NONHSAT140143
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140143 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1821 nt |
Genomic location |
chr13-:99848628..99853011 |
Exon number |
2 |
Exons |
99848628..99850056,99852620..99853011 |
Genome context |
|
Sequence |
000001 GCAGTCAGGG GCGTGCGCCC GCTGGGTCAG CGCCCTCCTT CCTGCCGGGG AAGGGAAGTG CGTCGGTAGG GGAGGGCTCA 000080
000081 CCTCTCCAGG TTGAAACGAT GGCGGTCAGA ACCGCCTGAG GTAAAAACGG GTGGCACTGG GGAAGCGGAG GCGTAGCTCC 000160 000161 CGAGAGCCTC ACACTTGTGC TCAGTGCCGC CTCACCCCTG GTGGATCCGC GATGGCCGCG GATTCCCCTG GATTGCCGGC 000240 000241 GCTGGGCAGG AGCGCCACTT CTAATCTCTC CCGAGACTGG ACGCCCGGCG CCTTCCACGC GCGTTGTGTC TTTCCGGGCG 000320 000321 GTCCCTCGAA GCTGGCTACC CCGCGGGCTG TTGACTGCAG TGGGATCTGG TCACTCAGAT GCGGATAGAG GGCTAAATGC 000400 000401 AAGATGGTAT GGCATCCAGA CTCTGCTCAT AAGTATCTGC AGTGATCCAT ACCTTGATTG TACATCTACT CTGCATCCTG 000480 000481 AGGACCTGAA CATGCTAACT GGTGGCTGCA GATTTGTCTT CTAAGGAGCa agtgtggtct gtggacaggc agcttcagcc 000560 000561 tcacctggga ttttgtttgc actagaaagt gccaagccct accctagacc tattaaagca gaactggcgt ttaacaagac 000640 000641 accccaggta atttgtgtgc accttagagt ctgagatgca ctAGTGTagt gattcgcagg gggacaattt tgacctccag 000720 000721 gggacaatat ctggagacat ttttgggtgt cacaacgtgc tggggagagg gtgctactgg catctaatgg gctgaggcca 000800 000801 agggtgctgc taaacatctg gcaataccgg gccaacctcc cccctcctcc tgcccacagt aaagaattac cccgcctgga 000880 000881 ttgtcagtag tgcagaggta gaggaaaccc tACACCTGTG AAACTCATCT GACCTTTACT ATGAATTCCT GGATCTCCTG 000960 000961 GTGCATATCA TTTCTGTTGC CCTGGCTGAC ATTTCCACCT TTTCTCTTTT CTAGATTTTA TTACAAGAAC TCAATCTGTT 001040 001041 GGTCTCTAGG AATCACCTAT TGCCTTGCTA TGTTTTGTTG AACCTGTTTT TGAATCTGCT TTCTACATTG GGGAAATAGG 001120 001121 TATACGTTTG TAAACCTTAA AAGCTCTGTA TGCTATAAGG AAATCACCAG ACACGTGGAT AAGCTTTGCA GAGGTGAAGG 001200 001201 GCTGTCTCCA CCAGAGAGAC CCAGAAGGAG TCAGGGTAAG CCTGACTCAT CATGAGATCA GGTATCCCCA ATCCACAGCG 001280 001281 GACTTCCACA GTTCACCTTC CTAGGTAACC GCTCTGCCTT CCCAGGTAAA GTAGGAATAA TATCAGAACT TACAGCATAT 001360 001361 TTTGAGGTCA AATTGTAGAA TTTGGTGATT TCATTTTTAT TATTACTCAA CCTTTTATTT ACAACCAAAT TAATAAGGCT 001440 001441 ACTTACACAT AACAATGTGT GGACATACAC ATTAAGAGAA TCATTTGCTG CCTAGCACTC CTACCTAGGT ACTTTAAGAA 001520 001521 CATCATTGAG TGGATACTCC CTCTGCTGGG TAAAATACTT TGCCACAATA tcagctgaaa tgatacctct tccagactgt 001600 001601 aatggcagaa gtagttatcc cctctttcgt gctgtcatca cacttgatgc atgcctactt tataatactt atgccattgt 001680 001681 ctctgttatt gggtttctgt cttctactgt gaaagggtga gcccataaaa aacagggaat gtgtcttTCA AAATGTTGTA 001760 001761 TCCTGCTCAT TCTGATGTGA AGCCATTGTC CTCCTTCAAT AAAATAAAAC AGCATTTCTG A |
Predicted Small Protein
Name | NONHSAT140143_smProtein_1601:1711 |
Length | 37 |
Molecular weight | 4033.0219 |
Aromaticity | 0.111111111111 |
Instability index | 61.8666666667 |
Isoelectric point | 5.94024658203 |
Runs | 4 |
Runs residual | 0.0693473193473 |
Runs probability | 0.00432785726903 |
Amino acid sequence | MAEVVIPSFVLSSHLMHAYFIILMPLSLLLGFCLLL |
Secondary structure | LLEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTTTTTTiiii |