NONHSAT136455

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT136455

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3363 nt

Genomic location

chrX+:20491211..20497643

Exon number

3

Exons

20491211..20491372,20492220..20492349,20494573..20497643

Genome context

Sequence
000001 CACAAGGCAA TACATGATTG AGTACCAAAT GATGCCTTCT GTCTCTGAAC CAGTGACATT TATTACCGCA CACAGAAGAG 000080
000081 AATGAGCCAA GAGGTGCTGC AGGAGTTCAG AGGCAAGAGA GAGGAATGTG GCCTGATATG CACAGAAGAC TTCATGAAGG 000160
000161 AGctggctga aatgcaatga ttcccaggga aacttggaac ccatgtgttg aaggtggtag cacttccatc agcctgggtc 000240
000241 ctgaatgcct gcaggagaat atccttttga tccatgtacc tgccgaggac tgTTCCCCAG ATAGAAGAGA GCTGTCATGT 000320
000321 TTGAAAACAG AAGTGAAGAT ATCCCTGGAG AGTTAGTGAA GGTCATTGAT GGAAGCTCCA GGAGAGAGTG GGGATAATGG 000400
000401 AAGGAATAAA GTTATCCACA TCTCATCTTA AAGCTAGCAT CTTTAATACA GTATAACCAA GATGATTCCT GAAGGAATAC 000480
000481 TCCACCTGAA CTCAAGAGTA GTTGCTTACC AAGAAGAAGC AGTTCAATTG TTCCTAAAAC ATATAATTTG TCTATCTGTA 000560
000561 TAGTTCGACT TTTAGATAAG GATTATAATT TTCAAATATT AACTATTTTC CATTTATGTA TCTAGAAGGA ACAGCTGAAC 000640
000641 TAATATAAAA GCATATGTTT TGTGGACATT GTCACATAAT AGTTTGCCTA TCCACTACAG CTCAAATTTC CAGGAAAAGA 000720
000721 TTGTTTCAGT TTTCAACCAT TAACTTTATC TTCCATGCCT ATGTATCTTA GCATCTCCAA ATCTTAAGCA AAGAGAGAAA 000800
000801 ATTAAAAAGG ATGTAAGTTG TTCTCAAGGA CATAatcctt agggtgatgg aaatgttctg tgtcttgatt gtagtggggg 000880
000881 ttatacaact atatgtgtat gtcaaaattc atagagctgt acaactaaaa agggtgaaat ttactgcctg caaaggatgc 000960
000961 ctcaataaac ctgaCGTAAA TCAAAGCCAA AAAAACCCAA AATTCTTGAA CACCTCCTCT GACATTGTGG TAGGGTACGT 001040
001041 AAGCACATAA AAAAACAGAT TTCAGTCTTA AAGACTGAAA TATGAAAGTA AAGTTCCAGT GTTATCATCT AAATTACCAT 001120
001121 AGAAAAATTT TCCTAGGACA CTTCGTTTCT GTTGTGCCTT ATCAGTGACA GCTCTTTGAA CCCTTCGACC TGACCAGTTA 001200
001201 GGAAAAGTAC AAAGGAAGGG CCCTATCTTT TAGCCATCTT GTTGACTGGA TGCAGAAGGA ATACTTCCTT TAACCACTGG 001280
001281 GGCAACAGTT AAGTTTGCTC AGATACAATC TCATGCAGCA TGATGTTTTT AAGATAGTCT CTGTGATTTT CCAGACTCTA 001360
001361 GGTTGTGCTC GACAGAAACT CAgctcctgc ccagaccctt gcctagcttg catccttgct tcattcaggt ctctgctcaa 001440
001441 atgtcccttg gcagaaaggc ctccttatca gccctattgc aaatgaccat atttgtgaat tggctgcctc tctcactaga 001520
001521 ctggaagttc catgaaggct tcatcttttc tcttaagttc catagcccca gcactagagc agtgtttggc atacagtagg 001600
001601 tgttcGCGAA CCATTTAAAG TGAAGAGGAG AATCGATTGG CCTCTGAATC TAAACCACAG TAAAAGGGAG GAATAATTAG 001680
001681 AACTAGGGAC TTGAATGCAC GCAGAGTTCA CTTTGGTCAT TCACCTGCCA TTCTCTCTGG TGTCTCCTTC CTACTCTCAA 001760
001761 TGATCCACAT AGTGGCTGCC TTGGAACCTC CAGGCTTATC ATATCACAAC TCCACAATCA GAGGGGAAAC AGTCTTTCTC 001840
001841 GCTCAGCTCC AGGTTGCATA ACCCCGGGAA ATGTTCTGAT TGGCCTGTCT CCCAGTGACA TACAGAGGAG GCCAGGACTG 001920
001921 AGCCACAGTG TATCTGCTCT TTTCCTCATT TCTCACTCTC CAATCCTGCC TGCTCCATCT ATTTTGGTGA TGTTGCCCCA 002000
002001 GTTTTAATAA TGATGCTTTA CAGCCCATTg cagatgctgt tagaactctg ccattatccc cctggatccc tttagtattt 002080
002081 ttgctcacac ctgcttcctg catgacatgc attcgctctc aacagcaaca cctgccgatc cttgctggcg ggctgcccta 002160
002161 ggctactagc acctgctttg cctgtgcaat aagagagttc gaagtgcctc taggggtagc ccttgactga tgactgacag 002240
002241 cctaggagta taaacgctgc agtcccttta ctcatgatgg aaacaactct gagatgtgac ctccacatgt ccccagaact 002320
002321 ccctcagcat ggagcctaag ttaccctcca tggggatttg ctggatgctg cacccttgct tggcctcctt cccatcccag 002400
002401 tcccacttcc cattctctac ttgggaatat ctactaaata aataactttc acatgaattt gcagtcttca tccggagaac 002480
002481 cccacctaca acaAGCTCCA TCTTTGCCCC TAGCTCTCCA CCTATTTGTC ATAAGATTTT TTTTGAGGGC AGGTACCTTG 002560
002561 GCATAGTTTC CTGCCTCCCC TCCACACATA TGCACTACAG AAATGTTTAC TTATTTGCTT TTAATATGTT CCTATCCTTA 002640
002641 GAGTTCCTTC CTATTTTCCA GGTTTCCCTG TTTCAACTAT CATTGCTTCT CAGATATGCT AATTTTCTTG CTTTGCTTAT 002720
002721 TACTGATGGC TTGTCTATCT GCCCTCTCTA ATTCAACATG TTAAACATTC CTAAGTCATa agtcaaatac catatgttct 002800
002801 cacctatagg tgggagctaa gctctgggta tgcatagaca tacagagtag tataatggac attggagact cagaagggaa 002880
002881 gggtgggagg gggacgaggg ataaaaacta tatattgggt acaatgtaca ctattctggt gacaggtaca atcaaatctc 002960
002961 agacttcacc gctatacaat gcatctatgt aaccaaaacc cccttgcacc tcaaaagcta ttgaaattaa aaCAAAAAAA 003040
003041 CTATTACTAA CATGGAGACA AACTAATTTC TTTGAAAAAT GTAAACCATT TAAAAGGCAA ATATTACCAA ATCTATTCAC 003120
003121 CATCTTCCTT ATCTGGCCTT GAAGGACTAT TTATGCACTA TTTAACCCAG TTGACCTGAC CAGTGGACCT GGTTTTCCAC 003200
003201 AGAAGTGGCT AGATTCTTTG AAGTTAATGT TGGACTTGAT TTTTTAAAAG CAGGCCCTGA AAAATTTTAA AGGACTATAT 003280
003281 GTCCAGAATA TTATAAAATC AACAAAAAGA AACATTCCTT GTATTTTCCT CTTATTTTCT ATACCTTTCT TCTATGTTTT 003360
003361 GCA
[back to top]

Predicted Small Protein

Name NONHSAT136455_smProtein_176:355
Length 60
Molecular weight 6525.3998
Aromaticity 0.0169491525424
Instability index 78.2525423729
Isoelectric point 4.56304931641
Runs 11
Runs residual 0.0419841393251
Runs probability 0.0241685535803
Amino acid sequence MIPRETWNPCVEGGSTSISLGPECLQENILLIHVPAEDCSPDRRELSCLKTEVKISLES
Secondary structure LLLLLLLLLLLLLLLEEELLLLHHHHLLEEEEEELLLLLLLLLLEEEELLEEEEEEEEL
PRMN -
PiMo -