NONHSAT141453
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141453 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2635 nt |
Genomic location |
chr16-:27458990..27464714 |
Exon number |
3 |
Exons |
27458990..27461127,27464064..27464243,27464418..27464714 |
Genome context |
|
Sequence |
000001 ATCACTTCTG CTCACAACTG CCCAGTCCCA GCCAGTCACA TGGCCCCATC TGGCTACAGA GGGTCAGGAT GTACAATCCT 000080
000081 GCCATGTGCC CAGCATATGG TGAACAGCAT AATGACTTCC ATACTCATGT ATCTAAACGG TCCAGGAGAA ACGTGGTTTC 000160 000161 AGGCATGGCT GGATCCGGGA TCTCAAGAGC TATTACCATC TCTCAGCTCT GCTTTCTTGT GTGTTTCTTG CTGCCCCTCC 000240 000241 CAGTACCCTC CTTACAGCTT AGTAATCCCA GCAGAAAGAG AGCATGGACC AGCTAGGGTA CGTTCCAGCA GAGCAAGGTG 000320 000321 AAAAAGAGCT GAAAGTGGCA TCAGAAGCCC AGAGTTCTGG TTCCAGCTCC GACCACTCAT TCAGTGTGTG ACCTCAGGCA 000400 000401 GGTCACCAGC CTGAGCTGTG CCTTCATTTC ATCTGTCAGA CGGATGACTC TGCCCCTCAG AGCTTGCAGA CGGCAAGGTG 000480 000481 ATAAGGAACA ATATGGACTT CTTGCAGCTC CTGGAGGCAG ACGCTGGAGG GCTGGGTTCC GCCTCAGTCA CAGGCAATGC 000560 000561 CCTGATCCCA CAAAGCCCCG GAGATGCTGT GGACCAACTT GCAACACAAG ACCCTAGGAG GGAGGACGGC TGTTGTCATC 000640 000641 TGTTGACCAC AAACACGTTT ACTGTGCACA CTTGTGCACA TGGGTGAGCT CCGTGAGTCC AGACATGTAC AGGGCAGGTG 000720 000721 AATGCATGGA GTACCATGGG CATTATCCCA GGCCCACAGG CACGTGCAAT CACACACACA CGTGGACATG CCACTGCGCA 000800 000801 CCTAAGACAC ACACACACAC ACACACATGC ATATGCACAC ACACACATAT GCACACACAC ACACAGACAC TGTAAACATC 000880 000881 AGGCTCAAAG GCCCATCCAG GAGACCAAAG GCTGCAGGTG TCTTCACATC ACAGCCCAGG TGACCTTGTC TCTGGCTCAG 000960 000961 GGCCCAGTGG CCTGGCCAGC TCTGGACATC CAGTCAGCCT CATTAGCTGG CCTGGGGTCC AGGGCTCGAA AGTGGCGGAG 001040 001041 GAATGACCAC CCACTGGCGG AGGTAGCTCC GGGGGGGTCC TTCGTCCCCG GGGCTGGTGA AGTCACACTC CACAGGGCTG 001120 001121 CTGCAGTCAG AGCCCACAAA GCCACTGTCA AACGTGTCCA TATCCAGGCC GGCCAGGGGT GAGCCCGCCT CACTCTCTGA 001200 001201 GACCCCTCCA GGTGACCGGC CACCCCAGGG CAGTCCCCCA GCCCAGTCCT CCCCATCTGC AAGGGGTGGC TTTAGTCTGT 001280 001281 CCAGGAGGCT TCCCAGGGGC CCTCCTAGCC CAGGGCTGCC AGCTGAGACA CAGCCACAGG ACAGGACTGT GGTCCCTGCA 001360 001361 TCCAAGAGTG GGTCCTCTAG GCCTGGGCTG GGCTCCAGGC CAGCATCCAG GTCCAGGGCT GGGTAGCCGT CATCCTCACA 001440 001441 GCTGCAGGGC CAGGTGCATG GCCCCTCTGC ATCTAGCACA GTCACTGTGT CAATGGACAC CAGGCCGTAT GGCCGATCCC 001520 001521 TCTCCTCACT GTAAGCTGAG CCCCCCGAGT TCTGGGCTGT CGGCCAGAAG CTGGGCTTGG GCACACCGTC AGACTCCACC 001600 001601 AGCTCTGCTG GTTCTTGTAG CTCCGTGAGC TGCAGCCTCT TGGCCGGGCT CCGTGGTGGG TGGCAGCTGT ACACCTCCAG 001680 001681 GGTGGAGGGC ACCTCTGGGC TCCAGGGTCC CAGCTCCAGG CTGGAGCCAG TGAAGGGTGC ACCCACCCAT TTCTGTGAGA 001760 001761 GAGAAAAAGA GAGAGTCATA GCACAGGATG AGGGTAAGGT GAGGGTTTAT TTTTCTTTTA CTTTTATTCT TTTGAGACAG 001840 001841 TCTGGCTCTG CTGCCCAGGC TGGAATGCAG TGGTGCCATC TCGGTTCACT GCAACCTCTG CCTCCCAGGA TCAAGTGATT 001920 001921 CTCCTGCCTC AGCCTCCCAA GTAGCTGGGA CTACAGGCGC CTGTCACCAC ACCTGGCTAA TTTTTGTATT TTTAGTAGAG 002000 002001 ACGTGGTTTC ACCATGTTGG CCAGACTGAT CTTGAACTCC TGACGTCAGG TGATCCACCC GCCTCAGCCT CCCAAAGTGT 002080 002081 TGGGATTACA GGCGTGAGTC ACTGTGCCCA GCCAAGGTGA GGGTTTAAAC AGACAGAAAG ACAGACACAG ACACAGAGAC 002160 002161 AAGACAAAGA GACATCAAGA GAGACAGACA GAGACATGAA GATAGACAAA GACACCGAGA GACAGAGAGA GAGAGAGGAA 002240 002241 TCAGGACCAC AATGTGCTCC CACCCTAGTG GATCCCCCTC CTACTCTGGG CCTCAGTTTC CCTACTTGTA GAAGGGAGTT 002320 002321 GCTACCCTTA GTAGTGTGAC CAGTCAGACA ACTGGTGGCC CCATAGTCCA GGCAGGGACC AAGATTCCTG AGTCAAGGAG 002400 002401 ACATGGGGGC AGGAGGGCCT GAGGTCTGAG GTACCCCTGA GCCATCTCCT GCTTTCCCGC CTCCTTGATG CTTCTTGAAA 002480 002481 CCTAGCACTC TCCTGGTTTA TGTGTCCCCA CCAGACAGAC ACTTGGCCCC CGGACATAAG TCTTGTCTCT TCTGTCCATG 002560 002561 GCTGTAGCCC CAGTGCCTAG CACAAAGTAG GTGCTCAATA AATGTTTATT AACGAAAAAA AAAAAAAAAA AAAAG |
Predicted Small Protein
Name | NONHSAT141453_smProtein_68:295 |
Length | 76 |
Molecular weight | 8332.5874 |
Aromaticity | 0.08 |
Instability index | 73.908 |
Isoelectric point | 10.0719604492 |
Runs | 5 |
Runs residual | 0.0822695035461 |
Runs probability | 0.0257198374846 |
Amino acid sequence | MYNPAMCPAYGEQHNDFHTHVSKRSRRNVVSGMAGSGISRAITISQLCFLVCFLLPLPVP SLQLSNPSRKRAWTS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTii iiiiiiiiiiiiiii |