NONHSAT139160

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT139160

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1731 nt

Genomic location

chrX+:153626729..153629254

Exon number

2

Exons

153626729..153626883,153627679..153629254

Genome context

Sequence
000001 CGGTGTGGTG AGTAAGCGCA GTTGTCGTCT CTTGCGGTGC CGTTGCTGGT TCTCACACCT TTTAGGTCTG TTCTCGTCTT 000080
000081 CCGTTCCGAC TCTCTCTTTT TCGTTGCAGC CACTGAAGAT CCTGGTGTCG CCATGGGCCG CCGCCCCGCC CGTTGTTACC 000160
000161 GGTATTGTAA GAACAAGCCG TACCCAAAGT CTCGCTTCTG CCGAGGTGTC CCTGGTAAGT AGTGGAAGAG CCCCTGCACT 000240
000241 GGTTGGCTCT GCGGACTCCG CGTCCGTCTG TGACACCCCC TGCACACTTA CCCAATCCTT TTAGATGCCA AGATTCGCAT 000320
000321 TTTTGACCTG GGGCGGAAAA AGGCAAAAGT GGATGAGTTT CCGCTTTGTG GCCACATGGT GTCAGATGAA TATGAGCAGC 000400
000401 TGTCCTCTGA AGGTAAGGCA GGATTCTTTG TTCGTCACCC CCCAGTCCTT CCTCCGTGCT CCCTCAACCC CACCCACATA 000480
000481 CACTGCACTG GAATTGGGAG TTGATGAAAC ATGAGCCTTA CAAAACTCAG CCAACACAGT TCCCCTGAGC TGGAGATAGT 000560
000561 CGTGGTGAAT GTTTCTCTAT TATCTTCTCT CACTTTGCTG CTTTTCTTCT CCCTACCTAG CCCTGGAGGC TGCCCGAATT 000640
000641 TGTGCCAATA AGTACATGGT AAAAAGTTGT GGCAAAGATG GCTTCCATAT CCGGGTGCGG CTCCACCCCT TCCACGTCAT 000720
000721 CCGCATCAAC AAGATGTTGT CCTGTGCTGG GGCTGACAGG TGAGCTTGGT CTGGGCCTTT TAAGGCAGTT GGAGTCTCTA 000800
000801 CATTATTAGG CTTGCATTAT TTTATCAGAG CATAGAGGTG GCCCCAGTGA CTCAGCCACT ATGGCTACTA GAAAAGCCAG 000880
000881 GCTGGCAAGT GACTTTCAGT GGTCACTCAG GACCCCTTCC TGCAGATACA AACAAAGCAT GAGTAAGTCT TAGCAAGCTC 000960
000961 TTCCCCACAG GTTAGGGGAA ACACTGGTGA TGGGAGTAGC TCTTCTTGCT TTTAGCTGAA TGACAACCAT CTTGCCAGCA 001040
001041 GGTAGCTGAA GCTGGCAGAG GAGCCCAGTG GCGCCTTTTC AGTGGTTCTT GGGATGCTCC GCAGCCAATT AAGCCGACTG 001120
001121 AGTTCCTTTC CTCATGGGGA CCCAGTGTGC GATGGCTGCA CACAGCAGCT TCCTTGGTAG TGTACGCAGC CTGTTGGTTG 001200
001201 TATGGGTTGC TCTAAGGGAC CTTGGAGACA GGCCTTTCAG GTGGATGTTC ATGTTTCTGA CCTTGCACTA CCCCAATGTA 001280
001281 GGCTCCAAAC AGGCATGCGA GGTGCCTTTG GAAAGCCCCA GGGCACTGTG GCCAGGGTTC ACATTGGCCA AGTTATCATG 001360
001361 TCCATCCGCA CCAAGCTGCA GAACAAGGAG CATGTGATTG AGGCCCTGCG CAGGGCCAAG TTCAAGTTTC CTGGCCGCCA 001440
001441 GAAGGTATGT AGTGCTGCAG CCCCCTTCTC CCACCTTTGC CCCAGGCCTC CTGACTCAGT TCTTTCCATT GCTCCTTAGA 001520
001521 TCCACATCTC AAAGAAGTGG GGCTTCACCA AGTTCAATGC TGATGAATTT GAAGACATGG TGGCTGAAAA GCGGCTCATC 001600
001601 CCAGATGGCT GTGGGGTCAA GTACATCCCC AATCGTGGCC CTCTGGACAA GTGGCGGGCC CTGCACTCAT GAGGGCTTCC 001680
001681 AATGTGCTGC CCCCCTCTTA ATACTCACCA ATAAATTCTA CTTCCTGTCC A
[back to top]

Predicted Small Protein

Name NONHSAT139160_smProtein_1133:1396
Length 88
Molecular weight 9675.32
Aromaticity 0.103448275862
Instability index 74.0057471264
Isoelectric point 9.57440185547
Runs 11
Runs residual 0.0118226600985
Runs probability 0.0454706042941
Amino acid sequence MGTQCAMAAHSSFLGSVRSLLVVWVALRDLGDRPFRWMFMFLTLHYPNVGSKQACEVPLE
SPRALWPGFTLAKLSCPSAPSCRTRSM
Secondary structure LLHHHHHHHHHHHLHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHLLLLLLLLLEEELLLL
LLLLLLLLLEEEELLLLLLLLLLLLLL
PRMN -
PiMo -