NONHSAT139476
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139476 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1215 nt |
Genomic location |
chrY+:14474827..14499123 |
Exon number |
8 |
Exons |
14474827..14474869,14482956..14483105,14486671..14486792,14487928..14488049,14494139..14494272,14494944..14495106,14496112..14496233,14498765..14499123 |
Genome context |
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Sequence |
000001 ATGCGATCAG CCAGCTTGAG TGGACGCACC CGCCCGCCGC CAGGGAATCT TTGCCGGTGC TACTGTTTTT ATGCTTGCTT 000080
000081 CTGAAGACGT GTGAACCTAA AACTGCAAAT GCCTTTAAAC CAAATATCCT ACTGATCATG GCGGATGATC TAGGCATTGG 000160 000161 GGATCTCGGT TGCTATGGGA ACAATACACT GAGAATGCCA AATATTGACC AGCTTGCAGA GGAAGGTGTG AGGCTCACTC 000240 000241 AGCACCTGGC GGCCACCCTG CTCTGCACCC CAAGCCGAGC TGCATTCCTC ATGGGGAGAC ATTCTTTCAG GTCAGGCATG 000320 000321 GACGCCAGCA ATGGATACTG GGCCCTTCAG TGGAATGCAG GCTCAGGTGG CTCCCTGAGA ACGAAACCAC TTTTGCAAGA 000400 000401 ATCTTGCAGC ACCGCGACTA TGCAACTGGC CTCATAAGTA AGATTCTTAA TGCCATCGAA GACAATGATT TAAGAAACTC 000480 000481 AACATTCACG TATTTCACCT CTGACCATGG AGGACATTTA GAGGCAAGAG ATGGACACAG GAGTTAGGGG GATGGAACAG 000560 000561 AATTTACAAA GGTGGGAAGG GCATAGGAGG ATGGGAAGAT GGGATCCATG TGCCCGGGAT TTTCCACTGG CCCAGGGTGC 000640 000641 TCCTGGCTGG CTGAGTGATT GGAGAGCCCA CGAGCCTGAT GGACGTGTTC CCTCCTGTGG TCCAGCTGGC AGGCGGCAAG 000720 000721 GTGCCCCAGG ACAGGGTGAT CGACAACCGC AGCTTGGTGC CCTTGCTGCA GGGAGCTGAG GCATGCTTAG CACATGAGTT 000800 000801 CCTGTTTCAT TACTGTGGGT AGCATCTCCA CACAGCACAC TGGCAACTGA AGGACAGTGG AAGCATCTGG AAGGTTCATT 000880 000881 ACGTGATCCC ACAGTTCCAC CCCATGGGAG CAGGGGCCTG CTACAGCTGA GGCATCTGCC CATGCTCCAG GGAGGGCATG 000960 000961 ACCCATCACA GACCCCCTTT GCTCTTTGAC CTCTCCACGG ACCACTCTGA GGCACAGCCC CTGACCCCTG ACTCCAAGCA 001040 001041 CCTGTACCAC GCCATGATAG CAAGGGTAGG TGCCGCAGTG TCGAAGCATT GGCAGACCCT GAGTCCTGTG CCCCAGCAGT 001120 001121 TTTCCACAAG CAACATCTTG TGGAAGCTGT GGCTGCAGCC GTGCTGCAGA CATTTCCCGT TCTGCTCATG CCCAAGGATG 001200 001201 GGGATGGCAC CCCGA |
Predicted Small Protein
Name | NONHSAT139476_smProtein_137:436 |
Length | 100 |
Molecular weight | 10591.8833 |
Aromaticity | 0.0606060606061 |
Instability index | 45.5222222222 |
Isoelectric point | 6.01446533203 |
Runs | 14 |
Runs residual | 0.00772430184195 |
Runs probability | 0.0419284831049 |
Amino acid sequence | MADDLGIGDLGCYGNNTLRMPNIDQLAEEGVRLTQHLAATLLCTPSRAAFLMGRHSFRSG MDASNGYWALQWNAGSGGSLRTKPLLQESCSTATMQLAS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLHHHHHHHHHHLLLHHHHHHHHLLLLLLLL LLLLHHHHHHHHHLLLLLLEELLLHHHHHHHHHHHEELL |
PRMN | - |
PiMo | - |