NONHSAT136708

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT136708

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1550 nt

Genomic location

chrX+:40715245..40731295

Exon number

2

Exons

40715245..40715961,40730463..40731295

Genome context

Sequence
000001 TATAATTTTC CTTGAGGCCA TCAATAGATG GGCAAGAGAA GGAAAACAGG CTTTACCTGG CTCACAGGCA CCTGTCAAAG 000080
000081 AACAAAATTT CAGCAAATTG AGTTTTTAAA GATGAATTGG CTTTTATCAG TGATTCATGA ACTGGGCAGC ATCAAGTCTA 000160
000161 CAAAATAGAA AAAAGCTCTA ATGAGCTGAG AAGAGTGGGT GGGCTTTATA GGCAGAAAAG GTTGAAGAAA ACAGAAACAA 000240
000241 GGGACAGAGA GTTGGTTATT TCAGTTACTT TCCTTATAGG GAATCATGTT GGCTTAGTGG GTTTGGGCTA TCATCTTTCT 000320
000321 CCTGATTCTT TGGAAGGTCA GATCTTACAC AAGTAAACAG CTTAGGTTTC AGTTTGGTGA TGTGGAACCC TAGCATGAGT 000400
000401 GATTCCATTT TGAGTTGATA TGTTGGAGCC TAGTGCAGGA GCTCAGTCCA AATCAATGGC TTCCCATAAA TTTTATTTAA 000480
000481 CACACCTATG CAAAATAGGG CAGACCTGGG GACAGAATAG TCTTTGTTTA GACTAAATGT TTGTGTCCCC TCAGAATTCA 000560
000561 TATGTTGAAA TCCTAACACC CAGTGTGATG GTATTAAGAG GTGGAACCTT TGGGAGATGA TTAGGTTATG AGGACTCTGC 000640
000641 CCCCATGAAT GGGAATAGTA CCCTTATAAA AGAGACCCCA GAGAGTTCAC TTGCCACTCA TGCCATGTGA GGACACAATT 000720
000721 TTCTTTATCC AGTCCACCAT TGATGGGCAT CTAGGTTGAT TCTATACCTT TGCTATTGTG AATAGTGCTG CGATGAACAT 000800
000801 ACAGGTCCAT GTATCTTTTT TTTATAGAAT GATTTATTTT CATGATTTTT TTTTAAGTGG AAAGAAAGGT TAAGTTTCAG 000880
000881 TAGGCTTGAG TGAATGTTAA AGCATCAACT TGTGTATTCA CTGGGACAGT CCCTCAATTA TGACTGTACA AGTTGCTGAT 000960
000961 GTCCCATGAG CAAAATTACC TCTGTGTCCA GGGACTTTCC TCCTGATTGC AGCTGAAGCT ATAAATATTC TCACCTCTAC 001040
001041 CCCTGCATCA TTGCTGGGCC CACCCCTGCT CCTTTTCCCT TCGTCTTTCT GTCACTGCTG GGAAGCCCCT GCCTTTGCTC 001120
001121 AGACTTCTGG ATGCCTTCCA ACTCATTTTC CTGTCCTGCA CACTCCAATC CCCCATGGTG TAGGAATCCC CACTTCTGAC 001200
001201 AGTAGAGCAC AGTAGGGAGG AGAGAAGGTG AGCTGAGTTT CTGTTCTCAC AAGAAAACTT AGAGTGGATT TTCACCAGGA 001280
001281 AATAACACTC TACCAAGTAA CTGGTTCTTG ACCATCATTA ATACTAGCGT CTCATTTCCT GTGGGTGGCG TGGGCTCTGG 001360
001361 TGGTGTGCTT AGGAACCAGT CATTCATATA GAACTGAAGA AAATCTGTTC TGAATTCTAA GACAGATTTT CCAACAAACT 001440
001441 TTTGGATCAA TACCAAGTTT TAAGTTGTCA GTTCCCTATA AAGCCCTAGG GGTGCCTAGC TTAGCTAAAG GGAAAGAATT 001520
001521 CAAGGTTTCT GTGGGTGAAG TAAGACAGGG
[back to top]

Predicted Small Protein

Name NONHSAT136708_smProtein_419:535
Length 39
Molecular weight 4182.7798
Aromaticity 0.0789473684211
Instability index 43.4107894737
Isoelectric point 7.83648681641
Runs 5
Runs residual 0.0410318559557
Runs probability 0.0485426603073
Amino acid sequence MLEPSAGAQSKSMASHKFYLTHLCKIGQTWGQNSLCLD
Secondary structure LLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLEELL
PRMN -
PiMo -