NONHSAT140559
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140559 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1786 nt |
Genomic location |
chr16-:11361605..11363390 |
Exon number |
1 |
Exons |
11361605..11363390 |
Genome context |
|
Sequence |
000001 agactcagct taatctgacc caagggctcc taccctgaac cagtaGCTGG GACTATCCCC AGGGTACCCC TGAGAGCTGC 000080
000081 CCCAGCCTGG GGGTGAGGGT AAGGGGTAGG GGGCTTTGTC TTGGCTGAGC CACATCTCTC ACACCCCTGT GGCCTGGGCC 000160 000161 ATCATAATCA GCCCCAACTA TATAACCAGG TGGGCTGCCA GGGCCTCTGT AAAGCTAGGC CTGCTGGGAG AGGATGAGGA 000240 000241 GGAGGCCCTG CCCCTCCAAA CGTGGCCTCC TATGGACACC CAGACTCACA GCCTTCCTAT CACCCACACT CAGCTCCATA 000320 000321 GCAACTCTCA GCCCCAAAGC CGCACCTGCA CCCGCCATTG CCAAACCTTC AGCCAGAGTT GCAGACAGAG CCATCGTGGC 000400 000401 AGCCGGAGCC AGAGCTCCAG CCAGAGCCCG GCCAGCCACC GCAACCCAAC TGGAGCCCAC AGCTCATCCG GCCACCAGAG 000480 000481 CCAGAGTCCC AACACTAGTC CACCACCAAA GCGCCACAAA AAGACTATGA ACTCCCACCA CTCTCCCATG CGGCCCACCA 000560 000561 TCCTGCACTG CCGCTGCCCC AAGAACAGAA AGAACTTGGA AGGCAAGCTG AAAAAGAAAA AAATGGCCAA GAGGATCCAG 000640 000641 CAGGTGTACA AAACCAAGAC GCGGAGCTCA GGTACCCTTT AAGGAGGTGG GGAAGGGCCA CCGAGCCCAC AGATGATGGA 000720 000721 GAGCAGACCT TGGGGGCAGT GAGAGGAAGG CTGCAGCCAG GTCACAAAGG AACCACAGGC AAGAAGGAAG AGGGAGAAGA 000800 000801 GAAACAATGG CAGTTGGCTA GCTGAATGTA TGATACATTG ACGGAAAGTC TCTTTGAAAT TGGATGGGTT GATTAGGAgg 000880 000881 atggaaagat ggacagatag cagataagct agatgaaagc atgaatggag ttgagaggtt gggtggatga ctgggtgggt 000960 000961 aaacaataaa taggttatag aaaggatagt tggaagaatg cattggctga atgataggaa gtttggatac gattagctgg 001040 001041 atggatggat aaatggatga atgcactggc tggctagtta tttggttggt taggtagatg atcagtttga agattgtggt 001120 001121 tggtggatga attggttagA AATAGAGTTA AATAGTTGTA GAAGTTTTGA TGGGTTGGTT TGATTGGTTA AATATTATCT 001200 001201 TAATAGAGTA ATATAGAGTA ATTGAATAAA CAGAGAGAAG AATAGATATC TAGACTAATG GGATAGAATG GGAAAGAAAT 001280 001281 GTtgaataaa tgaatggaat gagtgaacta atgaatgggt ggatgaCAAA TGGAAGGGAT AAATGGATGG ATACCTGGAT 001360 001361 TCACATAGGT CAAAAGGACA CTGACGGTAG TCTAAACTCT ATCTATGTCC CATATTCAAT CACAAATGAG TAGTTGTAAG 001440 001441 ACCTTACAGG AGGTCAAGGA GGTCACTGAC TTCATGAAGT GCTCAGCTAT TAAAGGTTCC TTTCCCACTC TTATCCCTTA 001520 001521 GGATGGAAAT CCAACTAATG AGACCGCACT CCTTGGCTTG TTCCTGCGTG TTTCACCCAA AGGAGAAAAT GCTAGGATGA 001600 001601 AGTCAATCTT CTTGCAGGAA CATGTTACTA TGGTGATTTC TACGCAACAC TAATTAAAGC TTGTACCTGG AAGACTATCC 001680 001681 CTGAGTAGTC ATAGTCATTT TGATTTCACT AATAAAGGTG TTATGTGTTT TGGGGGCCTG CACAGGGGCA GAAATGAATG 001760 001761 GGGGTAGGAT GCCAAGAAGC CTGCAG |
Predicted Small Protein
Name | NONHSAT140559_smProtein_233:529 |
Length | 99 |
Molecular weight | 10356.0282 |
Aromaticity | 0.0204081632653 |
Instability index | 64.7775510204 |
Isoelectric point | 12.3550415039 |
Runs | 11 |
Runs residual | 0.0267976349418 |
Runs probability | 0.0241364359012 |
Amino acid sequence | MRRRPCPSKRGLLWTPRLTAFLSPTLSSIATLSPKAAPAPAIAKPSARVADRAIVAAGAR APARARPATATQLEPTAHPATRARVPTLVHHQSATKRL |
Secondary structure | LLLLLLLLLLLLLLLLHHHHHLLLLLLHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHLL LLLLLLLLLLLLLLLLLLLLLLLLLLLEEELHHHLLLL |
PRMN | - |
PiMo | - |