NONHSAT139469

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT139469

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1476 nt

Genomic location

chrY-:13901758..13903233

Exon number

1

Exons

13901758..13903233

Genome context

Sequence
000001 AGGACCAAGT ACTGCAGCAG CAGCAGCAGC ATCAAACAGT TGCATGAGAA GGAAAGCTTG GAACTTGAGG TGCTCCCTGC 000080
000081 AGAGGCAAGC ACCCAGCATG GCAGACCAGG TGGCCAACAA GGTGGGAGGT GTGGCTGTCG TCATCACGGA GCCAAACACA 000160
000161 CCAAGGAGTG CAGCAAAGAT GAAGGTTCTA AGTGCAAATG GCAGCCTTGA TTTTTAGAGC AACTGGCTGG GGCTTGATTG 000240
000241 GTTAAATAAG TACTTACATA ACAGGATGCT TACCATGATC CCCAGTCAGA ATTTGTAGGT GCCCCATAGA AGTGGATGCC 000320
000321 TGCTGGGAGT CCAGGTGCAG GCAGTGGTTT TGGGTACATA TGCTTCCTAC AGTCCACTTA TCACCACAGA AGGGAATCTG 000400
000401 TGGAGTTGGA GTTGAAATGA AAAGGGGCAG CTGAAACATG GTGACACCAA GAAAGCTGAA GCACCCAAAC TGATAAAGGG 000480
000481 TCCCAGTCCT GGGGTTACTG TGTCAGCAGC CTATGGGTGG AGCCACAACC CAGTGTTGCT GGAAGTGGGC ACTGCATTTG 000560
000561 CCTTTGGAAA GAACAAGATG CAGAAGGTGG GGCTTGGTCG TCAGACAGAT GCAGTTCCTA GCCCTGCGCA GAAGGTATAC 000640
000641 AAGGCCAGCC ATTCACCAAA ATGGTCCATG GGACTGAATT CAGTGGGATG ATGGACTGca aaaaccaaaa ctaaaaccaa 000720
000721 aacaaaaaac aaaaaacaaa aacccaaacT TTATTCCTTT GGGAGCCCTG AATATGGTCA CCTGGTATAC AACTCATGAT 000800
000801 GAGAAGTTCA TGTCCCCACT GCTGTGGATA GAGTCCAGCT GGGAGCTGAT GCCCAGGCAA GTGGCTGTCT TCATGGAGAA 000880
000881 GGAAGAAAGA TTAGCAGATT TTGCCAGTAC CACACGTGGT TGTGCAGATG TGGCCTGTAG AGCTAACCAC ATGCTGGTCC 000960
000961 TGGACTCCCA GAAGCACATC TTCTTCTGAC ACGGGGTGGC TATTGCTGGC TGGACCATGT GGAGCAGAAA AACGAGATGG 001040
001041 TCCACCTCCC ACAAGCGGTT TGGCTTTCCT GGAATGGGGT CCCCAGATCT ATGCTGGTTA TGCCTGGTCC TTTGCTGTCA 001120
001121 GTGAAGAGGG TGACGTGTTT TTCTGGGAGG CCACCAACAC TTCCCATGAG TCTATCATGT ACCTGAAAGC AGTGCTGAAC 001200
001201 ATCCGTGGCT GGAGAATGTG GAGCCTGGCT CATGGGAAGA GCATCATGGT GGCTGCAGAT CATCTGGGGC CAGTCCCTGA 001280
001281 TCTTTGGTGA ACTGGGCAGA GGGGACTCAC AAGCCCACAT CTCCCACTGC GGTCCAAGAC ATGAAGACGC TGCATGGTGT 001360
001361 CTTCTCAGAG CAGGCTGCCA TGGGTTACTC CCGCTCCTTG GTGATGGTGA GAGATGAAAG TGATACCCAG AAACTGCCAG 001440
001441 AGTACAAACC CCTACCCTCT AATTCTCCCA GAAACT
[back to top]

Predicted Small Protein

Name NONHSAT139469_smProtein_773:988
Length 72
Molecular weight 8383.5961
Aromaticity 0.12676056338
Instability index 57.2
Isoelectric point 5.44976806641
Runs 11
Runs residual 0.00637509266123
Runs probability 0.0439450145333
Amino acid sequence MVTWYTTHDEKFMSPLLWIESSWELMPRQVAVFMEKEERLADFASTTRGCADVACRANHM
LVLDSQKHIFF
Secondary structure LEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHLLLE
EEELLLLLEEL
PRMN -
PiMo -