NONHSAT136617

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT136617

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4774 nt

Genomic location

chrX+:35882975..35887748

Exon number

1

Exons

35882975..35887748

Genome context

Sequence
000001 aaacaggata atagacaaat ctccactgaa caacagtttt gaataatata tgtagaGAGT ATCCTGAATG TAGAGACAGT 000080
000081 GTTTGATGTA CACCTCTGCC TGCGCACTGA GAATAGCCAG TTGGCCCTGT GCTGCAATAA GCATGTGGCT GAGTTTCTCA 000160
000161 TGCATGAGAT AAGTTTCTTC CGTGGACTAA ACAATTTAGA CAACTGATGA AGGAAATGCA GATTCACCAT GAAGTCTCAC 000240
000241 AAAATTAGTT CAAAATAATG CTTTCTGTGA TATTGTTATA AAAATGAATA CCAAACAGAT TTATGCAATG AAAATCCTCA 000320
000321 GCAAGTGGAA GACGCTTTAA AAAGCAGAGA ATgggcgggg gtcgtggctc acacctgtaa tcccagcact ttgggaggcc 000400
000401 gaggcaggtg gatcacctga ggtcaggagt tcgagaccag cctggccaac atggtgaaac cccatcttta ctaaaaatac 000480
000481 aaaaattagc caggtgtggt ggtgcacacc tgtaatccca gctactcggg aggctgaggc aggagaatca cttggacctg 000560
000561 ggaggcagag gttgcagtga gctgagatct tgccactgca ctccagcctg ggcaacagag cgagactcca tctcaaacaa 000640
000641 acaaacaaaC ACAGAGAACG CTCATTTCCA AGGAGAACTT GATGTGTTGG TAAATTGTGA TCAACAGTAG ATCACTTCAT 000720
000721 GCTTTTCATC TCAAAAAGGA TTTTTCAAGA TGCTTGAAAT GTTCATGCTT TCAAAATGAA AATCATTTGT ACTTAGTAAT 000800
000801 GCATTACTAT GTGAATGATG ATTTACTGGC CCTGGTTAGT AAATCTGAAG GCAATCTTCT GAATTATTTG GCAAGATTCT 000880
000881 ACATTGAGGA AGTGGTGTTA GCCATCAACT TTACTATGTG CACAGAAACG TTAAACCTGA TAATGTTATT TTGAGTATAA 000960
000961 AAGTTCAggc caggcatggt ggctcacgct tgtaattccg gcactttggg aggccgagga gggcagatca cctgaggtcg 001040
001041 ggagttcaag accagcttga ccaacatgga gaaaccctgt ctctactaaa aatgcaaaat tagctgggca tggtagcaca 001120
001121 tgcctgtaat cccagctatt cgggaggctg aggcaggaga attgcttgaa cctgggaggt ggaggttgca gtgagccaag 001200
001201 atcacaccat tgcactctag cctgggcaaa aagggcaaaa ctccatctca aaaaaaaaaa aTTAGTTCAT ATTTTCCTGG 001280
001281 CTGACCCTTG GTTATGACTG AAGATAAATG ATGAACTGTT TGGTCTCCCA TGGCCATTAA CATACTTAAC TACATAACAC 001360
001361 CTGAGATTCT ATAAGCAATG GAAGATAGCA TGGGAAAATA CAGCCCAGAA TATGACTTTT TTTTTTTCTT GGTGTtgttg 001440
001441 gggctcagaa aactatgccc caaaatgaag gcttcagaag cagcctcaga agagaaagtt tttttctgac cttctcctgc 001520
001521 tctactgtct ttcactcctt ttctccacag aggctagctg tagaaatcag aattcctcta ccccaaggtg gattttagca 001600
001601 atcaaaaccc cttttcccta caaccagcca taaaacctga aaatattact ctaattttcc ctccaccttt ctttgtaaaa 001680
001681 actggccata aattatctga catacattga ctgtaggtcg taagacccgc attccagaga gtgctctgcc ccacacccag 001760
001761 aagaaaagaa tgcatgctca gagaggagaa tctaggcata caggccttgc tgggtttcct cactcagtat tagattatgc 001840
001841 cctttttgtc caaccatatt tttacacaac tgttcatact ttattgaacc taagcataaa aatagatatt ttcccctcta 001920
001921 tctttggttc ttcactgata tggtttggct ctgtgtcccc acccaaatct catcttgtag ctcccgtaat tcccacgtgt 002000
002001 tgtgggaggg gctcagtggg agatgactga attatgaggg cgtgtctttc ctgggctgtt ctcttgatag tgaatgggtc 002080
002081 tcatgagatc ctatggtttt ttttttttct tttttttttt tgagatggag tctcactttg ttgcccaggc tggagtgcag 002160
002161 tggcatgatc tcagctcatt gcaacctctg cctcctaggt tcaagcaatt ctcctgcctc agcctcccaa gtagctggga 002240
002241 ttacaggcac atgccaccat gcctggctaa tttttgtatt tttggtaaag atgggatttc actgtgttgg tcaggctggt 002320
002321 ctcaaactcc tgacctcgtg atccgcccac cttgacctcc caaagtgttg ggattacagg catgagccac catgcatggc 002400
002401 tgagatccta tggttttaaa aatgggaatt gccttgcaaa agctctctct ttgcctgcca ccatccatgt aagatgtgac 002480
002481 ttgctccttc ttgccttcca ccgtgattgt gaggcctttc cagccatgtg ggtccgtaag tccattaaac ctctttcttt 002560
002561 tgtaaattgt ccactctcag gtatgtcttt atcagcagca tgaaaacaga ctaatacatt cactctgaag gctcccgggt 002640
002641 atatacgtta aatatatctg tatgcctttt ctcctattaa tctgtctttt ttgagttaat tttttagcaa aacttcagaa 002720
002721 ggtgaagagg agctttccca ttggcccAAA GTGTCTGTAT GTGTAATTGC TACATGGAGG AACAGTTTTA TACATAATCA 002800
002801 TTAATGAAAA CTGAAGTAAA GATCATGGAC CTAAAAGAAC AATTTCAATT CCCTTATCAC ATCATGGTTG TACCTGTAGA 002880
002881 AGCCAGAGAG ACATTATTCA CAGACTCATC TTCAGAAGAG AGTGTAATCT AGGGCAAAAT GAAATTAAGG ATTTCAAAAG 002960
002961 CATGCATTTT TTGAAGATAC AAATTGAGAA AATATACAAG AGCTATAATC AACTTGTGTT TTGGATGTTA GCAATTCTTC 003040
003041 TAACACACCC CAACTTTGAT ATGTATGATG TGTAAAGAAA TACTGAAATT CTGCCTTCTT TTTCTTTTAC AGTATTTTTC 003120
003121 AATTACATTT ATCATTCATT GGTTTTACAT GCACAATAAA AAAGTGTTTT TTTCCAATTA AGGCTCTCTA AAGAACATGA 003200
003201 TGCAGTCCAA TAAGTACATT AATCACAAAT GAGGATGTGC AGCAGAATTG CAGAATTTAG AGAACAGCTT TTGAATTGAA 003280
003281 GATTATGTAA GAATAATAAG AACCCTAGCA AGATAAACCA GAACTAAGTA GGAAATGACA AGAATGCACA CAGACCTAAT 003360
003361 AGCCCTTTCC TTGTCCATCT TGTATCATAG AGAATTCAAA CCAAGATAAA GAAATTTTAT AAATTAAATG AAGATAAAAT 003440
003441 ATAGATGGAT AAATAAATTA TAGATGAAAT AGTTGATTCA ATGGGTTCAG GGACAGCTTG AGGATACAGC AACATTTTCC 003520
003521 TAAGAACATG GAGATTCCAC ATCTAGACTG AAGAGAATAG AATAGCAGTA CCACACTGTG AGGTCATGTA CTCATTGAGC 003600
003601 TGTGAGAACT CCAGAAGGAC CAAATTTTGC TAATGATGGG TATTTTTTAG TACTTTCACA TTCAGACAGC TGTAAATCCC 003680
003681 AGGCCAAATG ATTCAAAGAT GTCTATCAGT AGCAAAAGCT GGCCCTTCAG GAGTTCTCAC AGCTCATTGA GTGCATGGCA 003760
003761 GAATCCTGTT CCCAAAAGCA GATTTTTGAA AAGCTTAGTG ACAAAGAGGA AGTGATGGAA GTGATTATGC AGGAAACTGA 003840
003841 CTTTATGAAA TGGGAAATCC CCAAGTCTGA GATGTTTAGG AAAGTGCTGG AAGCTCAACT TGAGGATGTC ATTGCTGAGA 003920
003921 CTTCAAAGGA ACATAGACTT GGTGATCACA GACAGAACGT CTCTGAACAA ACAGAATGTT AGCTTCAGGT CTCACAATAA 004000
004001 AGCAAGAAAG CCAGTAACCA GGTGCCACTT TAGAATATCG CAAGATATTT CTAAAACAAA ATAGTAATTT GAAGAGGAAG 004080
004081 TATTACTTTA TAAATAGAAA TGTGTCAGAC ATGAGGCCTC TCGTGTTTTA GAAGCAAAAA AACATGCATA AGAGGAGCTG 004160
004161 CATGTTTCAG AATGCCATTA GCAGCAAGAT ATATTAATGT TTAAGGAGAA ATTATAAAAG TCTAAAGAAG AATGGCATAA 004240
004241 TGAAACAAAA TGTGAGGCAG AAGACATGGT AAAAgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtAG AATAAGGTAT 004320
004321 ATGAAAAAGC AAGAGCAATA AGATGTGAAG AAAATGAGAA AATAACTGGT GAAAATGAAA GATTTGTTCT ATTGTGGATA 004400
004401 AATTAACAGC TCAAAATAGA TAACATGAAA ATGAGTTTAA GGATTTTGCA ACTAAGAGTA GGCTGCCTGC TGGGAAGCTT 004480
004481 AGACTGCAGA AACTACTCAG GAGGTCAGTG ATGAGAAACA TTCCCCCGAG ATAGTTTCAA GTTCTTAATT CTAAAATGAC 004560
004561 CGAGCTCATG ACTCCCAGTT CTAGTTTGAT ATAGACAGTG CTGGGTTCAC TCTGGAAAGA TCATATTCAG AAGTTAGATA 004640
004641 TGGCAATAGT GTTAGAATTA CAATCTGCTC CTGAGATAGG CAACTGGGCC TGACAGCAAG GTTCCAAAAC CTACCGGGTG 004720
004721 AAGAAATGAT GACAAAGGAT TTATGTGTTG GTATGTGATT GTATATTATT TTTG
[back to top]

Predicted Small Protein

Name NONHSAT136617_smProtein_1769:2029
Length 87
Molecular weight 9359.6365
Aromaticity 0.116279069767
Instability index 42.9570930233
Isoelectric point 6.95159912109
Runs 13
Runs residual 0.0115411315515
Runs probability 0.0510374628022
Amino acid sequence MHAQRGESRHTGLAGFPHSVLDYALFVQPYFYTTVHTLLNLSIKIDIFPSIFGSSLIWFG
SVSPPKSHLVAPVIPTCCGRGSVGDD
Secondary structure LLLLLLLLLLLLLLLLLHHHHHHHEEELLEEEEEEEHHHLLLEEEEEELLLLLLEEEEEE
EELLLLLEEELLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL
LLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiii
iiiiiiiiiiiiiiiiiiiiiiiiii