NONHSAT139254

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT139254

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3187 nt

Genomic location

chrX+:155251353..155255331

Exon number

6

Exons

155251353..155251457,155251664..155251810,155251988..155252499,155252677..155252874,155252967..155254765,155254906..155255331

Genome context

Sequence
000001 CAGCAGGTAG AGCAGAGCCG GAGCCAGGTG CAGGCCATTG GAGAGAAGGT CTCCTTGGCC CAGGCCAAGA TTGAGAAGAT 000080
000081 CAAGGGCAGC AAGAAGGCCA TCAAGGTGTT CTCCAGTGCC AAGTACCCTG CTCCAGAGCG CCTGCAGGAA TATGGCTCCA 000160
000161 TCTTCACGGG CGCCCAGGAC CCTGGCCTGC AGAGACGCCC CCGCCACAGG ATCCAGAGCA AGCACCGCCC CCTGGACGAG 000240
000241 CGGGCCCTGC AGGAGAAGCT GAAGGACTTT CCTGTGTGCG TGAGCACCAA GCCGGAGCCC GAGGACGATG CAGAAGAGGG 000320
000321 ACTTGGGGGT CTTCCCAGCA ACATCAGCTC TGTCAGCTCC TTGCTGCTTT TCAACACCAC CGAGAACCTG TATGGCCAGA 000400
000401 AGGCAGGGCC GAGGGGTGTG GGCGGGAGGC CCGGCCTGGC TTAGTGGGGA CCCAGGGCAT CAGACACAGG TACAGCACAT 000480
000481 AGGCCAGGAG CCAGGGGGTG ACTGGGGTGG CTCGGCTCGG GAGGCCTGGG ACCCCACAGT GCACGCTGTG CCCCTGATGA 000560
000561 TGTGGGAGAG GAACATGGGC TCAGGACAGC GGGTGTCAGC TTGCCTGACC CCCATGTCGC CTCCGTAGGT ACAAGAAGTA 000640
000641 TGTCTTCCTG GACCCCCTGG CTGGTGCTGT AACAAAGACC CATGTGATGC TGGGGGCAGA GACAGAGGAG AAGCTGTTTG 000720
000721 ATGCCCCCTT GTCCATCAGC AAGAGAGAGC AGCTGGAACA GCAGGTCCCA GAGAACTACT TCTATGTGCC AGACCTGGGC 000800
000801 CAGGTGCCTG AGATTGATGT TCCATCCTAC CTGCCTGACC TGCCCAGCAT TGCCAACGAC CTCATGTACA GTGCCGACCT 000880
000881 GGGCCCCGGC ATTGCCCCCT CTGCCCCTGG CACCATTCCG GAACTGCCCA CCTTCCACAC TGAGGTAGCC GAGCCTCTCA 000960
000961 AGACCTACAA GATGGGGTac taacaccacc cccaccgccc ccaccaccac ccccaGCTCC TGAGGTGCTG GCCAGTGCAC 001040
001041 CCCCACTCCC ACCCTCAACC GCGGCCCCTG TAGGCCAAGG CGCCAGGCAG GACGACGGCA GCAGCAGCGC GTCTCCTTCA 001120
001121 GGTGGGAGCA GCTCTTTGAG GCCACCTGAT TTCTGGCGTG CTCAGTGCAC TCGGGTGGAT TTTCTGTGGG TTTGTTAAGT 001200
001201 GGTCAGAAAT TCTCAATTTT TTGAATAGTT TCCATTTCAA ATATCTTGTT CTACTTGGTC CATAAAATAG TGGCTTTCAA 001280
001281 ACTGTAGAGC TCTGGACTTC TCACTTCTAG GGCAGAGGGA ACCTGAACAA GTGAGGCTCT GGGTTCCCCA TTCCTAATTA 001360
001361 AACCAATGGA AAGAAGGGGT CTAATAACAA ACTACAGCAA CACATTTTTC ATTTCAGCTT CACTGCTGTA TCTCCCAGTG 001440
001441 TAACCCTAGC ATCCAGAAGT GGCACAAAAC CCCTCTGCTG GCTCATGTGT GCAACTGAGA CTGTCAGAGC ATGGCTAGCT 001520
001521 CAGGGGTCCA GCTCTGCAGG GTGGGGGCTA GAGAGGAAGC AGGGAGTATC TGCACACAGG ATGCCCGCGC TCAGGTGGTT 001600
001601 GCAGAAGTCA GTGCCCAGGC CCCCCCACAC AGTCTCCAAA GGTCCGGCCT CCCCAGCGCG GGGCTCCTCG TTTGAGGGGA 001680
001681 GGTGACTTCC CTCCCAGCAG GCTCTTGGAC ACAGTAAGCT TCCCCAGCCC TGCCTGAGCA GCCTTTCCTC CTTGCCCTGT 001760
001761 TCCCCACCTC CCGGCTCCAG TCCAGGGAGC TCCCAGGGAA GTGGTCGACC CCTCCGGTGG CTGGGCCACT CTGCTAGAGT 001840
001841 CCATCCGCCA AGCTGGGGGC ATCGGCAAGG CCAAGCTGCG CAGCATgaag gagcgaaagc tggagaagaa gaagcagaag 001920
001921 gagcaggagc aaggtgaGCG GGCCCTGGAG CCTGCGGTCG GAGGGCCTTG GGCAAGATCG CCTCCTCCCC TCCAGCCCTG 002000
002001 AGTCCACTGG GTGCTTTCTG CCCACCCCCT GCTCTTGCCA GCTGGCCCCT GCTTCCCCTA GGGCACATGC TGGAAGCCCT 002080
002081 GGGCCGCCAC CAGAAGTCCT CAGCCCTCCT GCCTGGGCTA TGGCTCCTTC CTGGTTTGGG AGCCATAGTG AAGCTTTCCT 002160
002161 CTCTAAGCTC ACCCAGCCCA AACTGTGACA GGAGAATCTT CTTCGACTGC CAAGAGCGGT CCAAGGCAAT GGTCAGCCAC 002240
002241 TGCAGCCCCC TGAGATATTT TTAGAGACTG GACCTGAGGC CTCTGGAGGC TACTGATGAT GCCTGCTGTG AACGCAGACA 002320
002321 CTGGTGTGAT GCGATGCCTG CGCCTGCAGC GGCAGTGCCC TGGGCACTAT GGTTTtgagc ttgtacccag cgctgctttt 002400
002401 gccttgctct gtgaccccag gcaagctgcc tcacctctct gggccagttt ccccatcgta cagtggTGCT GCACACCCTG 002480
002481 GCCCTGGCCC CGAGGTGGCT GGGAGGTGGC TCCTCAAACA GCCGCTTTCT CATCAGTGCC CGGTGCTGGG TCAGGGATCG 002560
002561 ACTGAGGCTC TGAGCTAACT AGGAAACACA GTGGCCTTGG AGGGCTGGGG AGTGTCATGG GGGTGGGGAC AGGGAGCCAC 002640
002641 CGGTCGCATG TGACTGAACT CTTCACCCCA GTCTGTGGCT TTCCCGTTGC AGTGAGAGCC ACGAGCCAAG GTGGGCACTT 002720
002721 GATGTCGGAT CTCTTCAACA AGCTGGTCAT GAGGCGCAAG GGCATCTCTG GGAAAGGACC TGGGGCTGGT GAGGGGCCCG 002800
002801 GAGGAGCCTT TGCCCGCGTG TCAGACTCCA TCCCTCCTGT GCCCCCACCG CAACAGCCAC AGGCAGAGGA GGACGAGGAC 002880
002881 GACTGGGAAT CCTAGGGGGC TCCATGACAC CTTCCCCCCC AGACCCAGAC TTGGGCTGTT GCTCTGACAT GGACACAGCC 002960
002961 AGGACAAGCT GCTCAGACCT GCTTCCCTGG GAGGGGGTGA CGGAACCAGC ACTGTGTGGA GACCAGCTTC AAGGAGCGGA 003040
003041 AGGCTGGCTT GAGGCCACAC AGCTGGGGCG GGGACTTCTG TCTGCCTGTG CTCCATGGGG GGACGGCTCC ACCCAGCCTG 003120
003121 CGCCACTGTG TTCTTAAGAG GCTTCCAGAG AAAACGGCAC ACCAATCAAT AAAGAACTGA GCAGAAA
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Predicted Small Protein

Name NONHSAT139254_smProtein_686:982
Length 99
Molecular weight 10797.0751
Aromaticity 0.0918367346939
Instability index 62.5603061224
Isoelectric point 4.09381103516
Runs 13
Runs residual 0.00638947167652
Runs probability 0.0448140448141
Amino acid sequence MLGAETEEKLFDAPLSISKREQLEQQVPENYFYVPDLGQVPEIDVPSYLPDLPSIANDLM
YSADLGPGIAPSAPGTIPELPTFHTEVAEPLKTYKMGY
Secondary structure LLLLHHHHHHLLLLLLLLHHHHHHHLLLLLLEEELLLLLLLLLLLLLLLLLLHHHHHHHH
HHLLLLLLLLLLLLLLLLLLLLLLHHHHLHHHHLLLLL
PRMN -
PiMo -