NONHSAT137347

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT137347

Source

NONCODE4.0

Same with

,

Classification

sense

Length

917 nt

Genomic location

chrX+:64956768..64961266

Exon number

6

Exons

64956768..64956787,64957040..64957200,64958387..64958479,64958832..64959056,64959591..64959844,64961103..64961266

Genome context

Sequence
000001 gactaagaag gCTCAGCAAG AACTGGAAGA ACAGACCCGT AGGGCTCTGG AACTTGAGCA GGAACGGAAG CGTGCCCAGA 000080
000081 GCGAGGCTGA AAAGCTGGCC AAGGAGCGTC AAGAAGCTGA AGAGGCCAAG GAGGCCTTGC TGCAGGCCTC CCGGGACCAG 000160
000161 AAAAAGACTC AGGAACAGCT GGCCTTGGAA ATGGCAGAGC TGACAGCTCG AATCTCCCAG CTGGAGATGG CCCGACAGAA 000240
000241 GAAGGAGAGT GAGGCTGTGG AGTGGCAGCA GAAGGCCCAG ATGGTACAGG AAGACTTGGA GAAGACCCGT GCTGAGCTGA 000320
000321 AGACTGCCAT GAGTACACCT CATGTGGCAG AGCCTGCTGA GAATGAGCAG GATGAGCAGG ATGAGAATGG GGCAGAGGCT 000400
000401 AGTGCTGACC TACGGGCTGA TGCTATGGCC AAGGACCGCA GTGAGGAGGA ACGTACCACT GAGGCAGAGA AGAATGAGCG 000480
000481 TGTGCAGAAG CACCTGAAGG CCCTCACTTC GGAGCTGGCC AATGCCAGAG ATGAGTCCAA GAAGACTGCC AATGACATGA 000560
000561 TCCATGCTGA GAACATGCGA CTGGGCCGAG ACAAATACAA GACCCTGCGC CAGATCCGGC AGGGCAACAC CAAGCAGCGC 000640
000641 ATTGACGAAT TTGAGTCTAT GTAATGGGCA CCCAGCCTCT AGGGACCCCT CCTCCCTTTT TCCTTGTCCC CACACTCCTA 000720
000721 CACCTAACTC ACCTAACTCA TACTGTGCTG GAGCCACCTC CTTCTCTGTC TCATGTGTGC TCTTCTTCTT TCTACAGTAT 000800
000801 TATGTACTCT ACTGATATCT AAATATTGAT TTCTGCCTTC CTTGCTAATG CACCATTAGA AGATATTAGT CTTGGGGCAG 000880
000881 GATGATTTTG GCCTCATTAC TTTACCACCC CCACACC
[back to top]

Predicted Small Protein

Name NONHSAT137347_smProtein_563:814
Length 84
Molecular weight 9055.1271
Aromaticity 0.120481927711
Instability index 41.156626506
Isoelectric point 8.29107666016
Runs 7
Runs residual 0.0556894243641
Runs probability 0.048123754006
Amino acid sequence MLRTCDWAETNTRPCARSGRATPSSALTNLSLCNGHPASRDPSSLFPCPHTPTPNSPNSY
CAGATSFSVSCVLFFFLQYYVLY
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLEEEEEEEEELEEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLHHHHHHHHHHHHHHHHHHL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiTTTTTTTTTTTTTTTTTTo