NONHSAT140667
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140667 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4351 nt |
Genomic location |
chr16+:14165179..14238642 |
Exon number |
3 |
Exons |
14165179..14165222,14173147..14173211,14234401..14238642 |
Genome context |
|
Sequence |
000001 ATCGCgcggc ggcggcggga gcggcggcgg cggcggccgg ggagGTTCAC AATAAAGGTG CTAAGAAAGA GAATGTAAGA 000080
000081 CAGGAAAATA ATTAAATATT CTTACCGAGT GTCTTCAATA GGCCGTGTTT AAGAGGCGTC TTACACTCCC TGTTGCCAGT 000160 000161 GGCTGGAACA CAATGGATCA CACAGGGGCG ATAGACACCG AGGATGAAGT GGGACCTTTA GCCCATCTTG CTCCAAGTCC 000240 000241 TCAGAGTGAA GCTGTGGCTC ATGAATTCCA GGAACTCTCC TTGCAGTCCA GTCAAAACTT ACCCCCTCTG AACGAAAGGA 000320 000321 AAAATGGTGA GTTCAGCATG TGCAATGGGA TCTTTGATTT AAAGATTTCC CCTCTTTGGG AGCCCAGTTT ATTCCTGTTT 000400 000401 GGTAGTAATA TTTTGGTCAG TTCAGCAGTC TGTCATGGAG GAGAACCCTG TAGAGGTACT GGATGGTTTT TAATAACAGG 000480 000481 CAGAATTTCA CTTTCCATTC AGTTCTTTCA TTATTTTCCC AGTAAGTATC TTTGGTAGTG ACGTTACCTT TGGAAATAAT 000560 000561 CTTTAGATTC AGCCATTTTA GCACAAGCAG ATGATTTCAT GCTGGAATGG CATTGGAAAG TAGGTTCCTG TGCTGATGCC 000640 000641 GGGGAAGTAC ATTGTGGATA TGACTGCATT CTCCTCCCAC TTTCTCCATC TCCGGTGTGT TGCACCGTAA TTTCACAAGT 000720 000721 GGCAAAGCTA TCTCAGTGAT GACTAAGAAG TCAGGAGCTT CTTATTTGAG TATTTATTAT ATTAATGGGT ATTGGATATA 000800 000801 GTCATATTCT CAGTCTTTGG CTGCCTCATC TTTGTCTACA AAATGAATAT TTTCTATTCA TTATCTGTTC AGGAAATTTT 000880 000881 CATCGCTCAC AGAGATATTC CAGAGTCTCC AGAAGACACA ATACTGTCAA TTTTTAACAT AAACAAATAG AGATAGATGA 000960 000961 CATATACTTT TAATACTTAA GATACAAAAT CTAACAAAGT AATGTTAAAA TTTGCAAACA CTCTAAGCAT GCACATTAAA 001040 001041 AAATAGAATT AAGGTTTTTT TCTGGAATTA CTATACCTTC CACAGTTCTG ATGAGTCCCA CACTCACAAG TATATTTGTA 001120 001121 AATTTCAGTT TTTTAAAAGC CAGAAGAAAT AAAACTGCTT TCCCTGCAGA GTGCCTCATT ATGTACCTTG TCACTTACTT 001200 001201 TCCTGGGTCC TGAGTGTTTT CCAGTCCTCC TACTTATTAG ACTTACCTTA TTTAGGAAAG TGGATTAAAA AAACCATACA 001280 001281 TATACCGTTC TTCTTAGGCC TTTAGTACAT GTCTTTGGTA TGTACTTGTT CTCCTTCAAA TAAAATGTGT TTTGCTTTGT 001360 001361 ATCTGAATCT TGTTGCTAGG CACAGCCCTT GACCATTTTG ATAGGTGttt tttttttttt ttgagacaga gtctcactct 001440 001441 gtcgcccagg cttgagtgca gtggcgtgat ctctggtcac tgcaatctcc gtctcttagg ttcaagtgat tctcctgcct 001520 001521 cagcctcctg agtagctggg attacaggca cgcaccacta tgcccagcta attttttgta tttttagtag agatggggtt 001600 001601 ttcaccatgt tggtcaggct ggtctcgaat ttctgacctt gtgatccacc cgcctcgacc tcccaaagtg ctgggattac 001680 001681 aggcctgagt cacagcaccc ggccAATTTT GATAGGTTTA AAGCAGCATC TTAGCTTAGG TGCTGTGAAA CCTTCAGGAT 001760 001761 GCTGTGGTTA ACTCACTGGT GATGACTTTT AAACCTTCCA TCttttcttt cttttttttt tttttttttt gagacggagt 001840 001841 ctcactctgt cgcccaggct ggagtgcagt ggcgcgatct cagctcactg caggctctgc ctcctgggct cacgccattc 001920 001921 tcctgcctca gcctcccaag tagctgggac tacaggcgtc caccaccacg cccagctaat tttttctagt tttagtagag 002000 002001 agacggggtt tcacagtgtt agccagaatg gttttgatct cctgacctcg tgatccacct acgtcggcct cccaaagtgc 002080 002081 tcggattgca ggcgtgagcc accacgccca gGTTAAACCT TCCATCTTTT AAGAACCCAC ATTTACCTTA GACAGTAGCT 002160 002161 GAGAGAATAT AGCCATATTT ACTGAAACAT GACTAAGTGT GATCAGATTT ACACAGTACA CTTGGACCAG TATAATGTCC 002240 002241 AAATTATTAC CCTAAAAGAA AATAAGAGTT GAACTGTTAT AAAATCAGAA CACACAGTTG TGCACAATAA TGGTCTTCTG 002320 002321 TAATGGGGAG GGAAGAGTGA GGAGACTTTA TCCTTTATGG TCATTTACAG GAAAAGTTAA TATGTATGCC AGAATATAAG 002400 002401 GTGGCAAGCC CAAATATAAA GCAGTCTCCC CTtataaact tctaaggaaa tagattaaat ggtaaaattt taaatttatt 002480 002481 aatgtagtta cattttatga agcattgcaa taatgtagaa ggattgcttt aaccactctc attgttcata aaaccatcct 002560 002561 actcaaagtc tatatgtgaa tctttgtggt cagtgttttt atcagtagta gaacccctgt gcatcatcca tctagcacta 002640 002641 atttccaggg tacatcttca tttctgtctc tttggtttga gttacagcag ctttgtaaca tgtgcatgat ttggcactga 002720 002721 acatttCTTT TTTTTTTTTT TTTttcatta ggcaaacatt tattaagcac ttaatatgta caagggacaa gggagacGCA 002800 002801 TTTTTTAATG TTGTCTTTCT TTAGTAACAG TCAAAATACC ACACAGAAAA TAACTTAAAA CTTAACCACA GTGTTATTAT 002880 002881 TGACCAATTG GGTTTAATAC GTTTTCTTCA AAAGATGTTT GATATTTTGT AGGAGACAAA ATAATTATTT AGCTTATGAG 002960 002961 AAGATAGGGC ATAATTTTGG AAATCCAGGC CTCTGAAGGA TGGAGGTGCA TGTTTTAGAC ACAAATAATC TTCCCGGTAT 003040 003041 CTTTGAATAA ATCCCATATT TGGTAGTACT GATTCTtttt tttttttttt ttatacttta agttttaggg tacatgtaca 003120 003121 caacgtgcag gttagttaca tatgtataca tgcgccatgt tggtgtgctg cacccagtaa ctcgtcattt aacattagat 003200 003201 atatctccaa atgctatccc tccccccggc actgaaaatt tcatgtctaa atcacaagta ccattcacaa aacagttttt 003280 003281 ttttttaaat tgtcttagtt gtatactcat aatctctata acataatact tGTTTGATTT GTCATTGGTT GTTACATTTT 003360 003361 ATGGGGTCTA GTTTCTGTTT TAGAATTTGG CTTTTTTTAA GCAGATAATG TATTCATGTG GTTTAAAATG TTATGATTAC 003440 003441 CTAGTGAAAA GGAGGTTACC CTCCCAATCT TGTCCCTTAC CTGCACAGTT ACTTTCCCAG AATTAACTGT TACTAGTGTT 003520 003521 CTTTCTGAGA GAATAATATT TGACTACGTT TTAAaaagca gtttttaaaa ggctactttg taacgacacc caacactttg 003600 003601 cattttaagg ttctaactgg gaataatgta ttggtttttt tctcttttcc ttcttttttc taattctgat taaaatattt 003680 003681 ctgtaagcct gaaagtagct tcaaaagaag ttggttttta agccaatgtg ttttcttcaa gagtcctttt ttgttcaata 003760 003761 cggagtaaat gaaagaacat ctcattctga gaaactgtgc aaagactcca ctatgagatt gttccctctt ttctaataaa 003840 003841 tgacttcagg aagttattat agaagcctta ttttatattc agacatataA TTTCAGGCTT ATGATATATT AACCTAATTT 003920 003921 GCATATACAT TCCAAGGCAT AAAAGGCATC CTTATTTGGC TGTCAGAAAT CTAGGTTTtt ggggaaatgc tgctcaaagg 004000 004001 atacaaattt cagttagata ggaggaataa gtttaagaga tctattgcaa aacatggtag ccaaggttaa taacaatgta 004080 004081 ttgtattgaa aattgctaag atagtagatt ttaagtgttg tcaccacgaa aaaaatagta aacatttgaa ataatgatgt 004160 004161 gttaattcaa ttgagcaatt ccacagtgca tacatatttc aaaaaaaagt acatgataaa tatatataat ttttgccggg 004240 004241 cgcagtggct caagcctgta atcccagcac tttgggaggc cgaggcaggc agatcacaag gtcaggagat cgagaccatc 004320 004321 ctggctaaca cggtgaaacc ccgtctctac t |
Predicted Small Protein
Name | NONHSAT140667_smProtein_3113:3325 |
Length | 71 |
Molecular weight | 8003.432 |
Aromaticity | 0.114285714286 |
Instability index | 56.6171428571 |
Isoelectric point | 9.02020263672 |
Runs | 10 |
Runs residual | 0.0019801980198 |
Runs probability | 0.0333333333334 |
Amino acid sequence | MYTTCRLVTYVYMRHVGVLHPVTRHLTLDISPNAIPPPGTENFMSKSQVPFTKQFFFLNC LSCILIISIT |
Secondary structure | LLEEEEEEEEEEEEEEEEELLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHHEEELL LLLEEEEEEL |
PRMN | - |
PiMo | - |