NONHSAT138214

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT138214

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3676 nt

Genomic location

chrX+:112285955..112763885

Exon number

4

Exons

112285955..112286033,112316311..112316346,112355178..112355293,112760444..112763885

Genome context

Sequence
000001 ATTTTGTCTA TTTTTGCTTT GGTTACCTGT GCTTGTGGGG TATTTATTAC TCAAGAAATC TTTGCCTAGT CCAAAGTCCT 000080
000081 GATGTTTTTT GCACAAGGTA GAAGATGGGT GCATCTGGCT TCCGAGGCGA TCGGGCAGTG TCAGTCTTCA GCTGCTAAGC 000160
000161 CGAGAAGATC TGGGAAGGAG TCAGTCGGAG AGCCTTGGGC CAGAGTTCCA GGGGCTCTGG AAGTGGCTGC CAGTGAGCTA 000240
000241 ATACTCTGCT TGAGATTCAT TAAGTCAAAG ACTGACATTT CCTCTGACCA CAGACTCGAC TTCAGTCTGC AGATATTATC 000320
000321 CTGCAATTCA GCACACATTG CTATCTGCTC ATCGTGGAGG AAAAGCAAAT TGCAGATATT TTACTCTGCC AAATCATTAT 000400
000401 GTGCTTAGGA TATTCAAGGT TAGAAAAAGC TAAGTGACAT GTACTTTTAG ATACTTGGCA TTGTAATTAC AATGTAGTGC 000480
000481 AAATCAGCAA GTATTTATTG GGTACTTATG TGTCTAGCAT TGTAATCATG GCTTTTCCTT ACACAACACT TGACATAGCC 000560
000561 AGATGGATAC AAGAGATTTT CTGGGCAGAA TTTCTTCTGA AATGTTCCCT CCACTGGCCC ATTATTTTAC TATTGGAGCC 000640
000641 TTTTTTTTTT GGATCTAAAA AAATGTTGGT TTTCAGATTG AGGGTAATCA AGATACCCTG GTTATGGCAA TTAGAGCAAG 000720
000721 CATTGTAGTT GTCATTGGCA GGAAACAAGA GTCAGAATTG GAATTGAGAT GAGTATCAGG AGTGAGAGAA AGTTGTAGTT 000800
000801 TGAGAGAGAA GATGTATATT AAATGAGAAG GGAGAGAAGG TAGAGGTCAT CTCTGACTAA CCTTCTCTAC TTCTTAGTTT 000880
000881 TGCTAATAAT CTGTCTTTCA TGTGGAACAG GGAAGCTCTA CCTACCTAAA TTAGTATGAT GTTGTGTTAA GGAGTGTAAA 000960
000961 CTTACAAAAA GAAGCAGAGC CAGTTATGTC CAAGTTGAAG CAAAAAAGTA CATTTCACTG TTACAGACTT CTTTGATTAT 001040
001041 CCAAGCCACT GCTTTTTTTC TTTTAAAATG GATAATGTTG AAAAGTTCAG AATCTAGCAA ATTTGTGAAA TGTCACTTTG 001120
001121 GGTAACATGT GCTAAATAAT TCAGAGGTAC AATTAACAAA ATATCTATAT CACAGTGATT GAATGTTCTC AACTAGTTTG 001200
001201 TCCCTTTTGC TTCTCTCTCC TTCTGGCAAG TCTTTTATAA GTTGGAACAC TGAAATTGCA TGCAGATTTT AAAGACATTG 001280
001281 ATGTATAATT CAATAGCAAC TCATATTGTT TTTAAACATC AAGGTTTCAC TACTGATTTT CTTCAGAGAG ATTTCATTTC 001360
001361 CACATTTGTC ATTCATAGAG AAGACACAAG GCGACCTCTT TTGAGGTGAT TTTCATGAGC AAATGATAGA AAACATGAAG 001440
001441 GAAAAATATT ATTTCTTGTG TTTTATTTGT AATACCCTAT GTATCTGCCT GCACTCTAAC AGTTGACGAC ACAAGAAAGG 001520
001521 AAGTTTGATG AGAAAGATGT AAAATATCAA GATGATTTTT CATCATAATA TGTAGTCAGA ATCTTGAGAA TTGGGAGGAA 001600
001601 AGGTAGAGAA GGCCAGCAAG ACAGCATGTT CATGAGTATG AAGGTGGGCT CAGAGTGAAC CAGGTATTCA AGTATTTTAT 001680
001681 AATACCACGC CACCACCTTC TCGGATGATG TTATACGGAT AGTGAGAGAT TCATTACTAT TTCTGAGTTG GAAAGTAGAC 001760
001761 CAGCAATCCT GTAGTATAAC ATTTCATTTC AAATCATTCA AAGTGGCTTG AAATTATACA CTGGCTGATT TTAAAAGGTG 001840
001841 GGTTAGAATC ATAACTTATT TGTTTTAAAG AAAACTATGT CATCTGCTTG CATAATGATT TTTCACTTAA TGTTTTATTC 001920
001921 AGTCTTTCTA TATAATTGAG CCTAATTGTT CTCTAATACT GAAAGGACTC AGCTTTATAT GCAGCCATCC CTATTTTTGA 002000
002001 TATTTCTATG AAGGTGCTTT TGAATAATAA TGAATACGCC TTTTAGATTT GTTGTAAGTG TTTTATATTC CAGGACTGCT 002080
002081 ACTTATACTT ACTTGTATTC TTGGTTTATA ACATGTAGTA CTCAGGAGAA TAAACCCTTG GGAATGCTAT GCAATAAGGA 002160
002161 TTCTAAGAGA CACTTATGTC CTATTTATTT TTATAGTTTC TGTAAGAAAG TGCTTATTGG GCAGAAACAA CCAGGATAGC 002240
002241 TTACAAATAT GAATGCCTGG AAAGATCCCC AGGGTCTTCA TTATTTATGT TGTTTGATAA GCACATTCTA ATTGTTGATA 002320
002321 GGTTAAGGCC AGTGTTCTTA GACTGATGTT CTCAAGGTTT TGTTTCTTCT ACCTTAAGAG TTAAAACATT CAAGAGAATT 002400
002401 AATAGCATGT ATTGAGCAAT TACTACACCA GAGATACAAA GGATGGGTAA TTAGAGAGCA AGAAGAAGTA TTTGAATTTG 002480
002481 GAATAAACAG TACAAATAAG AGAGACAGAG TGCAGGATAT GTTGTACATC AGTGTTTGCT TGAAATGGAG GAAGACTTTC 002560
002561 CTGCAGGATG AAAAATGGAG AATGGCTAGA AAGGTTAGAG TTAGATTGTA AAAAAGCCTG AATGTTAAAC TAAGCAATTT 002640
002641 GTTTTACCTT ATAGGCAGTG GGGAGACATG GAGTACCATC AGTAGTTCAC TTATTTTCAG AGTAGAAGCA TTTTGGCATT 002720
002721 CTATTATCTA TTACTTAATA TAGAATGCAG ACATTTATTT GGAAATGCAA TAGTCATTTA ACTCTTAGCA TGACAGCTCA 002800
002801 TGTGATATAC AGTATTACAT TTTCCCTATA TTAAATACTA TACGAAGAAT AAAATCGATT TATATTTCAA CTCTCTTTTT 002880
002881 ACTTGGAGAT GGGGGTGAAT GTTGTTGATC TTCATCTTTA GGCAGTAATA CTGATCATTA TCATTACCTT TATTAAATTC 002960
002961 CAACAAAGTG CAAAGTGTAA AACATACAAC TTGGCAAGGG AGTCCTTCTC ATGGTTGAAT AATTGGAGAT ATTTCAAGGT 003040
003041 GAATTATCAA ACTATTAACC TCTTTGGATT TTTCTTTTGG TCAGAATCAT TAAAGGGACT GGTATTTGGG TGAGATTTGA 003120
003121 ACTCTGTGAG GTCAGAAACT ATGACATACT TACTCTACTA TTGACAATAT CCAGCACATA ATTATATGCC TGGCACATAT 003200
003201 TTAAGAGACT AAAAGGAACT TATTGAGTGA ATGAGTGAAT GAATGATATT CTGGACTTCT GTGATTTTTC CTAATGTGAT 003280
003281 TTCACCCCCC TTTCACTTAA GTCACCTATT GGCACTTGTA CATTGTTATC ACTAAAATTT ATCCACTCTT AAGACCTGGT 003360
003361 AATTAATGCA ACACATGATC ATGAATGGAT CTCAGGCAAG AAGGAGCCAT TAGGAGGAAA GTCTTAGCTA GGTGTGGTGG 003440
003441 CACACAACTG TAGTCCCAGG TACTGGGGAT GCTGAGGTGG GAGGATTGCT TGAGCCTGGA AAGTCAAGGA TGCAGTGAGC 003520
003521 CGTGATAGTG ATATTCGAAT AACATCTTTA GATAATAGAA TTATATCAAT GTTAATTTTG TGACATTGAT CATTGTTCTT 003600
003601 TGATTATGTA AGATGTTAAC AGAATTTTTG CAGAATCTGG ATAAAGGTTA CACAATAATT ATTTTATAAT TTTTGC
[back to top]

Predicted Small Protein

Name NONHSAT138214_smProtein_527:727
Length 67
Molecular weight 8096.7486
Aromaticity 0.19696969697
Instability index 45.4075757576
Isoelectric point 9.03363037109
Runs 12
Runs residual 0.0312103066594
Runs probability 0.0539436495319
Amino acid sequence MAFPYTTLDIARWIQEIFWAEFLLKCSLHWPIILLLEPFFFGSKKMLVFRLRVIKIPWLW
QLEQAL
Secondary structure LLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHLLLLLLLHHHEEEHHHHEELHHHH
HHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
LLLLLL
PiMo oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii
iiiiii