NONHSAT141164
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141164 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5680 nt |
Genomic location |
chr16+:24715880..24721968 |
Exon number |
2 |
Exons |
24715880..24717954,24718364..24721968 |
Genome context |
|
Sequence |
000001 ggaggctgaa gcaggagaat cacttgaatc tgggaggtgg aggttacagt gagccaacat cacaccacag cactccagcc 000080
000081 tgggtgacag aacaagactc cgtctcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagaaa gaaaaaaaTT ATGACATTAA 000160 000161 GTGAGTATAA GGGGGTATAT TATTTACGTA CTCACTTTTG TAGCAAATCC CCCAGCTGTG CACTTTTCTG GGTGCATGCA 000240 000241 ATACTTTCAC AAGTAAATAA ATATCTTTAT TTAAAACAGT AATAACAGAA AATCTCAGCA CACTAgggca cgatggttca 000320 000321 cacctgtccc agcactttgg gaggctgagg caagaggatc acttgaggcc aggagtttaa gaccagcatg ggcaacataa 000400 000401 cgagaccctg tctctacaaa aaaATTTAAA ATGAACttaa atttttttta atttttaaaa aGCTTAGCGC AAGTGGAGTC 000480 000481 ATTCTAGAAA GGTGATGCta atgattagta cctatatggt atttactatg aaccaatcac tgttcaaaac accttattta 000560 000561 tatttattca cttaaatcca gcaacaaccc tttgagctag atgctattat taattttgtt ttacagaggc agcaaccaag 000640 000641 gcacagagag gctaagaaac ttgcccagat cacacagtta atgcatggca catctagaat ttctagagtc tagaaccagc 000720 000721 caggatggcc tctcaaactc tatcttatac AGACTATCTA TTGATATTAG ATGAAttttt tttttttttt tgagacagaa 000800 000801 tctcactgtg tcacccaggc tggagtgcag tggcacgatc tcagctcact gcagcctcca actcccgggt tccagtgatt 000880 000881 ctcctgcctc agcctcccaa gtagctggga ttacaggcac atgccaccat gcccaactaa tttttgtaat tttagtagag 000960 000961 atggcgtttc gccatgttgg ccaggctggt ctcgaactcc tgacttctgg tgatccgcct gccttggcct cctaaagtgc 001040 001041 tgggattaca ggcatgagtc accgcaccca gccTTAGGTG AATTCTTAAT ACTGGTTAAA TGAGAATAAC TACATGACCT 001120 001121 TTCTTAGAGA CTACAAGAAT ATTTAACAAA ATTCAATATC CAGTAttgat atgataaaaa catatttaag tttaaaaata 001200 001201 gcatcttgtt taatgttgca cactagaagc attttccatt aaagtcagga acagggtaag agaaataata tttccactta 001280 001281 tttaatatta ttctaggtat ataaagataa aaaatacaaa ttttaagaat tacaaagtgg agacaacata atgactattt 001360 001361 gcaggtaata tgattgcata tctagccaat ccaagagtac tcctggaaag tctctcataa acaatgagtt aagtcagtaa 001440 001441 tgtagttggt tacacaatca acagcacttc tatgtttcag ggaaaaagct aggaaacaaa atggaagaaa accttgtact 001520 001521 taaaatagca ccaacgctca cacttacaac atcagcaaca acaaaaatgt aggaaaatga aagaagaaat aaatgaaaat 001600 001601 acacactttg ttcatcaatt agaagatttc atgatgtaaa gatgcacatt ctccctaaat taaacttaac ctttaatttt 001680 001681 atatcaataa aaatacatta tgaggttttt ttggaagtag cctcattgag tctaaagttc aaatggaaaa ataaacaagt 001760 001761 gaggctagcc aggaaaattt tgaaaaagga aagtaataaa aaagaattaa ccctcctagg tattgaagca cattataaag 001840 001841 ctacatttat atttttaaaa gtttagtact tggccgggcg cagtggctca cgcctataat cccagcactt tgggaggccg 001920 001921 aggtgggtgg atcacgaggt caggagatcg agactatcct gtctaacacg gtgaaacccc atctccacta aaaatacaaa 002000 002001 aaataaaatt agccgggcgt agtggcgggc gcctgaagca ggagaatggc gtgaacccag gagacggagc ttgcatggag 002080 002081 tgcagtagca cgatctcaac tcattgcggt ctctgtctcc agggtgcaag agatcctcct tcctcaccct cctgagtagc 002160 002161 tagggccaca ggtgcatgcc accacacttg gctaattttt gtatttttag tagagacagg gtttcaacat attggccagg 002240 002241 ctggtctcaa actcctgacc tcaagtgatc cacctgcttt ggcctaccaa agtgctagga ttacaggcat gtgccaccgc 002320 002321 atccagccag ataaacaatt taaatgtaaa taaataaaac aggatgaaag gggaacatgg gcgcacacac acacacacac 002400 002401 acacacacac acatcttaaa taagagaaaa tctttctaag ccagacacaa aactcagatg ctaaaaagaa aaaattagct 002480 002481 acataaaatt caaaatagct gcacagtata aaaataccat aggctaaatt aaaaggtagg taacaagcta ggagaaatgt 002560 002561 ttctacaatt catgcaacag acgaagaata aatgtcctta ataaacaaag agctcttata attaaaaaga aaaaatatga 002640 002641 atagttttta aattgggcaa agaatgatgt agctcacaaa aaaagaaata taaattgctc ataaatacat aaaaacacac 002720 002721 aaaaaatttc tcaaccttac tagtgactaa agacatacaa attaaagtga gatgagttgg caaagatagt gttaaataat 002800 002801 ggccacaatg ggccagtgcg gtggctcacg cctgtaatcc cagcactctg ggaggccaag gtgggtagac gtcttgaggc 002880 002881 caggagttca agaccagcct ggccaacatg tcaaaaccct gtctctacaa aaaatacaaa cattagcccg gtgtgatgac 002960 002961 acgtgcctgt aatctcaact gctcagaagg ctgaggtggg aggactgctt gagtctggga ggtggagatt gtagtgagct 003040 003041 gagatcgtgc cactgcactg cagcctgggt gacagagtga gactctgtca aaaaaaaaaa aacacacaca cacacaatga 003120 003121 gtgagagcag aacaagcagg tgctttcata aattgctggt gaggatgaaa actgACATGC TCTTCGTTTT TGTTTGGTTG 003200 003201 GTTTTTGGGG GTTTTGGTTA CTGTAACTTT ttccagtagt ttttggggta caggtggttt ttgattacat ggatgagttt 003280 003281 tttttttttt tgagacggag tctcgctctg tcgcccaggc tggggtgcgg tggcgcgatg tcagctcact gcaagctcca 003360 003361 cctcccaggt tcacgccatt ctcaggcctc agcctcctga atagctgggt ctacaggcac ccgccaccac gcccggctaa 003440 003441 tttttttgta tttttagtag agacggggtt tcaccatgtt agccaggatg gtctcgatct cctgacttgg tgatccgcca 003520 003521 gtctcggcct ctcaaagtgc tgggattata agcgtgagcc accgccccca gccatggatg agttctttag tggtgaattc 003600 003601 tgagactttg gtgcacccgt caccctagca gtgtacagtg tacactgtct ccaatatgta gtcttttgtc tctcacccac 003680 003681 cttccaacct cccccttcga gtccccagag tccattatat ggctctgtat gtttttgcat cctcatagct tagctcccat 003760 003761 ttataattga gaacataccg tatttggttt tccatttctg acttacttca cttagaataa tggccttcgg ttccaaccaa 003840 003841 gttgctgcaa aagacattat tttgtttctc ttcgtggctc agtagtattc catgatacac atatgccata ttttctttat 003920 003921 ccgctgattg gtcagtgggc atttaggttg gttccatagc cttgcaattg tgaattgtgc tgccataaac gtaagtgtgc 004000 004001 atgtgtcagc caagcacagt ggctcacgcc tgtaatccca gcactttggg aggctgaggc aggcagattg cctgaggtcg 004080 004081 ggagttcgag accagcctga tcaacatgga gaaaccccgt ctctactaaa aatacaacaa ttagccgggc gtggtggtgc 004160 004161 atgcctgtaa ttccagctac tcgggaggct gaggcaggag aattgcttga acccaggagg tggaggttgc ggtgaaccga 004240 004241 gatcatacca ttgcactcca gcctgggcaa caagagtgaa actctgtctc aaaaaaaaaa aaatgtttgg gtgtgacttt 004320 004321 ttcatataat gacttctttt cctttgggta gatacccagt attgagattg ctggattaaa tggttgatct acttttagtt 004400 004401 ctaaatttaa ggaatctcca tactgttttc cattgtggtt ttactaattt acattcccac cagcagtgAC GCACTCTCCT 004480 004481 TGAAAGGCAA ATTAACATTT TTGATCACAT TTTAAAATGT TCATTGAGTT TCAGGTCAAG GCTAAGTGAG GAAAAATAAA 004560 004561 TAAAATGTTT ATATTggcca ggcctggtgg ctcacactgt aatcttagca ctttgggagg ctgaggtagg tggatcgctt 004640 004641 agaggccagg agttccagtc cagcctgggc aacatagaaa gaccccatct ctaccaaaaa tacaaaaatt agctgggcat 004720 004721 ggtggcacaa gcctgtagtc cctgctatgc gggaggctga ggcaggagga tcacttgagc ccaggaggtc gagactgcag 004800 004801 tgagctatga ttacactatt gcgtgccagc ctgggcaaca gaacaagacc ctgtctcaaa aaaaaaaaaa aaaagaaGTT 004880 004881 TATATTCTTT GACTCGGCTA TTCCACTTCG ATGATTCTCT GTCACAGGTG TCTTAAATAC ATGAACAAAG Gtataaattt 004960 004961 tttttaaatt tgtaaatatg ctgggcgcag tggttcacac ctgtaatccc agcactttga gagcccaagg caggcagagc 005040 005041 acctgaggtt gggcgttcaa gaccagcctg accaacatgg aaaaaccgtc tctactcaaa atacaaaatt agccaggcgc 005120 005121 agtggcacat gcctgtaatc ccagctactc aggaggctga ctcaggagaa tcccttgaac ccaggaggtg gaggttgcag 005200 005201 tgagccgaga tcgcgccatt gcactccagc ctgggcaaca agagcggaac ttcatctcaa aaaaaaaaaa aaaaTTGTAA 005280 005281 ACACAAACTA ACATAAAAGT TCAAAGCACA GAAAAAATAA CTTTTTTCCT CAACAAAATA AGAGTTCATT GTTGGCCAGG 005360 005361 CATggcatgg tggctcacac ctgtagtccc agcacttcga gaggctgagg caggaggatc actggagccc aggagttcaa 005440 005441 gaccagcctg ggcaacatag aaaggtgcca tccctacaaa aaacagaaaa attggctaga tgtggtggtg cacgcctgta 005520 005521 gtccTGCAGT GTAGTTTATG TGAGAATTCT Tcatctttga caggagcagc acagggctaa tgctgtgctc ttcttattgc 005600 005601 atcctactaa gcagtgctag atttcatttg ttccaatcct gatgacattc actttgatca ctcaattagg gtggtatctg 005680 |
Predicted Small Protein
Name | NONHSAT141164_smProtein_3116:3238 |
Length | 41 |
Molecular weight | 4829.711 |
Aromaticity | 0.225 |
Instability index | 44.0825 |
Isoelectric point | 9.38262939453 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0688798041739 |
Amino acid sequence | MSESRTSRCFHKLLVRMKTDMLFVFVWLVFGGFGYCNFFQ |
Secondary structure | LLLLLLLHHHHHHHHHHHLLLEEEEEEEEELLLEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo |