NONHSAT138743
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138743 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3041 nt |
Genomic location |
chrX-:135998786..136079662 |
Exon number |
14 |
Exons |
135998786..135999041,136004767..136005239,136005653..136005728,136005751..136005802,136005810..136006076,136007406..136007538,136026375..136026806,136039392..136039564,136057615..136057678,136067205..136067229,136067436..136068038,136075645..136075821,136077059..136077154,136079448..136079662 |
Genome context |
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Sequence |
000001 GTAGAAACAT GCAGTTATCA TTTATTTCAA TTCTTTTCTA AACACAGACT TCCAATTCCA ATAATGCAAG TATAGCAAAT 000080
000081 GCATTAGTTT CTTATGGCTT TACCTCAGCA CATAAATGAA AATAATACAG CAAAACTGTA ACTTCTGAGC AAGTAATCAC 000160 000161 AAGAATTATA AAGACTAAGA AAAGGAAGCC AAACATGTAG TACAGCTAAT GAGACCAAAT ACTGTTCAGA ATGAAAAAGA 000240 000241 GTTGAATAAA AATACAGCCG AAGGGGAAAA TGCCACCAAT TATGATGCCA AGAAGTGGTT TTGTAAAGAA GGTATTTTAA 000320 000321 GAGTTTACCT TTTCTTTATT TCCAAAATAT GCACCAAAAA ATGTTAGTGG TACTAAAATT CTAAACCAAA TTGTAAGGAT 000400 000401 ATCTAGCAGA GTAGCAAAGG AGACGGCAGC TGATGACCCT TCCATCCAGA GAATTTTCAT CATAATAAAG AGATCAGCAA 000480 000481 AGACAATTTC CAGTTTTTAA ATGGGGATTT TAATAGACAT ACTTCCAAAG AAGACATGCA AATGGTCAAT AAGCACATGA 000560 000561 AAAGATGCTC AATATCATTA GTCATCAGGG AAATGCAAAT TAAAACTATA AAATAGGCGG TGCACCCTGG GATAGGGAGC 000640 000641 GATCTCCAAG CGAGGCGGCA AGATGGACTC AGGATTCTTC CACCGATCAA GTGCAGAACA GTATAATCGG TTCAGCAACA 000720 000721 AACAGAAGAA ACTACTGAAG CAGCTGAAAT TTGCAGAATG CCTAGAAAAA AAGGTGGACA CGAGCAAAGT AAATTTGGAA 000800 000801 GTTATAAAGC CTTGGATAAC AAAAAGAGTA ACAAAAATCC TTGGGTTTGA AGATGATGTT GTGATTGAGT TTATATTCAA 000880 000881 CCAGCTGTAA GTGAAGAATC CAGACTCCAA AATGATGCAA ATCAACCTGA ATGGATTTTC GAATGGAAAA AATGCTCGAG 000960 000961 AATTTACGGG AGAACTATGG CCCCTGCTGC TAAGTGCACA AGAAAACATC TCGGGAATCT CTTCTGCTTT CCTAGAACTG 001040 001041 AAGAAAGAAG AAATAAAACA AAGACAGATT GAATAAGAAA AATTGGCGTC TAAAAGAAGG AAAAAACTCC AGAGCTTTTT 001120 001121 TTTTTTTTAA ACTAAAGCTA TATAAAGCTT GTGGATTAAA CAGAATAAAT TTCTAAATTT TGGTCTTAAA TTCCTGGGTG 001200 001201 CAGCAATTTG TCTACCTTAG CCTCCCAAAG TGCTGGGATT ACAGGCACAA GTTATCACGC CCTGCCCATT TCTTATATTT 001280 001281 TACATTTTTT GTATGTTAAG TATTTTGGTG GTGACTGCCT GTTGTCCTAG ACACCCAGGA AGCTGAGGTG GGGAGAGGAG 001360 001361 TGATGCAGCT AGCAAATGCC TGGTCAGGGA TGTGGAGACT TACTACTCAA AATGTAAAGA GGAATAAAGG AAAAATAGGA 001440 001441 GAAAAATAAA AAGGAGAAAC AGTGATGCTT CCCTTTTGAT TTACTTACTC AGCATACAAT TTATCCCTTG GCTTCTGTGT 001520 001521 AATGAATAAT AGGTAATCTT TATGGAATTG TCTATACATG TGTATGCATA ATAAAACCAT TCACTCACAG TTGGGAAAAA 001600 001601 TTACTGATGT GCATCTCTTT CTATTCATTT TTGTAACCCT AGTGCCTGGT ACATAATATG CCCTTTTAAG TGTTTCTAGA 001680 001681 ATGAATAAAT TCTATTTAAA GCTGAAAAAC TTTTTATTTT ATTGTTTTAT TTTATTTTAA GACAGAGTCT CTTATTTTGA 001760 001761 GATGGAGTCT CACTCTTTCA CCCACTCTAC AAACTGGCAC TAAAGCAGGT TTGTCAGTAG AGGGCGCTGG AGAGACATCG 001840 001841 CAAGGGAAAG GGTTTATTTC CTGGTTGATC TTGGCTCACT CCACAGGCTT CTGTTTTCTT TCAGCATGCT GCAGCCCAAT 001920 001921 CGTTTAAGCC CAGGAGTTGG AGACCAGCCT GAACAACGTT GTAAGACCCC ACCTCTACAA AGTCCGTATC CTTTGACCCA 002000 002001 GCAAATAATT AGTAATTATC CTAAATAATT AAGACTACAT AGATGGCTGT ACAACAATAG CTGTCATTTA TTGAGTGCCT 002080 002081 ACTATGTATT AAACACTGCT CTAGCACTTT ACAAGTATTA TCCTATTTAT CCTTGTAACA ACCCTGTGTA TTACAGTACA 002160 002161 CACGATTCTT TTTTAGAGAC GGAGCTGTTG CCAGGCTAGA ATGCAGTGGC GCAATCTTGG CTCACTGCAA CTTTGGTGGG 002240 002241 ACTACAGGCA CGCACCACCA CGCCCAGCTA ATTTTTATAG TATACGCTAT GATTATTTCC ATTTTACAGA TGTAGATATA 002320 002321 AAATATGTAT TATATATATA TGAACATGGA AAGAAGTCCA TCATAAACTT CTCAGTAAAG ACATAAAAGA TCACATACAT 002400 002401 ACATATATAA AATCTCACAT GAAGTTATAC ACAGTATACA TAAAAAAAAT TTATTAAAAT TGGAGAGGAT TACGAGGAGA 002480 002481 CTCTTGGAAC TCTATACCAA ATAAAGAGTT TTGTAGGAGG TTTTCACAAG CCTATACTAC TTTTGTAATT GTAAAAACCA 002560 002561 TAATGTTTCA TAATAAGGAG GTGTGAGGTG GGGGTCTCAA AGATCCAGAG ACCTACCTGG ATCTCTGGCA TGGTAGTGTG 002640 002641 TCCAGAAATG GTGGGTTCTT GGTCTCACTG ACTTCAAGAA TGAAACCGCG GACCCTCGCG GTGACCGTTA CAGTTCTTAC 002720 002721 AGGCGGTGTG TCTGGAGTTT GTTTCTTCTA GACGTTCGGA TGTGTCCGGA GTTTTTTCCT TCTGGGAAGA GGAAATTCAC 002800 002801 AAGAAAGAGT ATCACTATAT AAAAGAAATA GCAAAAAGTA GCTGCTGGTT TTATTTAAGC TTTGTTGTTG TTTTTTTTTA 002880 002881 GACAGAGTCT CACTCTGTCG CCACGCCTGG ACTGCAGTGG CGCAGTCTGG GCTTACTGCA ACCTCCACCT CCTGGGTTCA 002960 002961 AGTGATTCCC GTGCCTCAGC CTCCCGAGTA GCTGGTACTA CAGGCATGCA CCACCACGCC CGGCTAATTT TTTTTTTTTT 003040 003041 T |
Predicted Small Protein
Name | NONHSAT138743_smProtein_662:889 |
Length | 76 |
Molecular weight | 8896.2554 |
Aromaticity | 0.12 |
Instability index | 40.1946666667 |
Isoelectric point | 9.37371826172 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0381798911211 |
Amino acid sequence | MDSGFFHRSSAEQYNRFSNKQKKLLKQLKFAECLEKKVDTSKVNLEVIKPWITKRVTKIL GFEDDVVIEFIFNQL |
Secondary structure | LLLLEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELHHHHHHHHHHH LLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |