NONHSAT137582
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137582 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8356 nt |
Genomic location |
chrX+:73207976..73216331 |
Exon number |
1 |
Exons |
73207976..73216331 |
Genome context |
|
Sequence |
000001 TTTCAGTGGT CCttttttag gtagttatat ttcttgtgaa ataacattta tctgaacatt agtaactcct tcactgtcat 000080
000081 tttgctctca ttttcctgtc tttatagcaa gtaaaattaa atGGAGTAAT TTGAAATAAA TTATATAATA AATGGCATTA 000160 000161 AAATAACCCC ATTTTAAAAT Attgaggtat aatttacata cattaaaatg catcataggt gttccatttg acaaaataga 000240 000241 tcacattttc tttactcctg aaaatttcct tgtgctcctt tccagtcagt tctcctcttc ccagtagcca CTTTGTGGTA 000320 000321 TAATCCCAGG TTCCCAGGTT AATGAAATTA TTTCTAACTG TGTTTTTAAT ACATTCACAT TTTTCTTGCT AAATTATATG 000400 000401 CCAAAAaatg tccaataaat gttaagcttt ttaggatgat ggcagtttgg gtaattcatt gctttcttat ttatactttt 000480 000481 ctgtattgTG ttttgttttt tttttttttg agacaaggtc ttgctctgtc acgcaggttg gagtgcagtg gcataatcat 000560 000561 agctcactgc agcctcgacc tcccaggctc aagaaatctt accacctcag cctcccaagt agctgagatt accggcactt 000640 000641 gctaccacat ctggctaatt ttgtgttttt ttttgtagag acagggtttt gccatgtttc ccaggctggt ctcagggact 000720 000721 cctgggctga agcaatctgc cagctttagc ctgccaaagt gctgggatta caggtgtgag ccatcatgcc tggccTTTTT 000800 000801 TGTATTATTT GATTTTTTAT TTTAGGTAGT AAGTCTTAGG TTAAAAAAAT CAAAACCTGa ttattaatta aataagaaaa 000880 000881 gaatattttt taaaaaGGCA AATGCTTCAA AGCAAAACTG TCTTCCATCC TAGGAAAGGT ATGAACCAGA AAAGAGCAGG 000960 000961 TTCAAAGAGA AAAAGGGTAT GAAGTGTTTC TTAGATTAGT GTTTGTCATA ATTTTGAGAG CTGATGATAC TAATCCCTGA 001040 001041 AATAGAGTAA GGAAAATTGA AAAAAATAAA AGAAAAAAAG AGCTTTGTAG TTATATGGAG TTGGTACCTT TCTGTTTGTT 001120 001121 ATTATATATG AAATATTGTA AATTTCTGGC ACCACCAATC ATAACATTTA AGTGTATTCC AGAGCTGAAT ATAAATTATT 001200 001201 CTATTTTTCA AGTTAATATA TAGTGTTGTC AGTATATGTT GAATGAAATT GCCCCTTAAG TTTTCATTTA CATCTTATAT 001280 001281 TTATCTGGTT TTACTAATTA ATTTATTCTG CATTTTTACT GAGTGTAGCC TCAGTAAAAA CCCTAATGTG GGTAGGCACT 001360 001361 GAAATTGTTA TTTGAATAAC ACATCCCTGT TTGCAGTGTG ATATgaagaa ggggaacaga ggttcaaaaa aacagagaaa 001440 001441 gcaaatagaa aataagtaaa tgggagtctt aagcaactat attgttaatg ggctaaacac ttcaattaaa agtcagagat 001520 001521 tatcagaatg gattaaaaag caagacccat ttatatgcta tcaacatgaa atttacttaa aatataaaag tacaggctgg 001600 001601 gcacggtagc tcacgcctga aatcctagca ctttgggagg ctgaggtggg tggatcacct gaggtcagga gttagagacc 001680 001681 agcctggcca acatggcaaa accccatctc tactaaaaat acaaaaaatc gccaggcatg gtggcgggtg cctgtaatcc 001760 001761 tagctacttg ggaggctgaa gcaggagaat tgcttgaacc cgaggggcag aggctgcagt gagccaagat tgcgattgcg 001840 001841 ccactttact ccagccttgg caaaagagtg aaaatccgtc tcaaaaaaaa aaaaaaaaaa aaaaaagaaa cccttgaagg 001920 001921 tacagataag ctgggggtgg ggtagtgcta ttaatacata caaaatagac cataagacag agtattatca gaaataaaga 002000 002001 gggatttttc ataatgttaa aagtatcaat tcatcagaaa gcggtagcaa tcataaattt atatatgatt ataaacatat 002080 002081 ttttattaaa aatatataaa gtggctgggc gcggtgtctc acgcctgaaa tcccagcact ttgggaggct gaggcggggg 002160 002161 tggatcacct gaggtcagga gttcaagacc agcctggcca acatggcgaa acccggtctc tactaaaaat acaaaagtta 002240 002241 gctgagtgtg gtggtgggcg cctataatcc tagctacttg ggaggccaag gcaggagaat tgcctgaacc tgggggacgg 002320 002321 aggttgcagt gagctgagat tgccccactt cacttcagcc tgggcaaaat ggtgaaactc tatctcaaaa aaaaaaaaaa 002400 002401 aagtatatat agcaaaaatc gacaaaatta agaggtaaaa gatactttta caattagtgc tgaagatttt taccacccta 002480 002481 ctctgaccaa ttgatagaat ttctagcaaa aaaacaaaat tagtaaagac atagatgatc tgaggaatac tacaaaccac 002560 002561 ctcaatataa ttgataagta ttgaacacta cttccccgaa ttgtgaagaa gatattctta tcaattgtac atcatatatt 002640 002641 caacatagac caaatggtgg accatgaaat atgccttgat aaattttttg tgtgtgtctt gataaattta tttatttctt 002720 002721 gagacagtct cacttgctct gtcacccagg ctggagtgca atggcgcgat cttggcttac tgcaacctcc gcttcctggg 002800 002801 ttcaagctat tctgcatgcc tcagcctccc gagtagctgg tattacaggt gcatgctacc acgcctggct aatttttgta 002880 002881 tttttagtag agacagggtt tcaccatgtt ggccaggctg gtctcaaact ccagacctca ggtgatcctc ccacttcagc 002960 002961 ctcccaaagt gctgggatta cagatgtgag ccaccatgcc cagctggtaa atttaaaatg attgaaattt atatatgttc 003040 003041 tgtcaccaca atggaagtaa aattaaaata gaaattatta aaatatctag gaatgatcca aatatttgga aattagacaa 003120 003121 cacaagttta aatgatcatg agtcaaaggg aaatcacaat tagaagacat ttttaatcga atggtaatga taatataatg 003200 003201 tcaaaattca tggaatgtag ctaaagcagt gcttggaggg caaattatag tttaaatgct tttattataa aggaagaaaa 003280 003281 gtctaaatgt cagtaaccaa agtttctacc ttaggaagct agaacaagaa cagcaaagta aacctggagt aagtacaagt 003360 003361 aaggaaacaa tagagtagga atcaatgatg tggaaaacag ataatagaga aactttaaaa agccaaaatc tggttctttg 003440 003441 gtaagatcaa caacagtaat aaacccttat cttcagtgaa caagaaaTTG ACAATGCGAC ATGTTGTAAT AGTAAAggaa 003520 003521 taaagtacat agtgtggaac acagaggctg atctgaattt ggttttcaaa ggtggtttca gagaggtggt aaaatttgtg 003600 003601 tttggctttc aagaattagt gtaagttttt cctgatacag attgggaaaa agaatattct gagaggaaat aagagcaAAA 003680 003681 TAATTTTATT TTTCAGGCTT TTGGCATATT TAGAACCGTA tttttatttt tttgagacag agtcttgctg gagtccatcg 003760 003761 gtgcaatctc ggctcactgt aacctctgcc tactggttca agcagttctg gtgcctgagc ctcccaagta gctgggatta 003840 003841 caggcatgtg ccaccactag ccccagctaa tttttaaatt tttagtagag atggatttct tcatgttggc caggctggtc 003920 003921 tcgaactcca agtctcaagt gatccacacg ccttggcccc ccaaagtgct aggattactg gcgcgacccc acagcacctg 004000 004001 gccTAGAATG GTATATTGAC TTTATCTGTG GCATATGGGT TATGTTaggt ggagagcagt aggtgatgca ataggaaaag 004080 004081 cagtttgagt ctagagtgta cagaacctag agtaccttcc ttgataactt ggactttatt ctgtgtaaaa tagcaagcTT 004160 004161 AGCGTCTAAA GTTTTTAAAG GAGTTTTTTA AATGAAATAT TTCAAACAGA AAATACATAG AATGACATAC TGAACACTTA 004240 004241 TTACCGCTAC CCTGCTTTAA CAAATCTTAT ACCTTACTAT ATTTGTTTCA GAttttaaga aattaataca tcatagatac 004320 004321 aattgaagct ttgtaccttt ccatctcata ccaccatgaa gttctattct gaagtcatat atccttacca tgcattttta 004400 004401 aaatactttt actgtatagc tatatactaa taaaaaggtg gcattctcca tgttattaaa gtttcttaaa aatgctatct 004480 004481 atattttact tattctgcaa cttgtttttc tcacttatta ttatttttga CTTATGGGAT ATTCCGGAAG TTTGGACTGG 004560 004561 TGTAACCACA GTAGTTATTT ACGGCCAGTG TCCTTTCTTC TTTCTTTTTT GAGTTAACCA GGATACATTT ATTAAATATA 004640 004641 TCCAGGATAA ATATTCCCAA AAACAAATAT TTGGTAAATA TGGCAAACTT ATTCTTTGGC AAATTAGCTT TTAGCATGTT 004720 004721 GGACTGCTTT CCATCcctat taggagtatt ataaggatta aatgaagtat taccaacaaa aaggtactta gcaaaattct 004800 004801 cagtaaacat tggttataat CCCTCCAACA TTCAGACTTA AGTTCTGCCT ATTCTCTTTC CTCAGTATTC TTTATTCCTG 004880 004881 TCCATATAAc cattgtcctt ttgtaggcct tcactacctt aatgtggact atagcaatag tcacttgatt ggtctcttgg 004960 004961 cttgttcccc tccaatcttg ttctctacac tactgcaagg gtgatctgtc taccacatag attttgaatt atcatctaca 005040 005041 gtagtaaaac agttttcatg gcatacaagc ttcaataatt tagtctagat attccgcttg atctcttttc acctcttttc 005120 005121 catttatctt ctagcaccac tgcagtgctt gtagttcctt aaatatgcta ttctttttga aaaagcagca aatctctgtg 005200 005201 cagttgcctt tctaactgga atatcttccc ccttcttgtg ttctcacaaa attcttattc atctttcaag ttctagctca 005280 005281 aatgccactt ccttgtaaag gttttcctga tttccttaag cagatttggg ttacgtttct agggttctgc tgctctttgt 005360 005361 acatgcttct attataatgc ttatatatat tattgtagtt gttttttaat tttgtctgtc attctaatag actgtaatct 005440 005441 ccttgcagga ggagatctgt cttttcatca tttatataat aatgactatt gtacctagaa tataagtcat tgacatttgt 005520 005521 tgaattaaAA AAATTCAGAA ATCTATTTAC AGCCCTCTCT ACTGCCTTCC CATGacacct ccattttaca gatcattaag 005600 005601 ctgaagccca atgaaatgaa gctatttAGT GAGAACTCAT GCCTCCTAAC TCCAGATCTA TTACTTTTAT TCTTATATTG 005680 005681 TAGAGAATAT TCTGTTTAGC ATGTATATAC TAGTTATTTA TATTATAAGA AACAGTCTTG TCAGTATTCT TCCTTTCATC 005760 005761 TCTAGGGAAT AGGTAGAAGG GTATAGTGAT TTTATGAGAT TTGTGTTTTT TTTTCCTGTT TCAATCATTC AGATGCTTTT 005840 005841 GTTTTCTAGC AAATTCAGCA AAATTCAAGG TTTTCTTCAT GTCATTCCTT TTCTTTACCC TCACAGAACT CAGGTAGGAT 005920 005921 TGAATGTCTG ATGCATTTAG TCcagttgtc ctcaaccagg ggtggttttg gccccctaga gggcttttgg caagatgttt 006000 006001 agaggcagtt ttTTAAattg atacataata tttacccata tttatggggc acatgtgata ttttgataca tacataccat 006080 006081 gtgtaattgg tttatctgtc acctcaaaca tttatcattt ctttgtattg gtaacattct acatctttta gctattttga 006160 006161 aatatacTTT CTGTGGGTGC TTCCTAAGCA CCCTTACTTA TAACCTTata accacagtac atttgtcaac ctcataaatt 006240 006241 tacactgata tcatactttt gtctaaacta ccttccatgt tttataaaaa tgttttctta atagcatttt taacctcttc 006320 006321 aatactggat ccagtctaga agcaggtatt acatttggtt gtcatgtatt tttagccttc tgtcatctat ggtgtttcca 006400 006401 cagccttgta aaactgtagt acactatccc aaccagacta ttcacactgt tacagtctag atacagaatg gtttcatGAT 006480 006481 AAGGTAGTGA GACATTTTAA GATATATTCC CTGTGGATTT GGCATTCATT GATTACCCTT TTCCTTGCTC ATTCTTTACC 006560 006561 TTGGTTACTT TGCAACTGTA GTACTCCTGC TAGATTTACT AGTCAGGCCT TAGCAAAATA CTGTAAGCAC AAGACCTCCC 006640 006641 TTCTCCCTTA TTTGTTTAGT ACCATGAGGG ACTCATATTC CTACCCtttt ttttttgaga tggagttcgc tcttgttgcc 006720 006721 caggctggaa tgcaatggca tgaccttggc tcactgcaac ctctgcctcc ccagttcaag tggttctcct gcctcagcct 006800 006801 cccgagtagc tgagattaca ggtatgcgct accacgcccg gctaattttg tatttttagt agagacgggg tttctccatg 006880 006881 ttggtcagac tggtcttgTA ggagaaatag acttcactaa aatattacag ccaattagta aaaataagac agtaaatagt 006960 006961 aacaccttgt cctggagtga tagtagccag tattgctacc atatattact gacaatgttt aattttcaac aacaaaaata 007040 007041 attgagagat aaagagaagt aagaaaacgt gaccttatgg ggaagaagac tggcaaaaca tctcaacttt gaaggcataa 007120 007121 gatgtgttac taagcagaca aatatttcaa attggccatt ataaatatct taaaagaact agaggacacc atacctcagg 007200 007201 aggcaatgat ataattacaa taattttgca actagagaat ataaataaat aggtaagaat tatagaaaag aaccatatgg 007280 007281 aaatctggag ttgtaaagta taataacaga aattacaatt cattagagag gtttaatact agattttaac tggtagaata 007360 007361 aacaatcatt gaatttgaag atagattgat agaaatcacc cagtttaaaa aatacagaat aaagaagtaa gtaaaatgca 007440 007441 gtttcagaga aatggcagaa gccattgaga ataccaacat atgtgcagtg gtagtgccag aacataagga caacgagctg 007520 007521 agagaaaaaa tatttaaaga aataatacct gaaaattttc tatattatga aaaaaaaatc caagaagtgt aaagaatttg 007600 007601 aagtataata attgcaaata tattccccct tagacacatc aaagtaaaat tatgaaagta aaaaaacatc ttggaagcat 007680 007681 gaagagaata atggctgata tacaaggaaa ctctaataat acagtaataa ttaaggccac agtggaggtg tatgacatat 007760 007761 taatagtgta gaagaagtaa attcaaaatt ttacctgaag cacgactgac attcttaaat caaagtaaag acattgctag 007840 007841 ataaacaaaa actgggaatg tgttcttagc agacccacct tgtaagaaaa gctagttttt gagaatgaag aatactgacc 007920 007921 ccaaactgta attgaaattc ctatgaaaaa tcagagtacc agtcataatt atgtaataat tatagaggct agtataaatg 008000 008001 catatttttt atgtattagc tggcatatat gcctatacac tgtatactta taaatattca tatatgtgta ttgtgtgcag 008080 008081 tatttccata tttgtatttg tgagcttaca acatatagaa atgagatcta tttaataata tcacaaagta tgtggttgag 008160 008161 aacaaaactg ttgtaataag gaaatgaatc tttttttttt ggagacagag tttcgctctt attgcccagg ctggagtgca 008240 008241 atggcacgat cttggctcac cacaacctcc acctctcagg ttcaagcgat tctcctgcct cagcctccca agtagctggg 008320 008321 attacaggca tgagccacca cacccggcta attttt |
Predicted Small Protein
Name | NONHSAT137582_smProtein_7451:7591 |
Length | 47 |
Molecular weight | 5479.2405 |
Aromaticity | 0.0869565217391 |
Instability index | 44.4608695652 |
Isoelectric point | 4.78302001953 |
Runs | 9 |
Runs residual | 0.0342908902692 |
Runs probability | 0.0447015643095 |
Amino acid sequence | MAEAIENTNICAVVVPEHKDNELREKIFKEIIPENFLYYEKKIQEV |
Secondary structure | LHHHHLLLLEEEEEELLLLLHHHHHHHHHHHLHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |