NONHSAT138412

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT138412

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2138 nt

Genomic location

chrX+:121385515..121389909

Exon number

2

Exons

121385515..121387589,121389847..121389909

Genome context

Sequence
000001 TTGAGGTAAG AACATATTTT AGTAAGCTCA AGAATAGTTT TCTAATTCAT TTTAATTCCT GGGAATTGAT AATGTAAGAA 000080
000081 AACAAACAAG GTAGCCAAGA AAGTGGTCTT CCTTATTGCA GAGACAGAAG GCAACAAATT AGTATTAATT TGTTATGAAT 000160
000161 GCATCACAGA AGGTACAAGC AAAATTCCTG TTACATATTT GAAAATAACA ACAGAAATTT GCAACATTAT CTGCCATTAA 000240
000241 ATATGTGCAG AGAAATCAGG GCTAGTATTG TCTTAGaggt aacttgaagg ttacttgaag gttacttaaa ggttacAGGC 000320
000321 TGGCCAAGTG GAACTAGGCC AATACTTGCA GCCTTACTTT GTTTTAAGTT AAAATATAAC AACTCTATGG AAATGACTTG 000400
000401 TCCAATTGTT CAATCCTTGC TAAGTCTCTA GCACACATTT TTATTCTGTT GATACTTATT TCGTGTGTGA TAATAAACTA 000480
000481 TGTAATTTAA ACAGAATGTT AAATTCAAAG TATTCAGAAA ACATTTTTGG ATGTATTAGG TAAATGCATC AGACCATGAG 000560
000561 GAGGTATCCT GGAAACACTA CTGACACCTC ATAAAGTGAA CTTCATATAT GTatatatga agggcagttt attatgtaaa 000640
000641 caatctcaca tgatcacaag atgaagtccc acaataggcc gtcagcaagc tgaggaagga ggaagccggt ccaagtccca 000720
000721 aaccctaaaa agtaggaaag ctgacagtgc agctttcagt ctgtggagga aggcctgaga gcccctggca aatcactggt 000800
000801 gtaagtccaa aagtccaaaa gctgaagaac ttggagtctg atgtttgagg tcaggaagca tacagcacag gagaaaaatg 000880
000881 aaggctggaa gactcagcaa gtctgctctt tccaacttct tctgcctcct ttattctagc tacattgaaa gctgattaga 000960
000961 tggtggccac ccagatggag ggcgggtctg cctctcccag tccacggact caaatgttaa tcttctttgg caacaccctc 001040
001041 acggacacac acacccagga acaatactat gcatccttta atcccatcaa gttgacgctc aatattaatc atcacaTCAC 001120
001121 TGTATTTTCT TCTATTAACG CAGTATATGC ACTTTTATGT ATGATTCTAT GCATGTAGGC TTCCTGGAAC AACCATTTGG 001200
001201 ATGAATTCAA TTGTCCAGTC AACATATAAT TAATTCTGCA AACAACTTAC TTGGCATTTT TACTATGGAA TGGTAAAAAA 001280
001281 AAAAAAAGTG ACCTAATTGC TTTGAAACTG CTGATTTTTG TGTATCCCTG TCATTGGAAT TACAGGTGCG GTATTCACAG 001360
001361 AAACTGTACC ATAGCATTGG AAAAACAGGG AAAGACAAGA TCATCTCTTC TTTATGTTTT GTTAACACTT GTCACCCTTA 001440
001441 AGATGTCTTT TGTTGTAGGA GCTTAACAAA TATATCTTTG TGATGGATGG AGGTAACCCA AGTGAGTACA AATAAATTAT 001520
001521 GACAGACAAG ATAACTTTTC TTACCTCCTC ATGCAATGGT AATATTTGTA GAATATGTTG TCAGTTTCCA AACAAAATAT 001600
001601 GTCAAAGAAT AAACTTCCAA TAAATATCCC CAGATATTCT AATCACGGCT TTAAATAGGT AACATGGTCT TTGTGGAAAT 001680
001681 AAGAGATCCA GTTGATGACA AAGCAACGAA TGAGACTGAA TGTCAACAAA GTTATATGAA AGGTATTTAT TCACCTGAGG 001760
001761 ACAGATTAGA AAGGTAGCAA ACACTTGGGA ATATTTTATC TTTGGAAAAA TAATGAAGTA TTTGATCATA AAGATCTGCT 001840
001841 AAAGTAAAAT AGAGCATATG CCTCATGACA TTTAATTAAT CATTAATTTC ATGCCTGTGT ATTGTGGGTT AAAAAGATGT 001920
001921 TTTCAATATG AATTGATCCA AAACAACTCT TTAAGTTAGT ATTATTAAAA TACATCATTT ATATAACAAA TTTTCACAGC 002000
002001 CAGAGAATGT GGAAGCATAA AATGCCAATG GTCACTGTAT CTCAATTCAT TTTCTGCCAA CTTATTTTCT CTCTGcaatg 002080
002081 gggaaaggat tccctattta ataaatggtg ctgggaaaac tgggtagcta tatggaga
[back to top]

Predicted Small Protein

Name NONHSAT138412_smProtein_959:1177
Length 73
Molecular weight 8028.2428
Aromaticity 0.0972222222222
Instability index 52.1736111111
Isoelectric point 6.21588134766
Runs 13
Runs residual 0.0396390916464
Runs probability 0.0455070455071
Amino acid sequence MVATQMEGGSASPSPRTQMLIFFGNTLTDTHTQEQYYASFNPIKLTLNINHHITVFSSIN
AVYALLCMILCM
Secondary structure LEEEELLLLLLLLLLLLEEEEEELLLLLLLLLHHHHEEELLLEEEEELLLLEEEEEHHHH
HHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH
HHHHHHHHHLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTT
TTTTTTTTTooo