaaaa agggtgaaat ttactgcctg caaaggatgc 000960 000961 ctcaataaac ctgaCGTAAA TCAAAGCCAA AAAAACCCAA AATTCTTGAA CACCTCCTCT GACATTGTGG TAGGGTACGT 001040 001041 AAGCACATAA AAAAACAGAT TTCAGTCTTA AAGACTGAAA TATGAAAGTA AAGTTCCAGT GTTATCATCT AAATTACCAT 001120 001121 AGAAAAATTT TCCTAGGACA CTTCGTTTCT GTTGTGCCTT ATCAGTGACA GCTCTTTGAA CCCTTCGACC TGACCAGTTA 001200 001201 GGAAAAGTAC AAAGGAAGGG CCCTATCTTT TAGCCATCTT GTTGACTGGA TGCAGAAGGA ATACTTCCTT TAACCACTGG 001280 001281 GGCAACAGTT AAGTTTGCTC AGATACAATC TCATGCAGCA TGATGTTTTT AAGATAGTCT CTGTGATTTT CCAGACTCTA 001360 001361 GGTTGTGCTC GACAGAAACT CAgctcctgc ccagaccctt gcctagcttg catccttgct tcattcaggt ctctgctcaa 001440 001441 atgtcccttg gcagaaaggc ctccttatca gccctattgc aaatgaccat atttgtgaat tggctgcctc tctcactaga 001520 001521 ctggaagttc catgaaggct tcatcttttc tcttaagttc catagcccca gcactagagc agtgtttggc atacagtagg 001600 001601 tgttcGCGAA CCATTTAAAG TGAAGAGGAG AATCGATTGG CCTCTGAATC TAAACCACAG TAAAAGGGAG GAATAATTAG 001680 001681 AACTAGGGAC TTGAATGCAC GCAGAGTTCA CTTTGGTCAT TCACCTGCCA TTCTCTCTGG TGTCTCCTTC CTACTCTCAA 001760 001761 TGATCCACAT AGTGGCTGCC TTGGAACCTC CAGGCTTATC ATATCACAAC TCCACAATCA GAGGGGAAAC AGTCTTTCTC 001840 001841 GCTCAGCTCC AGGTTGCATA ACCCCGGGAA ATGTTCTGAT TGGCCTGTCT CCCAGTGACA TACAGAGGAG GCCAGGACTG 001920 001921 AGCCACAGTG TATCTGCTCT TTTCCTCATT TCTCACTCTC CAATCCTGCC TGCTCCATCT ATTTTGGTGA TGTTGCCCCA 002000 002001 GTTTTAATAA TGATGCTTTA CAGCCCATTg cagatgctgt tagaactctg ccattatccc cctggatccc tttagtattt 002080 002081 ttgctcacac ctgcttcctg catgacatgc attcgctctc aacagcaaca cctgccgatc cttgctggcg ggctgcccta 002160 002161 ggctactagc acctgctttg cctgtgcaat aagagagttc gaagtgcctc taggggtagc ccttgactga tgactgacag 002240 002241 cctaggagta taaacgctgc agtcccttta ctcatgatgg aaacaactct gagatgtgac ctccacatgt ccccagaact 002320 002321 ccctcagcat ggagcctaag ttaccctcca tggggatttg ctggatgctg cacccttgct tggcctcctt cccatcccag 002400 002401 tcccacttcc cattctctac ttgggaatat ctactaaata aataactttc acatgaattt gcagtcttca tccggagaac 002480 002481 cccacctaca acaAGCTCCA TCTTTGCCCC TAGCTCTCCA CCTATTTGTC ATAAGATTTT TTTTGAGGGC AGGTACCTTG 002560 002561 GCATAGTTTC CTGCCTCCCC TCCACACATA TGCACTACAG AAATGTTTAC TTATTTGCTT TTAATATGTT CCTATCCTTA 002640 002641 GAGTTCCTTC CTATTTTCCA GGTTTCCCTG TTTCAACTAT CATTGCTTCT CAGATATGCT AATTTTCTTG CTTTGCTTAT 002720 002721 TACTGATGGC TTGTCTATCT GCCCTCTCTA ATTCAACATG TTAAACATTC CTAAGTCATa agtcaaatac catatgttct 002800 002801 cacctatagg tgggagctaa gctctgggta tgcatagaca tacagagtag tataatggac attggagact cagaagggaa 002880 002881 gggtgggagg gggacgaggg ataaaaacta tatattgggt acaatgtaca ctattctggt gacaggtaca atcaaatctc 002960 002961 agacttcacc gctatacaat gcatctatgt aaccaaaacc cccttgcacc tcaaaagcta ttgaaattaa aaCAAAAAAA 003040 003041 CTATTACTAA CATGGAGACA AACTAATTTC TTTGAAAAAT GTAAACCATT TAAAAGGCAA ATATTACCAA ATCTATTCAC 003120 003121 CATCTTCCTT ATCTGGCCTT GAAGGACTAT TTATGCACTA TTTAACCCAG TTGACCTGAC CAGTGGACCT GGTTTTCCAC 003200 003201 AGAAGTGGCT AGATTCTTTG AAGTTAATGT TGGACTTGAT TTTTTAAAAG CAGGCCCTGA AAAATTTTAA AGGACTATAT 003280 003281 GTCCAGAATA TTATAAAATC AACAAAAAGA AACATTCCTT GTATTTTCCT CTTATTTTCT ATACCTTTCT TCTATGTTTT 003360 003361 GCA |
Predicted Small Protein
Name | NONHSAT136455_smProtein_176:355 |
Length | 60 |
Molecular weight | 6525.3998 |
Aromaticity | 0.0169491525424 |
Instability index | 78.2525423729 |
Isoelectric point | 4.56304931641 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0241685535803 |
Amino acid sequence | MIPRETWNPCVEGGSTSISLGPECLQENILLIHVPAEDCSPDRRELSCLKTEVKISLES |
Secondary structure | LLLLLLLLLLLLLLLEEELLLLHHHHLLEEEEEELLLLLLLLLLEEEELLEEEEEEEEL |
PRMN | - |
PiMo | - |