NONHSAT141623
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141623 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1456 nt |
Genomic location |
chr16+:29720526..29722716 |
Exon number |
2 |
Exons |
29720526..29720776,29721512..29722716 |
Genome context |
|
Sequence |
000001 ATTTGTGGTC TCCTCTCTTG GCTTTGGAGC CCCCCTCCCT CTGTCTCTGT ACGGGGGTGC CTTCTTCTTT TCTTCTTCTC 000080
000081 CCTTCTTTCT TGCCTATTAA ACTCTCCACT TCTTAATACC ACTACACGTG TATCTGTGTC ATTTTATCCA ATTTGCATGA 000160 000161 GACAAGAGCC CTGGTGCCCC TCCACTCATC AGAGCCGTAT CATTTTGGTG CATGGGCCAG GAAAATCCAA AGTACAGCCT 000240 000241 TCGTTGGAGT GGGAGACCTT GCCATCATGC GAGGCTGGGA AAACTTCTGA GGTAACTGAG AATTTCTGGT CAGGGCACAC 000320 000321 TCTGGCATGA TTCAAGGGCC TCTGGACCGG ACGCAGCCTC CGACAGCCGG GTGTTGGCAG AGAATCCTCA ACTATCCTGT 000400 000401 GGCCAAATTT TCTTTCTGTC TCTATCCATG GTCTCTTACC CTCTCTGTGT GTCTAATGTG CAGGGATCTT TACAGTTCAG 000480 000481 GGAAACAGGT CTGCTAGAAG AGATGGTGAA TCACGGCAGC CAGTAACTCA ATAAACGTTT CTCTATGGTT TCTCTGGTGA 000560 000561 GCACGTGGTA TTTCTAAGCC ACCTAGTGGC AATAAAAATC CTCTTCATGA GACACATTGC TGGTTCTCTA CGGTACATTG 000640 000641 CAGCTTCGCA ATTTTTCTAT TTTGCGCTTT TTTACTGCTA TTTCTGTGAA CGGGAAGGCT CTGCTTTTAA CAGGAGTCAA 000720 000721 ATGTCTTCTG CAGCCAGATT TTAGTCCTAA TATTGTCCCA TCAGTAGAAA TTGGCCATTT GCTTCCTACG TTCTTTTAAG 000800 000801 GCACCTATTC TGTCTCCAGT TAAGATAGTA CTTAATTAGT AGGGAAATTT TAAGTCTGGA AGTTAACCGG AACCATTTTC 000880 000881 CTATGGGTAA ATGTTTTATC ATAGGCCATA ATAGCAGGAT TTAGAGTTCA ATCTAGCATG CCCCCTGCCT TAAAGGGGTC 000960 000961 TTGCCCAATT ACATGATTTT TCTTGAAATC CATTTTTTTA GGAAGGCACA AAGGCCACAC AAGTCTGGAA GGTCAAAGAG 001040 001041 AAATAAAAGG CAGAGGACTA AGGCTGCTTG GGGAAAGCGT GACTAAGGCT CAAAAGTTGA GTTCCTCTGA TGTCATGGCT 001120 001121 TGGAGGGTCA CGCCTGCAGT CACAGGTCAC TGGTGGCCCA TTTAAATAGG TGCTGGGAAT CCAGAAACCA CGGAGAGAAG 001200 001201 ATAGTTGGGG GAACTCCCCC TACTGCTTTT GTCTCCAACC TGGATCACAT ACCAAAAGGA AGGAGACTAA AAGAACGCTT 001280 001281 TTATTCTCAC TTCTCTTTCT AGATGGGAAT TAGATCATGT ATAACATGCA CTGCCCTCGA GTGTATTTTA AAGCACTGGG 001360 001361 ACTCCTTCAA CTCTGAAACT TTGAAGAAAA AGTGGCTTAT TTTCTTTTAC ACAAGGGCAT GGCGTATTTG TTTTTGTTTT 001440 001441 TTTTTTGTTT TTTTTG |
Predicted Small Protein
Name | NONHSAT141623_smProtein_326:496 |
Length | 57 |
Molecular weight | 6387.5 |
Aromaticity | 0.125 |
Instability index | 40.6839285714 |
Isoelectric point | 8.73468017578 |
Runs | 10 |
Runs residual | 0.0252732240437 |
Runs probability | 0.060687157746 |
Amino acid sequence | MIQGPLDRTQPPTAGCWQRILNYPVAKFSFCLYPWSLTLSVCLMCRDLYSSGKQVC |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHLLLLLEEEEEEELLLLEEEEEEEEHHHHLLLLEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii |