NONHSAT140600
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140600 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2103 nt |
Genomic location |
chr16+:11945444..11947546 |
Exon number |
1 |
Exons |
11945444..11947546 |
Genome context |
|
Sequence |
000001 GGCCCCGGAA GCGAGGGGGC GGGAACCGAG CCTCTGTGCG TCATTTCCGG GAGAGCGTGG GGTTTCGCTC TCCGGGGCAG 000080
000081 TGGCTGCTGT CAGAATCCCT TCTTTGAGGA GGCACCTGCT CTTCCGCTTT TCTCCAGCTT TCCATGAGCT GTGGGGAGTA 000160 000161 GCTTGGGTGT CCTCTCACTC TTACTAGATA GAAATCAAGA AAGCGCCTTG AGGCGAGAGA AGAGTCCCGT CAGGAGGCCC 000240 000241 AGTGGGGTCC TCCACACTCC ACGGTCCCCG CCTCCGGGAA GGCCGCGCGT GGCATGGGCA GAGCGCGGAA TCCTGGCTCC 000320 000321 ACTGCCCACC TGCCCGTTGA CTTTAGGCGA CGCCAACCCC AGGCTGGTGA GGAGTCCCTG AAATATAAGG CACGGGAGCC 000400 000401 ACCCGGAGCC ACCCGACCTG CCACGTTAAG CAGCATGAGG GACCGAAAGA TGAGTCTGGG CCAGTCTCTT AGGAGCTTCT 000480 000481 GGTCTCGCAG AGAGGCGGGA GGTAAGATCC TGTACAAATA AGCGTGGCTg gtcgtgcgcg tggctggcgt ctggaatccc 000560 000561 agcgctctgg gaggccgagg cggagggatt ccaggagttg gagaccagtc cgtgcatata cgagactccg tctctccaaa 000640 000641 aattataaac attagccggc gtggtggtgc gcgcctgtag tcccggctac ttgggaggcg gaggatggag gatcttgagg 000720 000721 aattcgaggc tcggtgagtt ctgatccgcg ccactgcact ccagcgtagg cagtagagtg agaccttgtc gctaaacaaa 000800 000801 CAGGTTAGGA GTGGAGGCTG GATAACTGAC AAATGGAATA CCTTAGAAca ggggagtcca atcttttggc ttccgtgggc 000880 000881 cacactggaa gaagaattgc ctgggcccat atataaaact aatactaatg atagccgacg agctttaaaa aaaaaatcta 000960 000961 aaaaaaatct cgtaatgctt taaggaagtt tacgaattcg tgttgggctg tattcaaagc ctggcctcca gggccgcacg 001040 001041 cggcccttgg gtaggacagg tttgCTTTGT AATGTCTTCC TCCCACTCCA CCCGCCTCCC CAGAGGTACC CTTACCAGTG 001120 001121 TCTCCTGGAA CCTTCCAGAG ATGTTCTAGG CATGTTTAGG AGATACTTCT CCTTTCTCTT GTTGGATGGG TTTAATTAAt 001200 001201 ttttttcctt tttttttttt ttttttttgt aatggagtct cgctctgtcg cacaggctgg agtgcagtgg cacgatctgg 001280 001281 gctcactgta tccttcgctt cccgggttca agcagttctc tgcctcagcc tcccgagtaa ctaggattac aggcacgcgc 001360 001361 cacaacgccc ggctaatttt tgtattttta gtaaagatgg ggtttcacca tcctggccag gctggtcttg aactcctgga 001440 001441 cttcatgatc cacctgcctc ggcctcccaa agtgctagga ttataggcgt gaaccaccac ggccAAtttt tttttaaaga 001520 001521 gggagtcttg ccctgacgcc caggctggag tgcagtgatc ttgtctcact gcagtctctc cctttcgggt tcaagcagtt 001600 001601 ctcctgtctc agcctcccga gtagctgaaa ctacaggcgg acgccaccat gcccggctac tttttttttt ttttttgaga 001680 001681 cagagtttcg ctcttgttgc ccaggctgga gtgcaatggc gagatctcag cccaccgcaa cctccgcctc ctgagctcaa 001760 001761 gctattctcc tgcctcagcc tccccagtag ctgagattac gggtatgcac caccatgcct ggcTAAtttt tttttttttt 001840 001841 ttttttgaga cggagtcttg ctctgtcgcc caggctggag tgcagtggcg cgatcttggc tcactgcaag cttcgcctcc 001920 001921 tgggttcacg ccattctcct gcctcagcct cccgagtagc tgggactaca ggcgcccgcc accacgcccg gctaattttt 002000 002001 tttttttgta tttttagtag agacaaggtt tcaccgtgtt agccaggatg gtctcgatct gacctctgcc ctcgtgatgc 002080 002081 gcccgcctcg gactcccaaa gtg |
Predicted Small Protein
Name | NONHSAT140600_smProtein_293:520 |
Length | 76 |
Molecular weight | 8486.6173 |
Aromaticity | 0.0666666666667 |
Instability index | 86.2213333333 |
Isoelectric point | 11.5585327148 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0449174664861 |
Amino acid sequence | MGRARNPGSTAHLPVDFRRRQPQAGEESLKYKAREPPGATRPATLSSMRDRKMSLGQSLR SFWSRREAGGKILYK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLHH HHHHHHHHLLLEEEL |
PRMN | - |
PiMo | - |