NONHSAT141455
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141455 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2798 nt |
Genomic location |
chr16-:27471997..27474794 |
Exon number |
1 |
Exons |
27471997..27474794 |
Genome context |
|
Sequence |
000001 GTGTGAGGGT CTTTGAGGGT CTTTCCCCAG GTACCAGCTC TGACAGCCTG CCCGGCACCT TGGTTCTTGG CAGGGGTACT 000080
000081 TGGAGGGGCG CAGTGGGCGA GCAGCAGGCG TGCTGAGCAC TGGCAGTGCC CAGGTCGGCC TGGAATGAGG GCTGCGCTTC 000160 000161 CAGAATGCCC AGGGCGCTGG TGGAGAACCA TGCCTGGTGC TGTCAGCTGT GCTTCACTGG CTCCTCATGG CCCACAGGCA 000240 000241 CCTCACCCAC TCCTGCAGAT GAGCCAGGGG TCCACAGAGG GATAAGCCCT GAATGCCCAG CTGCCCCCGG GACAACCATG 000320 000321 CCACAGAGTT ACAGGAAGCA AGGGGGCCGC AGAAGCCCCT CTGGTGGGGG CGCCTCCCAT GAGTGTGTGT GCTGACCCCA 000400 000401 GATTGGCAGG GCCCAAGTGC CCTGTGTCCT GGCTTTCAAG AGCTCAGGTG TGCCCCCTCC AAGGCCCAGC CATAGCGATG 000480 000481 AGAGCCTGGT GTCCAGCTCT TCTGGGTCCG CCCCACTCGT GGGCCCCGGG TGGCTGTTCA GTCTCTGGTT TAGTAACAGA 000560 000561 AACGTCTGTT TCGAGGAAAG TGTGCCTGGA ACTCTGCACA TGGCGTGGAG CAGAGCTTCA GGGTCACGCT CCCGTGAGTT 000640 000641 TTGCCACAGC CTGGAGGTGG TTTCTGCCTG GGCTGCCAGT AGAGCTGGCA AGTCCAGGAG TCACAACCCT TGTCCCTCTC 000720 000721 CTGCCAATGT GGGTGGGCCC ACTGAGGCCT CAGTTACAGC TACATCAGAG CGGACACCAC GTCCTGGTTC CACCCAGCTG 000800 000801 GCGGTCAAGG GCCCCTCTGT CCAGACAGGA GAGAAGCAGG GAGTTTGGAA AGCAGAGAGC AAGAGGTGGC TGGTCTCAGC 000880 000881 CCTGTGACCT GGGCCAGGCC TAGGACGCCC CTGAGCCTCA GTGTTCTGTC TGGACGAGCT GCCCTCCTGC CCCCACCAAG 000960 000961 CCCTGATGTC AAGCCCTCTC CCTGCAGGGA CTGTGAGAGT GTCTGCTTCA TCGGCCGGCC GTGGCGTGTC GTGGATGGCC 001040 001041 ACCTGAACCT TCCTGTATGC AAGGGTATGA TGGAGGCCAT GCTGTACCAC ATCATGACCA GGCCTGGCAT CCCCGAGAGC 001120 001121 TCCCTGCTGC GCCACTACCA GGGGGTCCTG CAGCCCGTCG CCGTGCTGGA GTTGCTCCAG GTGTGGGGCC TTCCTGGGTT 001200 001201 CAGCAGGGTG TGGAGGCGGC TGGGTGCACT CAGTGGCCCG GCTGTGATGT TCAGGCCCCA GGCAACATGC AGTACCACCA 001280 001281 TACTGCTTGC CTGCACCTCC TCCCCCAGCT TGTCCTGGGC TCCTGCCTCT CAGGCTGTCC CTCAGTGTCC TTCACCAGCT 001360 001361 CCATGCTGCT GACCAGGCTG GAAGATGGGG TGCCCGGGGT GCTTGTCTCT GATGCTTTCT CTGTGCCAGG GGTCACTAAC 001440 001441 TCATGAGTCC GCCGGGCCCC ACGGGTCAAG CAGCTGCCCC CTGGTGCAGC TGCTTCCTGC TTGGCTGACT CCCATGTGTG 001520 001521 CCTGGGGCCT CCAGCTCCTC TGGCAGCTAG GAGCTTGAAG TTGAGTGTCA AATTCCCCAT GAGCCAAACA AAACCCCACC 001600 001601 TGGAAGCCAG TCTTGGCTCA CAGGAAGCTG GGATTTATCC CGCGCTGCAG GCCTCTCCTC CACAAATGAG ATTCAGCGTG 001680 001681 GTGGCTCCAG CCAGCGCTGT ACACGTGCTG CTCAGGCAGC TGCCTCTCCC ACCAGGGCCT TTGCCTGAAC CCTCCTGGTA 001760 001761 CATCCCCATC TGCCTCATGC CCAGTTCAGG TGCCCCCTGC TCTGGGAAGT GGCTCcctgg tacagagggg gcattccata 001840 001841 aatgcttgaa gaataaatca aCAAGCAGGC GAGGGCAGTG CCGCTGTAAC CTGTGTGTCT GGTGTCTCCA GGGCCTGGAG 001920 001921 TCCCTCGGCT GCATCCGGAA GCGCTGGCTG AGAAAGCCAA GGCCTGTCTC GCTCTTCTCT ACACCCGTGG TGGAAGAGGT 002000 002001 GGAAGTGCCC TCCAGCCTGG ACGAGAGCCC CATGGCTTTC TATGAGCCCA CCTTGGACTG TACCCTCCGG CTGGGCCGTG 002080 002081 TGTTCCCCCA CGAGGTCAAC TGGAACAAGT GGATCCACCT CTAGGACCCC TGTGGGCGTC CCCTCCCTCC CAGCCACCGC 002160 002161 CTGCCACACC ACTCCTGCCT GGTGCTCGGC AGACCCCACT GTGCCCTGGC CTTGGGTCTG CCGAGCCTCC TGCAGCAGGG 002240 002241 GACGGGTGCT TTGGCCAGAG TCACAGACTG ACACGTTTCC CACTGTACTG GAACTCTGGA AAGAGGGGCT CCCCGACCTG 002320 002321 CCCATCCCCC AGGCTCTTCT GGGCCTTCCC CTTGGGAACT GGCCTCATCA CACTGGGAGT TGGTGCTTCT TGTCTCTGGG 002400 002401 TCTCCAGAGT TTGCCCCGCC TGTGCACACC TCACATTCCA GACTCTAGCC ATCTCGGCAG GATCTCCTGG CTCCTTGAGT 002480 002481 GCCCAGGTGC CACCAAGAGG AAGGGCCTTG TGGGATACAC CTTGCAGAAT AGGGATCGGT GTGCCCCGCT GCGAGGGGCC 002560 002561 CCCCATGGGG GCTGTGGCCC CTCCGCAGGC AGGACATCCC AACCCCTGGC TGGGACTGAA CCACCCAGAG CGGAGCGGCT 002640 002641 CCCTTTTCAG CCTTGTGAGT CACCTGGCAG GCCCCAGCTG GGCTGGCTGT CCGTGTCCCT CAGCCTGGCT GGTGATTCCT 002720 002721 TGCAGGCCAG AAATGAAGAG TCCCTGTAGG TTTTGGTTTT GTTTGTTTTA TTTTGTTCTT TCACCTTTTT TCCTCATT |
Predicted Small Protein
Name | NONHSAT141455_smProtein_599:886 |
Length | 96 |
Molecular weight | 10034.1032 |
Aromaticity | 0.0526315789474 |
Instability index | 62.0652631579 |
Isoelectric point | 10.5064086914 |
Runs | 15 |
Runs residual | 0.0288437629507 |
Runs probability | 0.0408879467703 |
Amino acid sequence | MAWSRASGSRSREFCHSLEVVSAWAASRAGKSRSHNPCPSPANVGGPTEASVTATSERTP RPGSTQLAVKGPSVQTGEKQGVWKAESKRWLVSAL |
Secondary structure | LLEEELLLLLLHHHHHHHLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEEEEEELLLLLL LLLLEEEEEELLLLLLLLLLEEEEEELEEEELLLL |
PRMN | - |
PiMo | - |