NONHSAT138909
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138909 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2644 nt |
Genomic location |
chrX-:146990949..147003676 |
Exon number |
3 |
Exons |
146990949..146992513,146992896..146993746,147003449..147003676 |
Genome context |
|
Sequence |
000001 CAGTCATTCC ATTAGTTTAA TACTGAGTTG TTCAGAAACT TCTCAGTCAG TAACATGAAG ATCCATTCCT GAAAAGCACT 000080
000081 CAAACTGGAC TTGAATTTTT AAAAAATGAA GAATAGAATT AGCATAAAAT ATTAAAGAAC CTCATCATTA AAATTATATA 000160 000161 ACGAGACACT TACTTGTTTT CAAATGCAAC TGTTATTGAA TCTTCATGAA CATCCTTTAC AAATGCCTTG TAGAAAGCGC 000240 000241 CATTGGAGCC CCGCACTTCC ACCACCAGCT CCTCCATCTT CTCTTCAGCC CTGCTAGCGC CGGGAGCCCG CCCCCGAGAG 000320 000321 GTGGGCTGCG GGCGCTCGAG GCCCAGCCGC CGCCGCCGCC GCCGCCGCCG CCGCCTCCGC CGCCGCCGCC GCCGCCGCCG 000400 000401 CCGCCGCGCT GCCGCACGCC CCCTGGCAGC GGCGCCTCCG TCACCGCCGC CGCCCGCGCT CGCCGTCGGC CCGCCGCCCG 000480 000481 CTCAGAGGCG GCCCTCCACC GGAAGTGAAA CCGAAACGGA GCTGAGCGCC TGACTGAGGC CGAACCCCCG GCCCGCTGCG 000560 000561 GGTGTAAACA CTGAAACCAC GTCACGTGAT CAACGCTGTT CCCTCCCCCC GCGGGCTCAG CCCCTCGGCC CCGCCCTCTC 000640 000641 TCTTCAAGTG GCCTGGGAGC GCGCGCATGC GCGCTGCTGG GAACCGGCCG GGGTGCCGGG TCGAAAGACA GACGCGCGGG 000720 000721 CCGGGCGTGC GCGGGCTTGG TGGAGGGCGG GAAGGCTGAA GGGCGGTGAC AGGTCGCACT GCCTCGCGAG GGCCAGAACG 000800 000801 CCCATTTCTG CAGAGGTGCA CTCAGTGGCG TGGGAAATCA AATGCATCCG GTTATCCCAG TTCGGCCTCT CTGGGATTCC 000880 000881 GCGGGAGGGG GTGTCTGGTC TGGTTTGGTT TGGTTTGGTT TGGTTTGGTT TGGTCCGGTT CAAAGTAGCG CAGTCTGACT 000960 000961 GAGCGGGAGG TGGAGTGGAA GGCGAGAATA GGGGTGAAGG ATTAGACAGA AGAAGACTTT GAACTAGGAA CAGTGGCAAC 001040 001041 CAGGGTGACC CAGGCTTTTG TGACCCGTAG AGGCAGAAGC TGCCTTAATC CATGTTCCCT TCGGGATGCT GGTATCCAAC 001120 001121 TGAGAAGTTG ACGGAGCATC TATCGTGTGC CAGACACTGT GCTAAGTGCT AACGAGAAAT CGGTGAGCAA AACAGAAAAG 001200 001201 AAAAAAAAAG AAGAAACGAC TGCCAGCATT GAACTTAGTA CCTAGCAAAG TAGGTGGACA TAAATCAAAT TGTCAGACAA 001280 001281 GTAAATGAGT AGTTGCAGCT GTGATAAGGG GTATGAAGAA TAGGCGCTTC CATGATGGCG GAACATGACC TAGTCTGGGG 001360 001361 TGGAGAAGGG GAGATGATTC CAGCTGGAAT ATGGCAGGTG AGAGTTAACT AATAGCACTG AGTTGGCAGA GGCAGGATGA 001440 001441 CCTGCCCCAG GCAGGTGCCC CAGAATGAGA GGATGTTGCT GCTGGTGGAA CTCCAGCTTT AAAGCGGTGG ATCTAGGGCC 001520 001521 ACATTCCTCA AGGCCATAGC AAACAGGAAA GACCTTTTGG ACTAGGGTCT TTGGAGTAGT CACATGAGGC CAAGAACCCA 001600 001601 ATAGGGCTGA AAGAGAATCT CATCATAGGC TGAATGGGAG CAGAGCATTA GCTGCAACTC CAATGTATTA TAGTAAAAGG 001680 001681 GGACACATTG ATTAGAATGA TTATACCCCT CCAAGTGTAA GCTGTTGTTC AATTTACCCA GGGCTTAAAA ATATGTCAAC 001760 001761 TCTTCACAAC CATTTTTACT ACAAGCCACA CTCAACCTGT GTTGTTCCCT GAACCTGTGA TGCACTTTCA TCCGTTCATG 001840 001841 TCTCTACACA TCCTTCCTGG GCCCCATAGA GGCCCTGCAC CTTAAGGTTT TCAGCTGGAT TCCTATTAGC TAGTTATTTT 001920 001921 ATCTCAGGTA CAGAGAGTTA ACTTTGCTCC TCAATTTTCA GCACATTGTC ATATCAGTCC CTACAGGGTC CTTGTTTACA 002000 002001 TTATTTTATA GTGTTTATAT TATTTTTTCC TCATCTTTCT CGATCCCCAC TCTCATTCTT CTAGACACAA GCTGCAATAT 002080 002081 GTTCGATAGA GATCCTTGAT AATTTAACAC AGATAATGTT TTGTTTATGC CTCTTGCATT TACAGAGATG GTATTGGACT 002160 002161 GTAAATCTCT ATTTCCCACT GTTTTACTCA ACAGTCTGTT TTTGAGCTAT ACCCACATTG CTGTGTGTAC ACCTAGTTTG 002240 002241 CTACCGAGTA TGCCAGAAAT TTTATTCATA CATATCCCTA CTGATCGGGC ATCTAGGTTA CTGCCAACTC CCTGAAGTCA 002320 002321 TACTGTGGTG AAAACCCTTG TGAATGTCTT TACAAACCTT TGCCAGAACT TATTTTGTGC TCTTGTAGAA CTTTGTGCAT 002400 002401 ACCCTCTGCT TCCTCATTAC ACTGCTTGGC ATATAGCAGA GACTCAACAA ATGTTGAATA CCTCTACTAT GATGGTTAGT 002480 002481 GTACTAGAAT AATTTATTTA TATTTCTGTT TTCCTTATTG GATTATTAGT ACCTTCCAGA CAGGGCAAAT GTCTTTTCTA 002560 002561 TCTTTGTGTC CCTGGCACAT TAAAAGTGGT TGATTTCAAG GTATGTTCAA TGAATGAATA AATACTTATC TTCACTGCCA 002640 002641 GTAC |
Predicted Small Protein
Name | NONHSAT138909_smProtein_2126:2314 |
Length | 63 |
Molecular weight | 6914.2423 |
Aromaticity | 0.0806451612903 |
Instability index | 73.1467741935 |
Isoelectric point | 5.97674560547 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0867177337767 |
Amino acid sequence | MPLAFTEMVLDCKSLFPTVLLNSLFLSYTHIAVCTPSLLPSMPEILFIHIPTDRASRLLP TP |
Secondary structure | LLLHHHHHHHLLLLLLLHHHHHHHHLLLLEEEEELLLLLLLLLLEEEEELLLLLHHHLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii ii |