NONHSAT139476

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT139476

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1215 nt

Genomic location

chrY+:14474827..14499123

Exon number

8

Exons

14474827..14474869,14482956..14483105,14486671..14486792,14487928..14488049,14494139..14494272,14494944..14495106,14496112..14496233,14498765..14499123

Genome context

Sequence
000001 ATGCGATCAG CCAGCTTGAG TGGACGCACC CGCCCGCCGC CAGGGAATCT TTGCCGGTGC TACTGTTTTT ATGCTTGCTT 000080
000081 CTGAAGACGT GTGAACCTAA AACTGCAAAT GCCTTTAAAC CAAATATCCT ACTGATCATG GCGGATGATC TAGGCATTGG 000160
000161 GGATCTCGGT TGCTATGGGA ACAATACACT GAGAATGCCA AATATTGACC AGCTTGCAGA GGAAGGTGTG AGGCTCACTC 000240
000241 AGCACCTGGC GGCCACCCTG CTCTGCACCC CAAGCCGAGC TGCATTCCTC ATGGGGAGAC ATTCTTTCAG GTCAGGCATG 000320
000321 GACGCCAGCA ATGGATACTG GGCCCTTCAG TGGAATGCAG GCTCAGGTGG CTCCCTGAGA ACGAAACCAC TTTTGCAAGA 000400
000401 ATCTTGCAGC ACCGCGACTA TGCAACTGGC CTCATAAGTA AGATTCTTAA TGCCATCGAA GACAATGATT TAAGAAACTC 000480
000481 AACATTCACG TATTTCACCT CTGACCATGG AGGACATTTA GAGGCAAGAG ATGGACACAG GAGTTAGGGG GATGGAACAG 000560
000561 AATTTACAAA GGTGGGAAGG GCATAGGAGG ATGGGAAGAT GGGATCCATG TGCCCGGGAT TTTCCACTGG CCCAGGGTGC 000640
000641 TCCTGGCTGG CTGAGTGATT GGAGAGCCCA CGAGCCTGAT GGACGTGTTC CCTCCTGTGG TCCAGCTGGC AGGCGGCAAG 000720
000721 GTGCCCCAGG ACAGGGTGAT CGACAACCGC AGCTTGGTGC CCTTGCTGCA GGGAGCTGAG GCATGCTTAG CACATGAGTT 000800
000801 CCTGTTTCAT TACTGTGGGT AGCATCTCCA CACAGCACAC TGGCAACTGA AGGACAGTGG AAGCATCTGG AAGGTTCATT 000880
000881 ACGTGATCCC ACAGTTCCAC CCCATGGGAG CAGGGGCCTG CTACAGCTGA GGCATCTGCC CATGCTCCAG GGAGGGCATG 000960
000961 ACCCATCACA GACCCCCTTT GCTCTTTGAC CTCTCCACGG ACCACTCTGA GGCACAGCCC CTGACCCCTG ACTCCAAGCA 001040
001041 CCTGTACCAC GCCATGATAG CAAGGGTAGG TGCCGCAGTG TCGAAGCATT GGCAGACCCT GAGTCCTGTG CCCCAGCAGT 001120
001121 TTTCCACAAG CAACATCTTG TGGAAGCTGT GGCTGCAGCC GTGCTGCAGA CATTTCCCGT TCTGCTCATG CCCAAGGATG 001200
001201 GGGATGGCAC CCCGA
[back to top]

Predicted Small Protein

Name NONHSAT139476_smProtein_137:436
Length 100
Molecular weight 10591.8833
Aromaticity 0.0606060606061
Instability index 45.5222222222
Isoelectric point 6.01446533203
Runs 14
Runs residual 0.00772430184195
Runs probability 0.0419284831049
Amino acid sequence MADDLGIGDLGCYGNNTLRMPNIDQLAEEGVRLTQHLAATLLCTPSRAAFLMGRHSFRSG
MDASNGYWALQWNAGSGGSLRTKPLLQESCSTATMQLAS
Secondary structure LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLHHHHHHHHHHLLLHHHHHHHHLLLLLLLL
LLLLHHHHHHHHHLLLLLLEELLLHHHHHHHHHHHEELL
PRMN -
PiMo -