NONHSAT141164

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT141164

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5680 nt

Genomic location

chr16+:24715880..24721968

Exon number

2

Exons

24715880..24717954,24718364..24721968

Genome context

Sequence
000001 ggaggctgaa gcaggagaat cacttgaatc tgggaggtgg aggttacagt gagccaacat cacaccacag cactccagcc 000080
000081 tgggtgacag aacaagactc cgtctcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagaaa gaaaaaaaTT ATGACATTAA 000160
000161 GTGAGTATAA GGGGGTATAT TATTTACGTA CTCACTTTTG TAGCAAATCC CCCAGCTGTG CACTTTTCTG GGTGCATGCA 000240
000241 ATACTTTCAC AAGTAAATAA ATATCTTTAT TTAAAACAGT AATAACAGAA AATCTCAGCA CACTAgggca cgatggttca 000320
000321 cacctgtccc agcactttgg gaggctgagg caagaggatc acttgaggcc aggagtttaa gaccagcatg ggcaacataa 000400
000401 cgagaccctg tctctacaaa aaaATTTAAA ATGAACttaa atttttttta atttttaaaa aGCTTAGCGC AAGTGGAGTC 000480
000481 ATTCTAGAAA GGTGATGCta atgattagta cctatatggt atttactatg aaccaatcac tgttcaaaac accttattta 000560
000561 tatttattca cttaaatcca gcaacaaccc tttgagctag atgctattat taattttgtt ttacagaggc agcaaccaag 000640
000641 gcacagagag gctaagaaac ttgcccagat cacacagtta atgcatggca catctagaat ttctagagtc tagaaccagc 000720
000721 caggatggcc tctcaaactc tatcttatac AGACTATCTA TTGATATTAG ATGAAttttt tttttttttt tgagacagaa 000800
000801 tctcactgtg tcacccaggc tggagtgcag tggcacgatc tcagctcact gcagcctcca actcccgggt tccagtgatt 000880
000881 ctcctgcctc agcctcccaa gtagctggga ttacaggcac atgccaccat gcccaactaa tttttgtaat tttagtagag 000960
000961 atggcgtttc gccatgttgg ccaggctggt ctcgaactcc tgacttctgg tgatccgcct gccttggcct cctaaagtgc 001040
001041 tgggattaca ggcatgagtc accgcaccca gccTTAGGTG AATTCTTAAT ACTGGTTAAA TGAGAATAAC TACATGACCT 001120
001121 TTCTTAGAGA CTACAAGAAT ATTTAACAAA ATTCAATATC CAGTAttgat atgataaaaa catatttaag tttaaaaata 001200
001201 gcatcttgtt taatgttgca cactagaagc attttccatt aaagtcagga acagggtaag agaaataata tttccactta 001280
001281 tttaatatta ttctaggtat ataaagataa aaaatacaaa ttttaagaat tacaaagtgg agacaacata atgactattt 001360
001361 gcaggtaata tgattgcata tctagccaat ccaagagtac tcctggaaag tctctcataa acaatgagtt aagtcagtaa 001440
001441 tgtagttggt tacacaatca acagcacttc tatgtttcag ggaaaaagct aggaaacaaa atggaagaaa accttgtact 001520
001521 taaaatagca ccaacgctca cacttacaac atcagcaaca acaaaaatgt aggaaaatga aagaagaaat aaatgaaaat 001600
001601 acacactttg ttcatcaatt agaagatttc atgatgtaaa gatgcacatt ctccctaaat taaacttaac ctttaatttt 001680
001681 atatcaataa aaatacatta tgaggttttt ttggaagtag cctcattgag tctaaagttc aaatggaaaa ataaacaagt 001760
001761 gaggctagcc aggaaaattt tgaaaaagga aagtaataaa aaagaattaa ccctcctagg tattgaagca cattataaag 001840
001841 ctacatttat atttttaaaa gtttagtact tggccgggcg cagtggctca cgcctataat cccagcactt tgggaggccg 001920
001921 aggtgggtgg atcacgaggt caggagatcg agactatcct gtctaacacg gtgaaacccc atctccacta aaaatacaaa 002000
002001 aaataaaatt agccgggcgt agtggcgggc gcctgaagca ggagaatggc gtgaacccag gagacggagc ttgcatggag 002080
002081 tgcagtagca cgatctcaac tcattgcggt ctctgtctcc agggtgcaag agatcctcct tcctcaccct cctgagtagc 002160
002161 tagggccaca ggtgcatgcc accacacttg gctaattttt gtatttttag tagagacagg gtttcaacat attggccagg 002240
002241 ctggtctcaa actcctgacc tcaagtgatc cacctgcttt ggcctaccaa agtgctagga ttacaggcat gtgccaccgc 002320
002321 atccagccag ataaacaatt taaatgtaaa taaataaaac aggatgaaag gggaacatgg gcgcacacac acacacacac 002400
002401 acacacacac acatcttaaa taagagaaaa tctttctaag ccagacacaa aactcagatg ctaaaaagaa aaaattagct 002480
002481 acataaaatt caaaatagct gcacagtata aaaataccat aggctaaatt aaaaggtagg taacaagcta ggagaaatgt 002560
002561 ttctacaatt catgcaacag acgaagaata aatgtcctta ataaacaaag agctcttata attaaaaaga aaaaatatga 002640
002641 atagttttta aattgggcaa agaatgatgt agctcacaaa aaaagaaata taaattgctc ataaatacat aaaaacacac 002720
002721 aaaaaatttc tcaaccttac tagtgactaa agacatacaa attaaagtga gatgagttgg caaagatagt gttaaataat 002800
002801 ggccacaatg ggccagtgcg gtggctcacg cctgtaatcc cagcactctg ggaggccaag gtgggtagac gtcttgaggc 002880
002881 caggagttca agaccagcct ggccaacatg tcaaaaccct gtctctacaa aaaatacaaa cattagcccg gtgtgatgac 002960
002961 acgtgcctgt aatctcaact gctcagaagg ctgaggtggg aggactgctt gagtctggga ggtggagatt gtagtgagct 003040
003041 gagatcgtgc cactgcactg cagcctgggt gacagagtga gactctgtca aaaaaaaaaa aacacacaca cacacaatga 003120
003121 gtgagagcag aacaagcagg tgctttcata aattgctggt gaggatgaaa actgACATGC TCTTCGTTTT TGTTTGGTTG 003200
003201 GTTTTTGGGG GTTTTGGTTA CTGTAACTTT ttccagtagt ttttggggta caggtggttt ttgattacat ggatgagttt 003280
003281 tttttttttt tgagacggag tctcgctctg tcgcccaggc tggggtgcgg tggcgcgatg tcagctcact gcaagctcca 003360
003361 cctcccaggt tcacgccatt ctcaggcctc agcctcctga atagctgggt ctacaggcac ccgccaccac gcccggctaa 003440
003441 tttttttgta tttttagtag agacggggtt tcaccatgtt agccaggatg gtctcgatct cctgacttgg tgatccgcca 003520
003521 gtctcggcct ctcaaagtgc tgggattata agcgtgagcc accgccccca gccatggatg agttctttag tggtgaattc 003600
003601 tgagactttg gtgcacccgt caccctagca gtgtacagtg tacactgtct ccaatatgta gtcttttgtc tctcacccac 003680
003681 cttccaacct cccccttcga gtccccagag tccattatat ggctctgtat gtttttgcat cctcatagct tagctcccat 003760
003761 ttataattga gaacataccg tatttggttt tccatttctg acttacttca cttagaataa tggccttcgg ttccaaccaa 003840
003841 gttgctgcaa aagacattat tttgtttctc ttcgtggctc agtagtattc catgatacac atatgccata ttttctttat 003920
003921 ccgctgattg gtcagtgggc atttaggttg gttccatagc cttgcaattg tgaattgtgc tgccataaac gtaagtgtgc 004000
004001 atgtgtcagc caagcacagt ggctcacgcc tgtaatccca gcactttggg aggctgaggc aggcagattg cctgaggtcg 004080
004081 ggagttcgag accagcctga tcaacatgga gaaaccccgt ctctactaaa aatacaacaa ttagccgggc gtggtggtgc 004160
004161 atgcctgtaa ttccagctac tcgggaggct gaggcaggag aattgcttga acccaggagg tggaggttgc ggtgaaccga 004240
004241 gatcatacca ttgcactcca gcctgggcaa caagagtgaa actctgtctc aaaaaaaaaa aaatgtttgg gtgtgacttt 004320
004321 ttcatataat gacttctttt cctttgggta gatacccagt attgagattg ctggattaaa tggttgatct acttttagtt 004400
004401 ctaaatttaa ggaatctcca tactgttttc cattgtggtt ttactaattt acattcccac cagcagtgAC GCACTCTCCT 004480
004481 TGAAAGGCAA ATTAACATTT TTGATCACAT TTTAAAATGT TCATTGAGTT TCAGGTCAAG GCTAAGTGAG GAAAAATAAA 004560
004561 TAAAATGTTT ATATTggcca ggcctggtgg ctcacactgt aatcttagca ctttgggagg ctgaggtagg tggatcgctt 004640
004641 agaggccagg agttccagtc cagcctgggc aacatagaaa gaccccatct ctaccaaaaa tacaaaaatt agctgggcat 004720
004721 ggtggcacaa gcctgtagtc cctgctatgc gggaggctga ggcaggagga tcacttgagc ccaggaggtc gagactgcag 004800
004801 tgagctatga ttacactatt gcgtgccagc ctgggcaaca gaacaagacc ctgtctcaaa aaaaaaaaaa aaaagaaGTT 004880
004881 TATATTCTTT GACTCGGCTA TTCCACTTCG ATGATTCTCT GTCACAGGTG TCTTAAATAC ATGAACAAAG Gtataaattt 004960
004961 tttttaaatt tgtaaatatg ctgggcgcag tggttcacac ctgtaatccc agcactttga gagcccaagg caggcagagc 005040
005041 acctgaggtt gggcgttcaa gaccagcctg accaacatgg aaaaaccgtc tctactcaaa atacaaaatt agccaggcgc 005120
005121 agtggcacat gcctgtaatc ccagctactc aggaggctga ctcaggagaa tcccttgaac ccaggaggtg gaggttgcag 005200
005201 tgagccgaga tcgcgccatt gcactccagc ctgggcaaca agagcggaac ttcatctcaa aaaaaaaaaa aaaaTTGTAA 005280
005281 ACACAAACTA ACATAAAAGT TCAAAGCACA GAAAAAATAA CTTTTTTCCT CAACAAAATA AGAGTTCATT GTTGGCCAGG 005360
005361 CATggcatgg tggctcacac ctgtagtccc agcacttcga gaggctgagg caggaggatc actggagccc aggagttcaa 005440
005441 gaccagcctg ggcaacatag aaaggtgcca tccctacaaa aaacagaaaa attggctaga tgtggtggtg cacgcctgta 005520
005521 gtccTGCAGT GTAGTTTATG TGAGAATTCT Tcatctttga caggagcagc acagggctaa tgctgtgctc ttcttattgc 005600
005601 atcctactaa gcagtgctag atttcatttg ttccaatcct gatgacattc actttgatca ctcaattagg gtggtatctg 005680
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Predicted Small Protein

Name NONHSAT141164_smProtein_3116:3238
Length 41
Molecular weight 4829.711
Aromaticity 0.225
Instability index 44.0825
Isoelectric point 9.38262939453
Runs 7
Runs residual 0.00302419354839
Runs probability 0.0688798041739
Amino acid sequence MSESRTSRCFHKLLVRMKTDMLFVFVWLVFGGFGYCNFFQ
Secondary structure LLLLLLLHHHHHHHHHHHLLLEEEEEEEEELLLEEELLLL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo