NONHSAT141131
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141131 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3405 nt |
Genomic location |
chr16+:23677789..23681193 |
Exon number |
1 |
Exons |
23677789..23681193 |
Genome context |
|
Sequence |
000001 TACTTCTCTC AGAAAACTTG GAAAACACTG AAAAGCAGAA GGAAGGAGAA AACCTCACAT TCCCTTAGCC CTACCCCAAG 000080
000081 ACAGTATCTT CTTCTCCATG TTGTTTTACA CAGCTGAAAT CATGTAGCAT ATACAGAGGC ACGTCATAAA TTCACAGATG 000160 000161 GAAAATAATA TGAACAGAGA GATTTGACAG TATATGATAC CTACCACTGA GTGGTTTAAT TGTTTTTCCA ATTAAAAAAT 000240 000241 AAATCTCATC TCTCAGATCA TTGAATCTGA GTTTCTAAGA TGAACAAAAT CATCACTCAG ATTCTTCGGG GAGGCATTTG 000320 000321 GCCATTCTAC CGTGTCATGC ATCTCTGCTT TTGCAGAGGA GGAAGGAGAG ACTTTTGTTT AGTAATTTCT CCATATTGGG 000400 000401 GTCCTGCTGT GAAAAAGTTT AGCTGTTCTT AGCAAGCACT GGACCAGAAC AGCCTCAGCG ATTATTTAAG TGATTGTCAG 000480 000481 ACATGCATCT GATTGAGGTG AGAAGGATAT TGCCAGAGAA ATATCTTAAC TTCTTGTAAC TTCTTCAAGC TCCTTAGAGC 000560 000561 TGGGTCTTTC TTTCCCCAGG ACTCTTCTCA GGGGAGCTCC CGGAGTGCAC TCAGGAGCTG ATGATTGACG TCACCAAGAG 000640 000641 CTACTACCAG AAGTTTTTGC CCCTGACGCA AGTCTAGCAT CTCTGCCTCA TGTCTTGAAT CTGCTTGAGC TCTAAGATGA 000720 000721 ACCTGGGGAC AAAGTGAGCC AGTCAGCACC TACAAAGAGC TTTTGTGTCT TTGACATCTA CCACCCTCCT CCTTTTAAAA 000800 000801 AATTTCTTTA GAATTTCTCA ATCTTCAAGG CTCTAAGTGC TTAAGAATTC ACTAACAGAC AGACCATCTG GAGGAGCTGT 000880 000881 CTTCAAATGC TGTGCTTACA CCTTATCTAT GAACAGTCAC TTTGTACCAT TATCTGTGGA ACACAGAATC ATCTGTTCCC 000960 000961 AACACTCCAG CCCCTTGGTC CTGTGGATGG CTGGATCCCG CCTGAAACGG ACCTGCAGAG CAGCAGCACC CTTCCGGTGT 001040 001041 GGAGGCTATG TAGCTGGTGC GCTGCTCACG GCCATTCACT GCCCATGCTG AGCGCCTCTC ACACAGGTAA TGCCCAGCTT 001120 001121 TTCTGCTGCT AACACATTTG GCCAGTTGTT GCAGTTGCTC ATCATCTTGG GAAAGGTGTT TGTGACTTTT CAGAGCCCAG 001200 001201 ATTCCTGTTG TCTATTAAAA CTTGAAGGGA GGGGTGAATA GTGTTTCTCT CTTCTTCCCA AAATGACCTT AGCTGTCCTA 001280 001281 GGATAGTTAG TAAAAGACTT TTTAGCATTT TGACCTAGGG CCTTTGGCTT TCACTAAAAG TGGGGACCTC AGTATCCCAG 001360 001361 ATTGTAATTT TGCCAAGTGT TAGATTTGAG TCTCTCATGT GGATGCATTA GTCAGGTGGT TACTCCTTGC TTCAAGGTAC 001440 001441 TTACCTTATT TCATTGAAGA CACCGCATTT GTGAACTCTT GCTTCCTGGC CTAGAACCAT TCAGCCTACC CTGTATTTGC 001520 001521 CATAAACTCC ACAATTCACA CCAAAATGTC TGTACTTAGA GCTAATTCGC ATATATACAG GAAGGGCTCT TAGAATCAGT 001600 001601 TTGTGGGCAC AGAGCCTCAG GAGTAAATGA AGTTACTAGG GCTGTTCTTA CCATCTCCTT CTGGCCAAAT AGCACAACAT 001680 001681 TTCCTCGTTC TGCTCTGACC TCTTAGCTTA GAAGGAAGAT TCAGAAGTGA GGGGCTAAGA AGGTTGTCCT TGCCTAATGC 001760 001761 TCTGATCTGT AAGTGAATAG GGCAGAACAG TTCAGCCTTG AGGTTAGAAT TTAGCAGGAG CTATCCTGAC TTAATATCCA 001840 001841 GTTGTGGGGT TTGCAAAACA AAACAGCTGT ATGTAATCAT TGCCACTAGT TCCATCTAGA ACTCCTTTCT AGTTTGTTAT 001920 001921 TTTTAAAATG TTTATacata aaaccaccaa aatacatagc ttcgacaaga tggaagttta tttctctctc ccataacagt 002000 002001 gcagtgatag tcagctggtc caggccaggc aaggggctgg tccatgatgt catcaggcac ccaggttcct actgtcttgc 002080 002081 catgtggcca cagttagcaa caaaggaggc tgtaaattta gtttctactt gggcagccaa aactctgagg aaggagattc 002160 002161 tgctagtaaa aaggagtggg ggaagaatgg ccattgggag acaacaagca gactcaacca GGCCTCTTTG TTGGCTTCCT 002240 002241 TTCCTCCTGC TGCACATGAG CCTTCGCCGT GCATTTGGAG CCatgacagc tgatagctcc agacctgcat cctcctagct 002320 002321 tgggggctct gaatgaaagg tttcttccct tccagttcga atttggaaac tcccaaagtt ctcaatggtt tgttgtgagt 002400 002401 tccatgtcct cttggatcag tcactgtggc caTGCATGTT TGGCCACATG ATTAATCCAG TCTGGGTCAT GACCTTTTCT 002480 002481 TCATCCAAAA CAAGGTGATG GGAAGACAAA AACAATAGCT ACTACAAACA ATAGGAGTTT ATAATTATGT GCTGATGTAT 002560 002561 TCGAAGATGT GTTGACAGTC GTGAGTGTGT ATCCTAGGAA AGGCGAGCTG GACTCTGTCT CCATGGTGGC TCTCACCCCA 002640 002641 GGGACCTAGG AACAGCCTGT CACCACACAA TTACTTTTAT AACCCTGGAG ATGAAAATCT CCTTGTCCTC AAAATACTTC 002720 002721 CAGAAGAACA ACCAGATGGG AAGGACCTTG GTTGGGACTC TTTCCAGTTC ACTTGGGGCa gagggaattt aatggctcac 002800 002801 gtagctgaaa aggatgggct agattgggct tcaggctgca tcccaggact ccaaacaggg atctgtctct ttggctctca 002880 002881 gctctgcttt catttgagtt ggctttattc ttgggcTTCA CAGTGTGGCC CCACAGCACC AGTTATTGAT aaaaagagct 002960 002961 cccctttgct gacagaactg ctggatttgg ttctcattgg tccagacgag gaaggtatcc agcctcaagt catcattgtg 003040 003041 gccaggaaga tggaatacac caaatggaca ggcctggcat gtacccacag agactgagag ttggtgctgg tggttgtggt 003120 003121 ggcagatgat attacctgaa gaagggacga atgggtgctg ggcaggacaa agcatcagct gtccaGTTCA GGCCTCTCCT 003200 003201 CTTTCCCTGG TGTCTTCATT TTCCTCCGTC TCCCTGCTGT CCCTTACCCT CTGCCCAATC TCTCATTACT CCTGGTCTTG 003280 003281 GGAGTTGCCT TCTGAGGATA CTCCACTGGG GGTACCTGAG CCTGGATTAG AGGGCAGGGG GAGGATATTG CCTAGCCAAA 003360 003361 GTGGGTGTTC AATAAAGAAC CATTTGGAGA TGGTCTTCTG TCTGG |
Predicted Small Protein
Name | NONHSAT141131_smProtein_2081:2317 |
Length | 79 |
Molecular weight | 8683.1513 |
Aromaticity | 0.0641025641026 |
Instability index | 74.5628205128 |
Isoelectric point | 11.5545043945 |
Runs | 7 |
Runs residual | 0.0439337085679 |
Runs probability | 0.0318091200445 |
Amino acid sequence | MWPQLATKEAVNLVSTWAAKTLRKEILLVKRSGGRMAIGRQQADSTRPLCWLPFLLLHMS LRRAFGAMTADSSRPASS |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEELLLLLLLLLLLHHHHHHHHHH HHHHHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |