NONHSAT140400
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140400 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1870 nt |
Genomic location |
chr16+:8768474..8831330 |
Exon number |
2 |
Exons |
8768474..8768568,8829556..8831330 |
Genome context |
|
Sequence |
000001 GAGCAGACAC CCAGCGCTGC CGGAACTCGG GGCGCGCATC CCGCAAGTCG GAACCCGGCG GATCGGATCC CGCAGATCGG 000080
000081 AGACGGGGCC TGGAGGGTGG CAGCACGCAA AGGGTGTCCC TGTCCCTCAA GGGGTCATGG CCTCCATGTT GCTCGCCCAG 000160 000161 CGCCTGGCCT GCAGCTTCCA GCACAGCTAC CGCCTGCTGG TGCCTGGTAA GCCCCGGGGG TCTTGATAAG AACTGGTACT 000240 000241 AATGGAAGAT ACCATCCAGA CTAGGGATTC CTGGGCTGGA AGAGCCCTTG GGGATAAAGG GACCAGCCAG TGAGTGTTTC 000320 000321 TGGGACTGTC CCACtgtatt agtctgttct catgctgcta ataaaggtac acctgagact gggtatttta tgaagaaaaa 000400 000401 gaggtttaat ggtctcacag tttcatatgg ctggggaggc ctcacaatca tggcggaagg tgaaggagga acaaaggcac 000480 000481 gtcttacatg gctacaggca agagagcatg tgcaggggaa ctcccgtttg taaaaacatc agatcgtgtg agacttactc 000560 000561 aattgactat catgagaaca gcatgggaaa gacccacccc catgattcaa ttacctccca ctgggtccct cccatgacgt 000640 000641 gggaattatg ggagctatga tttaagatga gatttgaatg aggacacagc caaaccacat caCCCACTAT CCATAAAACT 000720 000721 GTCACCATCG CCACCTCCTT TCTCTCTCCC ATCTCTGTCA TATGATCCTG TCCCAAGTGC CTCGGTCTGA TGGGATTGGA 000800 000801 TCCACCCTGG AGCCACTCTG CCTGCAGGTA GGCGGTGGCC TCCACAGCCA GATGGCCCCA GGCCATCTCT GCAGGGACCG 000880 000881 CTGGGGAAAA CACACATCTG GGATCGCTGC TAAGGAACAA AGAAAGCCAT AAGCGACTCT GAAATTGACC TAGAGCCCAG 000960 000961 CTGTGCTTCA GGGTCACTGG ATCACTGGAT GGGAGGCACC ATCTTAGGAA TGTCTCACCC CCACTCTGCC CCACACCCAT 001040 001041 GGCCACTTGC ACTGGCTCCT TCTTCCTTCT GTTTGACGTC TTTGAGACCT Ccctcccaat agtcccatga gggagggagg 001120 001121 ctcaagtgaa tcctatttta caggtgagag aactcaggct tagagaagca aagccatttg cccaaggtca cacagccaCT 001200 001201 TGCAAGCAAC TCTGTCCGGC TCCAATGCTA ACTACTCCTC CGTGTGCCTC CATGTGGCTC TGGAGACAGA GCCGCCAGCA 001280 001281 GGAGCCTCCC TTCACATGCC CCGAGAGTGG CCTCCTGCAG AGATATAAAG TGCCTGGCTC GGGGCTGGCC ATGAAATAGG 001360 001361 TTCAGAAAGA CCAGTGAGCC TCCAGCCTGT CCCCAGCTCT CTCACAGCCC CTGTGCTTGT CATCATGGTG TCCCTTGTTG 001440 001441 GCAGGCCTTA CTGCCTTCTG AAGACAAACT GCTAGCCGTG TCCTTGGTCT GCATGTTGAA TGCTGGTGTG TATGTCCTGG 001520 001521 GTGGCATAAA CAGTAGGAGC GTTCGCCCCT CCCCAAGGAG TATGAGTAGG CTTTAtttta aaataaacat cttggccggg 001600 001601 cgcagtggct cacaactgta atcccagcac tttgggaggc gaggtgggca gatcacctga ggtcaggggt cgagaccagc 001680 001681 ctggccaaca tggtgaaacc ccgtctctac caaaaataca aaaattagcc aggtatggtg gtggatgcct gtaatcccaa 001760 001761 ctactcagca ggctgaggca ggagaatcgc ttgaatccag gaggtagagg tggcagtgag ctggatcgtg ccactgtact 001840 001841 ccagcctggg caacatcgag gctctgtctc |
Predicted Small Protein
Name | NONHSAT140400_smProtein_761:931 |
Length | 57 |
Molecular weight | 6006.8798 |
Aromaticity | 0.0178571428571 |
Instability index | 51.8482142857 |
Isoelectric point | 9.38189697266 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0253236429707 |
Amino acid sequence | MILSQVPRSDGIGSTLEPLCLQVGGGLHSQMAPGHLCRDRWGKHTSGIAAKEQRKP |
Secondary structure | LEEEELLLLLLLLLLLLHHHHHHLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |