NONHSAT139809
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139809 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2337 nt |
Genomic location |
chrY-:28740998..28780799 |
Exon number |
13 |
Exons |
28740998..28741192,28747038..28747169,28757860..28757954,28760301..28761109,28761441..28761678,28767920..28768042,28768659..28768755,28769733..28769813,28774090..28774169,28774418..28774584,28776794..28776896,28779492..28779578,28780670..28780799 |
Genome context |
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Sequence |
000001 GTCATTGTAT TTCAGACATA CACAAATAAA AGTCATGTGC CCATTGAGGC AAAATATATC TTTCCTTTGG ATGACAAGGC 000080
000081 CGCTGTGTGT TGCTTTGAAG GTCATCAGTG GGAAGTACAT AGTTGGAGAG ATTAAAGAGA AGGAAGAAGC CCAGTCAGAG 000160 000161 TACCGAGGAG CAGTGACCCA GGGCCATGGC GCTTACCTGA TGAGTCAGGA TGCTCCATTC TACAGCAAAT CGTCACATCC 000240 000241 TAAGGATTTT TTCCCAGTGT AGTGCCGGAG TATTTGAATA TTTTAATGCA AAATCCAAAC ATAGTTGGAG AAAAGAGATA 000320 000321 AAGACCAAAT GACCAGGTTA TGTTCTCCGA ATTGCCACTC TGTCTCCGTC AAATGGTAGC AACTCAACAC AGATGTGCCC 000400 000401 GCGGCCCTGC AGGCCCCAGC CCAGGTGCCG TCGTTGTTTC ACAATGATTG ACTCCTTGTC TATGGATTCA TTCCTCACTG 000480 000481 CACACAGGCA ACTCTGTGTG CACTAATTTG AGAAAGAATT TTTGTACAAT AGTGTCGACT ATTGAGCTTC AGAAGACAAC 000560 000561 TGGAACTATG ATTGACAAGC TGGCAACCCG AGCTCTAATC AGAGATTACA AAGATGGCAT TCTTCATGAA AATGAAACCA 000640 000641 GTCGTGAGGA TGAAGAAACA AACCTTGAAA TCTCTGATTA TTAAACCCAG TAAAGAAAAC TCTCTCATAA TACAATTTAC 000720 000721 AAGCTTTGTG GCAGTTGAGA AAAGGGATGA GAATGAGTCA CCTTTTCCTG ATATTCCAAA AGTTTCTGAA CTTATTACCA 000800 000801 AAGAAGATGT AGACTTCCTG CCCTACATGA GCTGGCAGGG GGAGCACCAA GGAGCCATCA GGAACCAACC TCTTTTAGTG 000880 000881 TCCTCTGAGT GGCAAGAATT ACCTTCATCC AAACCAAAAC TTAGGGCTAA AAGAAAAATG AAATTATCTA AGACAGAAAT 000960 000961 TTCTGAAGAT TTTGAAGAGG ATGGCTTAGG TGTACTACCA GCTTTCACAT CAACTTTGGA ACGTGGAGGT GTGGAAAAGC 001040 001041 TATTGGATTT AAATTGGACA GAGTCATGTA AACCAACAGC AACTGAACCA CTATATAAGA AAGTTAgcct gaccGGAAAC 001120 001121 ATCTACTTCT AACTTTTTTT GTGTTTCTGC TCCAGCCTTT GGTTCCTCTC TTCCCCCGGC TGCCCGCTCT CACAGTCCTG 001200 001201 CTTCCTTGCC TTTTGCCTCA TATTGTCAGA TAGCTAGTTT TGGTTTTGCT GCTCCTCCCA GACAGTTTGA TGCATCTCAA 001280 001281 TTCAGCCAAG GCCCTGTGCC TGGCAGTTGT GCTGACTGTA TCCCACAGTT GGCGTCTTGT CCCACAGGAC CTCCCCAGAA 001360 001361 CCCCTCTTCT GCACCCTACT GTGGCATTGC TCTTTCAGGG AGCTCATTGA GCTCCACACA GTCTGCTCCA CTGCAACCTG 001440 001441 TTGGAGGCCG TACGACCAGG CCTTCTACTG GCACCTACCC TGAGCTGGAT TCTCCCCAGC TTCATTTCTC TCTTCCTACA 001520 001521 GACCCTGATC CCATCAGAGG TTTTGGGTCT TATCATCCCT CTGCTTCCTC TCCTTTTCAT TTTCAGCTTT CCGCAGCCCC 001600 001601 TTTGACTGCC AATAACCTCT GCCTTACCTG AGCCTCTTTA CAGTCAGTCC TGGACTACCC CAGTAGATCT CTGTCTTCTG 001680 001681 GACGAATCAG TAGGCAGTCT TGAAGGAAGT CAATGTCCTG ACTATGGTTT TCAAAGTTGT TCTGAAACAG AAAGTCATGA 001760 001761 GCTATGAGAA GTACTGCTTT TTACAAATAA AATGTGATAC AACAGACAAC AGTATCCCGT GCTTTCTGGA GGTAATAGAG 001840 001841 GAGGATGAAA CAGTGTGCAC ACAGCACTGG CAGGATGCTG TGCCTTGGAC TGCACTCTTC AGTCTACAGA GAGAGATGGC 001920 001921 TTCTGAAAAC TTACACCAGA ACTGCAATTT ATATTAAATC TTAATACAAA TGCTTTGCAC AGCTTAAACA AAAAGGCATT 002000 002001 GAAATTGTAG GTATAAAAAG AAGAGAACAT CTCCTGGACC TAATTGCCAC AAAGCAATAT TACAGTTTAT TTGCACCAGG 002080 002081 TTGGAAAAAA AGGGAATAGT GTTCAAATCA CTGATGGAAC TGGAATATGC TTCTATTTCC AGAATATTCC CTGGGCTTTT 002160 002161 GAAGCAATAA AGAAAGCAAG TGAATGGGTA AGAAGAACTG AAGGACAGTA CCCATCTATC TGCCCATGGC TTGAACTGGG 002240 002241 GAATGACTGG GACTCGGCCA CCAAGCAGTT ACAGGGACTC CAGCCCATAA ACACTGTGTC CCCTCTTCAT AGAGTCCTTC 002320 002321 ATTACAGTCA AGGCTAA |
Predicted Small Protein
Name | NONHSAT139809_smProtein_209:331 |
Length | 41 |
Molecular weight | 4751.4559 |
Aromaticity | 0.125 |
Instability index | 40.8025 |
Isoelectric point | 10.2977905273 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.0251722310546 |
Amino acid sequence | MLHSTANRHILRIFSQCSAGVFEYFNAKSKHSWRKEIKTK |
Secondary structure | LLLLHHHHHHHHHHHHHLLLHHHEELLLLLLHHHHHHLLL |
PRMN | - |
PiMo | - |