NONHSAT139254
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139254 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3187 nt |
Genomic location |
chrX+:155251353..155255331 |
Exon number |
6 |
Exons |
155251353..155251457,155251664..155251810,155251988..155252499,155252677..155252874,155252967..155254765,155254906..155255331 |
Genome context |
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Sequence |
000001 CAGCAGGTAG AGCAGAGCCG GAGCCAGGTG CAGGCCATTG GAGAGAAGGT CTCCTTGGCC CAGGCCAAGA TTGAGAAGAT 000080
000081 CAAGGGCAGC AAGAAGGCCA TCAAGGTGTT CTCCAGTGCC AAGTACCCTG CTCCAGAGCG CCTGCAGGAA TATGGCTCCA 000160 000161 TCTTCACGGG CGCCCAGGAC CCTGGCCTGC AGAGACGCCC CCGCCACAGG ATCCAGAGCA AGCACCGCCC CCTGGACGAG 000240 000241 CGGGCCCTGC AGGAGAAGCT GAAGGACTTT CCTGTGTGCG TGAGCACCAA GCCGGAGCCC GAGGACGATG CAGAAGAGGG 000320 000321 ACTTGGGGGT CTTCCCAGCA ACATCAGCTC TGTCAGCTCC TTGCTGCTTT TCAACACCAC CGAGAACCTG TATGGCCAGA 000400 000401 AGGCAGGGCC GAGGGGTGTG GGCGGGAGGC CCGGCCTGGC TTAGTGGGGA CCCAGGGCAT CAGACACAGG TACAGCACAT 000480 000481 AGGCCAGGAG CCAGGGGGTG ACTGGGGTGG CTCGGCTCGG GAGGCCTGGG ACCCCACAGT GCACGCTGTG CCCCTGATGA 000560 000561 TGTGGGAGAG GAACATGGGC TCAGGACAGC GGGTGTCAGC TTGCCTGACC CCCATGTCGC CTCCGTAGGT ACAAGAAGTA 000640 000641 TGTCTTCCTG GACCCCCTGG CTGGTGCTGT AACAAAGACC CATGTGATGC TGGGGGCAGA GACAGAGGAG AAGCTGTTTG 000720 000721 ATGCCCCCTT GTCCATCAGC AAGAGAGAGC AGCTGGAACA GCAGGTCCCA GAGAACTACT TCTATGTGCC AGACCTGGGC 000800 000801 CAGGTGCCTG AGATTGATGT TCCATCCTAC CTGCCTGACC TGCCCAGCAT TGCCAACGAC CTCATGTACA GTGCCGACCT 000880 000881 GGGCCCCGGC ATTGCCCCCT CTGCCCCTGG CACCATTCCG GAACTGCCCA CCTTCCACAC TGAGGTAGCC GAGCCTCTCA 000960 000961 AGACCTACAA GATGGGGTac taacaccacc cccaccgccc ccaccaccac ccccaGCTCC TGAGGTGCTG GCCAGTGCAC 001040 001041 CCCCACTCCC ACCCTCAACC GCGGCCCCTG TAGGCCAAGG CGCCAGGCAG GACGACGGCA GCAGCAGCGC GTCTCCTTCA 001120 001121 GGTGGGAGCA GCTCTTTGAG GCCACCTGAT TTCTGGCGTG CTCAGTGCAC TCGGGTGGAT TTTCTGTGGG TTTGTTAAGT 001200 001201 GGTCAGAAAT TCTCAATTTT TTGAATAGTT TCCATTTCAA ATATCTTGTT CTACTTGGTC CATAAAATAG TGGCTTTCAA 001280 001281 ACTGTAGAGC TCTGGACTTC TCACTTCTAG GGCAGAGGGA ACCTGAACAA GTGAGGCTCT GGGTTCCCCA TTCCTAATTA 001360 001361 AACCAATGGA AAGAAGGGGT CTAATAACAA ACTACAGCAA CACATTTTTC ATTTCAGCTT CACTGCTGTA TCTCCCAGTG 001440 001441 TAACCCTAGC ATCCAGAAGT GGCACAAAAC CCCTCTGCTG GCTCATGTGT GCAACTGAGA CTGTCAGAGC ATGGCTAGCT 001520 001521 CAGGGGTCCA GCTCTGCAGG GTGGGGGCTA GAGAGGAAGC AGGGAGTATC TGCACACAGG ATGCCCGCGC TCAGGTGGTT 001600 001601 GCAGAAGTCA GTGCCCAGGC CCCCCCACAC AGTCTCCAAA GGTCCGGCCT CCCCAGCGCG GGGCTCCTCG TTTGAGGGGA 001680 001681 GGTGACTTCC CTCCCAGCAG GCTCTTGGAC ACAGTAAGCT TCCCCAGCCC TGCCTGAGCA GCCTTTCCTC CTTGCCCTGT 001760 001761 TCCCCACCTC CCGGCTCCAG TCCAGGGAGC TCCCAGGGAA GTGGTCGACC CCTCCGGTGG CTGGGCCACT CTGCTAGAGT 001840 001841 CCATCCGCCA AGCTGGGGGC ATCGGCAAGG CCAAGCTGCG CAGCATgaag gagcgaaagc tggagaagaa gaagcagaag 001920 001921 gagcaggagc aaggtgaGCG GGCCCTGGAG CCTGCGGTCG GAGGGCCTTG GGCAAGATCG CCTCCTCCCC TCCAGCCCTG 002000 002001 AGTCCACTGG GTGCTTTCTG CCCACCCCCT GCTCTTGCCA GCTGGCCCCT GCTTCCCCTA GGGCACATGC TGGAAGCCCT 002080 002081 GGGCCGCCAC CAGAAGTCCT CAGCCCTCCT GCCTGGGCTA TGGCTCCTTC CTGGTTTGGG AGCCATAGTG AAGCTTTCCT 002160 002161 CTCTAAGCTC ACCCAGCCCA AACTGTGACA GGAGAATCTT CTTCGACTGC CAAGAGCGGT CCAAGGCAAT GGTCAGCCAC 002240 002241 TGCAGCCCCC TGAGATATTT TTAGAGACTG GACCTGAGGC CTCTGGAGGC TACTGATGAT GCCTGCTGTG AACGCAGACA 002320 002321 CTGGTGTGAT GCGATGCCTG CGCCTGCAGC GGCAGTGCCC TGGGCACTAT GGTTTtgagc ttgtacccag cgctgctttt 002400 002401 gccttgctct gtgaccccag gcaagctgcc tcacctctct gggccagttt ccccatcgta cagtggTGCT GCACACCCTG 002480 002481 GCCCTGGCCC CGAGGTGGCT GGGAGGTGGC TCCTCAAACA GCCGCTTTCT CATCAGTGCC CGGTGCTGGG TCAGGGATCG 002560 002561 ACTGAGGCTC TGAGCTAACT AGGAAACACA GTGGCCTTGG AGGGCTGGGG AGTGTCATGG GGGTGGGGAC AGGGAGCCAC 002640 002641 CGGTCGCATG TGACTGAACT CTTCACCCCA GTCTGTGGCT TTCCCGTTGC AGTGAGAGCC ACGAGCCAAG GTGGGCACTT 002720 002721 GATGTCGGAT CTCTTCAACA AGCTGGTCAT GAGGCGCAAG GGCATCTCTG GGAAAGGACC TGGGGCTGGT GAGGGGCCCG 002800 002801 GAGGAGCCTT TGCCCGCGTG TCAGACTCCA TCCCTCCTGT GCCCCCACCG CAACAGCCAC AGGCAGAGGA GGACGAGGAC 002880 002881 GACTGGGAAT CCTAGGGGGC TCCATGACAC CTTCCCCCCC AGACCCAGAC TTGGGCTGTT GCTCTGACAT GGACACAGCC 002960 002961 AGGACAAGCT GCTCAGACCT GCTTCCCTGG GAGGGGGTGA CGGAACCAGC ACTGTGTGGA GACCAGCTTC AAGGAGCGGA 003040 003041 AGGCTGGCTT GAGGCCACAC AGCTGGGGCG GGGACTTCTG TCTGCCTGTG CTCCATGGGG GGACGGCTCC ACCCAGCCTG 003120 003121 CGCCACTGTG TTCTTAAGAG GCTTCCAGAG AAAACGGCAC ACCAATCAAT AAAGAACTGA GCAGAAA |
Predicted Small Protein
Name | NONHSAT139254_smProtein_686:982 |
Length | 99 |
Molecular weight | 10797.0751 |
Aromaticity | 0.0918367346939 |
Instability index | 62.5603061224 |
Isoelectric point | 4.09381103516 |
Runs | 13 |
Runs residual | 0.00638947167652 |
Runs probability | 0.0448140448141 |
Amino acid sequence | MLGAETEEKLFDAPLSISKREQLEQQVPENYFYVPDLGQVPEIDVPSYLPDLPSIANDLM YSADLGPGIAPSAPGTIPELPTFHTEVAEPLKTYKMGY |
Secondary structure | LLLLHHHHHHLLLLLLLLHHHHHHHLLLLLLEEELLLLLLLLLLLLLLLLLLHHHHHHHH HHLLLLLLLLLLLLLLLLLLLLLLHHHHLHHHHLLLLL |
PRMN | - |
PiMo | - |