NONHSAT139351
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139351 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2110 nt |
Genomic location |
chrY+:6786723..6788832 |
Exon number |
1 |
Exons |
6786723..6788832 |
Genome context |
|
Sequence |
000001 GTGCTAAGAT TACAGTTGTG AGCAACTATA CTCCACTAAA GCAGATAGAA TTATAATGCT TGGAGCCCAA TATGCTTATA 000080
000081 TTTTCCTATT TTCTGAGTTT GGATTTGGGT CTGGAAAGGT ATCTTTATCA GTTAGGATGT CTAGTAACTT GCTTGCTTTT 000160 000161 TTTTCCTGTT ACCTTTTCTC CCTTAAATAT TTTTTTTTTT TTTTTGAGAC AGAGTCTCGC TCTGTCTCTT GTGGGTCTCA 000240 000241 GGCTGGATTG CAGTTGCGCA ATCATGATCT CGGCTGACTG CAACCTTTAC CTTCTGGATT CAATCAATTC TCCTGCCTCA 000320 000321 GCTTCCTGAG TAGATGGGAC TACAGGCGGG CACCACCATG CCCGGCTAAT TTTTGTATTT TTAGAAGAGA CGGGGTTTCA 000400 000401 CCGTGTTGGT CAGGCTGGTC TCAAACTGCT GATCTCATGA TCCACTTGCC TCGGCTTCCC AAAGTGCTGG GATCACAGGC 000480 000481 ATGAGCCACC ACGCCCGGCT TTCCCTCTTA AATTTTAGGA CTATAACTGT ATACTTTTAT TTTTTAAATT ACCATATAGT 000560 000561 AAAATTGGCT CTTTGGTTGT GTAGCTTTAT GTGTTTTGAT GTGTGTATAG ATGGATGTCA TAATCAGGAG AGAGAACATT 000640 000641 CCCCTAAGCC CAGAGATGTC CATGGTGCTA TCCTCCACAG CATGTTTCTC GGCAGTCACT CTGCCCCCAG CCCCAAACAT 000720 000721 GGGGCACCTG CCTGTAGGTG CCACAGAAGG CAACATCATG GCCTGTTAAA TACAGTAAGA CATTCTTCTT CAAAGGGTTA 000800 000801 ACTTGTTGAA CTCTCCTTGT CCTTTGTTCC CTGCTTTCAA GGCCAGACTC CCTTACTCTC TGTGTTCCTT TGCCCTGGGA 000880 000881 AACAACCTTC CTCTTGGTCT TTATCTATAG AGTCCACATT CCACATCTGC TCCTCACTCT GTAAATCATC CCTCCGGTCG 000960 000961 AAACACTCTC TGTCTCCACT AAAACTGTTT TCTCACTATT GTAACCACAT CCCTGCACTT CTCAAATTAG CCAATTGGGT 001040 001041 TCAGCTTAGA TTGTGCAGTC CAACTCTAGC CAACAGATAC TGGACATGGC AGTAGGAGCC CAATGAATTA AAGATAAAGT 001120 001121 GACTGCTTTC CTTTGTTCAG AGTGCTTTCA TGGTGACCAA ACTAATGAGC AGCACCCTTC TGCAGAGGTA AACTTTGCCT 001200 001201 TGCTGAGAAA CCAATTGTTG GCGTGTTTAT TTCATTTATG ACTTTGAGCT TTATTTCTAA CATGGCCCAA AGTAATCCTC 001280 001281 TTTTCTTGAA CACATGGTAG AATGCCCTAG GTGAATCCCT CCAGTCTTCC AGTACCATCC TTGACTCCTC TCTCTGATGA 001360 001361 CACATGAACT TTATGCTTTT GCACACTTCA GGCAACACCA AAAGAAAGGA AAAGAACAGC TTAGCTTCTT AATGTGTGTA 001440 001441 AGAAACCACA GTGAAAAAAA AATCAGGTGT GTTGTTGAGG CTGCTAAAAG CTTTCCTTTT TTTTCTGTGC CAGTTCTCGC 001520 001521 TGCCTCATTG GTTGAGATGG GATGTCCTTT TTGATGTCCT CTTTAGAGAG TGTTATCCTC ACCTTTTTGC ATAGTCCTAC 001600 001601 CAAAAGACAC CTCACATGCA AAGTGTAACA GAAAATTACA GTCATGACTT TAGTTTTAAA AACAGGACGT ATATTCATGA 001680 001681 AGAATGTTTG CTGTTTTCCC AGTGGGTTAA TCATATGAAT ATAAAACAGA CTAAAAGTAT CAAGTTGTTT TTGCATTTAT 001760 001761 TTATTGTAGA AATAAAATGG ATTGCTACCT CTGAGCTTCT GAGAAGCTGT TAACCTGTGT TTTACTTTGG GTCATAATGT 001840 001841 CGCTTTCTGT GATCTCATAT GAAGTGACGT TTTCTAGAAT AATCCTTATT CTGGTATTTC GGGGTCTTTT ATTCTGCCTG 001920 001921 AAGTGGTTGT GTGAAGTCAC AGAATATGTG CATGTCCTCC TATGTAGAGT TAAAGGGCTG AAAGAGTGGC CTCAAGCCTT 002000 002001 CCCCTCCCTC CCAGGTGTGA AAATTTGGAT TTCAAGGTCT GGGAGGCCAT GTTTTTTTCA GACCGGTTAA GGATGATCAT 002080 002081 TTTATGTTAA ATAAACATTG GGATAAACTT |
Predicted Small Protein
Name | NONHSAT139351_smProtein_71:328 |
Length | 86 |
Molecular weight | 9534.2458 |
Aromaticity | 0.152941176471 |
Instability index | 51.3576470588 |
Isoelectric point | 4.35943603516 |
Runs | 14 |
Runs residual | 0.0281639928699 |
Runs probability | 0.0739584121937 |
Amino acid sequence | MLIFSYFLSLDLGLERYLYQLGCLVTCLLFFPVTFSPLNIFFFFLRQSLALSLVGLRLDC SCAIMISADCNLYLLDSINSPASAS |
Secondary structure | LEEHHHHHHLLLLHHHHHHHHLHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL LLEEEEELLLLHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTTT TTTTTTTTTTTTiiiiiiiiiiiii |