NONHSAT136878
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136878 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1005 nt |
Genomic location |
chrX-:47249360..47251699 |
Exon number |
3 |
Exons |
47249360..47249813,47250242..47250726,47251634..47251699 |
Genome context |
|
Sequence |
000001 ATGGCAGCTG ATGATAAACA GCCTACACAG ATGGCTGCAG GTTAGGAAGA TGACAAAGTG ACAGAATAAC TAAAAACTGA 000080
000081 AACATGAGTT GCAAATGGGA GCCAGTCAGA AAGTTTAGTC ACTGTTTCAT CCCTCATTTG AACCCAGTAA CACTTGTAAC 000160 000161 ACTTTGGAAA ACTTTCAGTG CAGAAATGTT GAGTTTTGTG ATACACCACC TACCTCTCCT GACACAAAGT CATATATATT 000240 000241 AAACAAGAGG AAACAGATCA GGGCATGTCA TTGCCTCAAA GGGAGCTTAG AGGAAGGTCA AATCAAAAAC CTACCAAGAA 000320 000321 CCTCACTGTC AGAGTGAACA GACTAAGACT AACCAAAATA CTTGAAAAGG TAAGTGGAAG AACAAAGAGA TCAAGAGGGA 000400 000401 AATTGAGAAG GAAAACTGAA AGAGAAATGC TGTATATCAA AAGAAACAAG AACAATTGAC AAAAAGAATG TAAGAACAAA 000480 000481 GAAACAGGAA AGGCAGAATA TAGGGCAGCT GAAAGACATA TGAAACAGAC AACTGCATGG AATCACGCAG AAGGAAATCT 000560 000561 TATACAAGAC AAAGAAGCAC TACTGCAGTC ATTCAATTCT GTCTTTTTGA TGGTTCTCCC TTCACAAATC AGCTTCCCTT 000640 000641 TGGAAGCTCC TTAAGAAGCA GCACAGCAGT TTGAGGCACA GATAGGAAGA CTGACTATAT CCAAGGTATG CTCATCCCGT 000720 000721 GGGGACACTG GATCCCTGTT GGGAACAATA CTTTATCCAT TTCTAGTCAT CTGGATATTG ACTAGCACTT CCTTATTTAG 000800 000801 TAATGCTCCT CCCACACAGG CTTCTTTGAG AATAAAATCA TCAGAAAACT CAAATTGTGC ACCATCTACC AACTCAGAAA 000880 000881 AAAATAGAAC CAGCCAGAAA AAGAGTGCTG GAAAAGCATG AAGACATCAA ACAGGAAGGG AAGATAGACT GAAGATTCAA 000960 000961 GAGGATGGTA AAGATGAAAA TACGTGGAAT GCAAATTCTA CTCAG |
Predicted Small Protein
Name | NONHSAT136878_smProtein_83:241 |
Length | 53 |
Molecular weight | 6165.281 |
Aromaticity | 0.134615384615 |
Instability index | 59.7192307692 |
Isoelectric point | 8.80694580078 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0353588883 |
Amino acid sequence | MSCKWEPVRKFSHCFIPHLNPVTLVTLWKTFSAEMLSFVIHHLPLLTQSHIY |
Secondary structure | LLLLEEELLLLLLEELLLLLLLELLHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo |