NONHSAT137719
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137719 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2553 nt |
Genomic location |
chrX-:79503436..79590863 |
Exon number |
11 |
Exons |
79503436..79503997,79523083..79523102,79523201..79523208,79523231..79523453,79523615..79523751,79545163..79545270,79546376..79546523,79565578..79565732,79574328..79574869,79589591..79589701,79590322..79590863 |
Genome context |
|
Sequence |
000001 AGAAACAGGA AATGGGATTG CAAACCTAGT AGCTGCGCGT GCCGGCTATT CAGGACTAGC GCAGGACTCT GGGCGACCTC 000080
000081 ACATCCCACT CGTGCTGCTG CCCCGGGCAC TCGCCTCCCG CGAAAAGTCG TGGGACCACG TCGAATATGG GGAGTATCCT 000160 000161 TTCCTGTTTG AAAAGCTGCT CTTAGGGCAT AGGGAAAGGT GGGGAGGGCA GAGGTTGGGA CCCTGGGAGG TGCCTGGTAG 000240 000241 TGACCTTTTT GGTCTAGCTG TGGAGGGCTG AGAGCGCTGG CACCGATTGG TGGGCTCCAG CAGCTTGGTT TTAGTTTTTC 000320 000321 TGTTTTTTGT TTTTTTTTTT CCTGGGACTC GCTGCCATCC TAGAATCAGG GGAGGTGGGA CTGCTTTAAA GAATGGTCAG 000400 000401 GGGAGTCGCC GCACTGGTTT GAGATTTAGA GCGCGAGCCC TCCCACTCTG AGAGCTTCTG TCACCTGTCC TTTAGTGAAT 000480 000481 TCGTCCTCTT TGAAATTGTT GGGAAACTGT GCGAGAACAG AGGCAAGGCA ACAGGAGTTT GCGGTCTACT TATCACTACA 000560 000561 GTTTAAAGGA TAATAAAGAA AGTGTAGTTG TATTAGCATA ATAAAGGGAA GAGCACTGGA ATATGAGTCA AATCAATTTC 000640 000641 TAATCCCAGT TTAGTACCTC AGTTGGAAAT GCAGAAATCA CCTGTCTTCT GCATCAATCA CTCTGGGAGC TGCAGACTGG 000720 000721 AGCTGTTACT ATTTGGCCGT CTTGGGATAA GGTTATATAT TGATCAGTTG ATGAAAATGT AACCACCTAT TCCTGTATTT 000800 000801 CCCCTAGAAG TAATGGTTCA GTATTTGCTA ATTTGGTATT CTCAGCAACT TAATTAGACC ATGACTACCT TGGACAACAT 000880 000881 GAATCAATTG TACTTCCTTT GGAAATTAGT GTTTTGTTTG AAAATTCTTT GGAGTCTAAT TTTAGATCTT TTGTAAATTA 000960 000961 TCTGAACTTT CACTATGGCT CTTTTAAAGT TGTTATTGTC TTCGGTAGTC AGAGGCTTAC TGTAATATAT CTAGTGTAGA 001040 001041 TTTATTTTCT GCTTGGCATT TTTTATGCTT CCTGAATTAA AATATTAAAG GTTACTTTCA TCAGTTATGC GAAGAGTCTC 001120 001121 ATGCATCATC TCCTTGAATA TAACCTTTAC ATATTTTGTA TTACAGTTTG TATTACAATC TGTTTGTATG CAATCGTAGT 001200 001201 TATGTTGGGG AAATAACTTT TTGAATAGCC TTATCCTTAA TGGCTCTTTT CAGAGCCATT ATTTTACTTG AAGTTTGCTG 001280 001281 CAAAAGAACT TAATAGGAAT GCCAAGAAAT GTGATAAAGA AGAAAAGGCT GAAAAGGCCA AGATTAAAAG GCTATTCAGA 001360 001361 AAGGCAATAA GGAAGCTGCA AGAATACATG CTGAAAATGC AATCCACCAG AAAAATCAAG CAATTGATTT CTTAAGAATG 001440 001441 AGTGCTAGAG TTGGTGCTGT GGCAGTCAGA GGTCAAAATG CAGTAACAAT GGGCAGGGAC TTCTGCCTTG ATGGACAAAT 001520 001521 TCAAACACCA GTTTGAAACA CTGGATATTC AAACACAACA AATGGAAGAT AAAATGAGTA GCTCTACAAC CCTAATAACA 001600 001601 CCACAAGGAA TCAATTTGTT ACAAAGTTAA CTAAGTTGTA TTCATACTCA AGCTTTTCAT TTTCCACACT GGAAAATGCT 001680 001681 CTCAAGCAAG AAGATTTATG GTAAAATAAT TCAACTGAAA TTTCCAAAAT GAAATCTGTC TATGAAAGCC TTCCAACTTC 001760 001761 AGTTAGAAAA GTCCAAATTG AATGTTAAAG GGACATTTAT TCATGTAAAA TGTATTACCT GGACTGTTTT ATGTTCTTAA 001840 001841 ATTTTGTAAG GGAAGAAAAA AATTCTTCAT TTAATATGTT GCTTGGTCAT TAAAGTTAGG TCCATATTCC AAATGAAAGT 001920 001921 TCATAAAATG AACTCTATAT ATATATTTCT TAGAAATCTT GCTGGCTATG TTCTGGGTGT TGAAGTAATA ATATAGACAG 002000 002001 TTGCCTCCTA TATCTACATT TATGCATGTT CTTAGCTCTT CAGAACATTA ACATTAGTAT TTTCTTAGCT TTCTAGGGTA 002080 002081 CAACATATTC ATCTGGATTA GAATTATGCT CTGACTCTAC TAACTGTGTA CCCTCAGAGG AGTGTTAAAC TCTCCTGAGC 002160 002161 TTTGGCCTGT TTGCAAAACA AAAAGTAATT ATTACCTTAA GGAGTTGTTT TGAGGATTAG ATGAGACAAT GTATGTCAAA 002240 002241 GTGCCTGTTT CGTGCTGTTG TTCCTTTAAT AACAATAACA ATAACAGCTA ACAATTTTAT AGTATTTACT ATGTATCAAA 002320 002321 CATTGTTATA AGCACTTAAT TCCCATTAAC TTACATAATC ACAATGACCC TGTGAAGTAG ATACTATTAT TATTCCCACA 002400 002401 TTATAGATGA GGAAACTGAA GCACACAGGA ATTGACATGC CTGAGGTCAC ACAGCTGTGA AGTTTCAAAT AAGCAGCTTG 002480 002481 GCTCTCCGAT TGTTGCCTAC CTCTAAGAAT TTTCAAAAAA CAAATCCATA AAAAAAGGAA ATTAAAGTTT TGA |
Predicted Small Protein
Name | NONHSAT137719_smProtein_668:781 |
Length | 38 |
Molecular weight | 4312.2213 |
Aromaticity | 0.0810810810811 |
Instability index | 40.1 |
Isoelectric point | 9.38262939453 |
Runs | 5 |
Runs residual | 0.0446317877511 |
Runs probability | 0.0301183536478 |
Amino acid sequence | MQKSPVFCINHSGSCRLELLLFGRLGIRLYIDQLMKM |
Secondary structure | LLLLLEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |