NONHSAT136477
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136477 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1906 nt |
Genomic location |
chrX-:22180849..22191100 |
Exon number |
5 |
Exons |
22180849..22181488,22187911..22187972,22189276..22189307,22189627..22189761,22190063..22191100 |
Genome context |
|
Sequence |
000001 ACCCACCACA GAGAATCTTA CATAGGTTCA CATATCTGCA TATCCCTATA TGCACATTTA TGTCTATATA TGTGTGTATC 000080
000081 ACTCACCAGA AACTTTGGCC TCTGAAAATT TTCTCATTTC CAATTCTCCT AAGTAAATGG AGGCCAGCCA TGATTCTGAC 000160 000161 TTTGGTCCTT AGTAACGTCC TTAATAGTGC CAGTTATTTA CCTGTAGTTT TTCAGCTACA TGCCTACCCT TTCACTCTGT 000240 000241 TCCGTAATGC TGGGGACTGG GAATCTGAAA ACTGTTTCTC AAGCTCCTTT GCCAATTAGC TTCCTGCAAA TAGGAGGCAC 000320 000321 TACAGGAAAT TAGTGGGTTG CAGAAGGGAA AAGGGTGCTG TGTTGCTGTC TCTCACTCTC TCTCCCCCTC TACTCACTCC 000400 000401 CTTTTCTTTT TCTGACAATA ACTCTGGAAG AATCTTTGGT TCCTCCTGCA GGGCTCAGCT CTGGAGTGGC GGTTCTCCTC 000480 000481 TGCTCTCCTA GGTGGCGGTG CCGTCGCCTC CTCCCTTCTG TGACCCTGGA CACAGGAGTC GCAGCTGCTT TCTAAAGTTA 000560 000561 CTAATCTGTG GTTTATCTCA TTTTTCCCTC TTCTTGCCTT CCAACATATT TCATGTATTA AATTCCTTGT TTAAAATACC 000640 000641 TAGTGTGCTT TTTGCTTTCC TGGCTAATAC TGAAATATTT CCAAAATTGG GAGAGACTCA CTTTTGAATC TATTTCTATT 000720 000721 AAGAATCAAT GAAATGGAAT ACTTTATTAG GCTGATTTGA AAATGGGCTC ATGCCTACCT TTTTAGGCTA ACAGGCTTTC 000800 000801 CTGCATGTTG ATGGGGGTTC AAATAAAGGG CATTTTATTT CTTCCTGTTC TTTTCAAAAA CTACAAGATT GTTGTTCGGA 000880 000881 AATGCTTTGC TGAGTACCTC AGTTTACCTT GTCATCCTTA AAAAATTTCT GATTCCTTTG CATATTTACC TCTTAATTCT 000960 000961 ATCTCATTTG CTTTTATTTC CACATGAGCC CAACTTCAAT TTTCAACATT TCTCCTTGAC CTTCGTCTGA TCCATCAGTG 001040 001041 ATATGATTTG GCTCTGTGAG AGTCACAGGA GTACACAGCT GCGACTCCTG TGTCTGGGGT CGCAGAGGGG AGGAGGTGGT 001120 001121 GGTGCCGTCG CTTGGGAGAG TAGAGGAGAA CTGCCTGCCG CTCCGGAGCT GAGGTTTCCT GAGGCCTCCC CAGCCGTGTG 001200 001201 GAACTTAGCC AGATAACCAA AGGGAGGCTA ACCGAAGTTA AGTAACCTAC ACAGGATGAA ATAACTAGAC TCCAATTCTG 001280 001281 CTCAGGATGA CAATGGACTC AACAACAACA ACAACAACAA CAACAAAATA GCTGTGTTGC CCAGCTTCCT TTCCAACTGG 001360 001361 AGTCAGCTAC AGGATGAGAT TCGGGCCAAT GACATTTAAG AAAAACTTCT TGTTGCACTT CCAATGATCC ATTTTAAAAG 001440 001441 GGGACAGATT CATCAGCATA TGCTTTCTGC CTCGAGTCCA GGGTTTCTCA ACACTTTGGG CCAGATAATT CTTGCTCTGG 001520 001521 GGTTTGTCCT ATAAATTGTA GGATGTTTAG CAGCATCTTT GGCTTCTACA AATTAGATAC CAGGAGCAAC CCATGCCCCC 001600 001601 CTCCGCAAGT TGTGACAACC AAAAATATCT CCATATATTG CCAAATGTGC CCCTGGTGGC AAAATCACCT CCAGCTGAGA 001680 001681 ACTACTGCTT TAGCCTTTCC TCTTCTTCCT TTCTGGAATG CTGATGCAAT GCCAGAAGCC GAGCAGCCAT CTAGTAATCA 001760 001761 CAAGGCAACA CATATGAGGA AAAAATCTAC ATGCTGAAGA TGGTGGGATG AAAAGCTGAT GGCATTCGAA GGCCAGCATA 001840 001841 TTAGACCTGG ACTGCCTCCC TCTTTTCCCT TCATGACATA CAGAAAATAA AGCCCTTATT TGTTTG |
Predicted Small Protein
Name | NONHSAT136477_smProtein_59:298 |
Length | 80 |
Molecular weight | 9114.5908 |
Aromaticity | 0.164556962025 |
Instability index | 47.2240506329 |
Isoelectric point | 8.73919677734 |
Runs | 12 |
Runs residual | 0.0116178255592 |
Runs probability | 0.0439778013307 |
Amino acid sequence | MSIYVCITHQKLWPLKIFSFPILLSKWRPAMILTLVLSNVLNSASYLPVVFQLHAYPFTL FRNAGDWESENCFSSSFAN |
Secondary structure | LEEEEEEELLLLLLLLEEEEHHHHLLLLHHHHHHHHHHHHHHLLLLLLHHHHHLLLLHHH HLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooo ooooooooooooooooooo |