NONHSAT141860
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141860 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5489 nt |
Genomic location |
chr16-:31094758..31100949 |
Exon number |
2 |
Exons |
31094758..31096581,31097285..31100949 |
Genome context |
|
Sequence |
000001 ggcctcccaa agtgctggga ttacaggcgt gagccaccat gcccggccAG CATCTATAAT ATATGCTAAA CCTTACCCAC 000080
000081 AGCTGCCTCT GTCTTGGGGT CAGGGTTCTT GAATGGTCTG GGCCAGCCTG AGTTAGGAGT GGGAAGAGGA AGAGGAGGCA 000160 000161 CGCGCCAAAG TGTTCTTCCC GCCTGACCGA GTCCTCTGCG cctatgagga aggtgggcac cgctgtcacc ctgtttccca 000240 000241 ggaagccagc aggcccaggg agatactggg atttgccaaa ggctcacagc gagcaagcag cagTGGGTGC TGGCTCCTCA 000320 000321 CCACTCAGCC TGGCACACAC TGTCTCTGAG CAGACCTGGG AGAAGGCATG TGAAACCCAC CTAGCCCTGG CTGGAAGAGA 000400 000401 AGTGGGGGAG TGGAAATGAA AAGTGGGGAC TGGGAGGAGC TGCCCACGTG CCCTCCATGG TTCCAGGATG GCACTTTCAT 000480 000481 GCTGGGAGTG AGCTTGCCCT GTGCCAGGCT GTCATTGAGA CGTTTTCCAT TCAACAACTG TTTCTCAGAC Aaggcacagg 000560 000561 caggttagct ctcccaggcc actcaagtag taaggaaaca gatttaaacc cagacaattt ggctccaCGG ctaaggccca 000640 000641 gagaggggtg gtgacaagcc tagggtcaca cagccacagc cccagagcta ggaACTGCTG GCTAGGGCAA GCAGACAGCT 000720 000721 GAATCCTAGC CAACTGGAGG TGGAGCAGAG GTGGAGCCAG GGAGACCCAG GTGGCCTCTC TCAGAGTGGA GCACAGGTGG 000800 000801 CAGAGTGGCC CGGGGCAGCA TGAAGTGGTG CTGGGGCCCA GTGCTGCTCA TCGCGGGTGC CACAGTCCTC ATGGAGGGTA 000880 000881 AGCCGCCATG TGCTGGGGTA TGGGTGTGGC CTGGTGGGGG CTCAGGGGCC ATCTCTGCCC CAGCAGTCCC TGCTTCTTGG 000960 000961 TGGGGGGACC GCCTGTGGGC GACAGTCCAC CAGTGGGGAT GTAACTCCGT AGGACTCTGT GGGGTGGTAT ATGTGGCCAC 001040 001041 CTGTGTCAAC ATGGATGAGA TTTTCTCGGG CCAGCTGCAG TTTGCGTTGG CGGGGCCTGT GGTCTTGTGT GTGTGTGAGG 001120 001121 TGCTGCCTGC GTGTGTCCTG TGCCTGCCTC CCCCTCGACT TCCACAATGA CGTCAGGCAA ACTCTGGGCT CCTCTGGCCT 001200 001201 CAGTTTCCCT TTCTTTTCAT CCATCCTCTG GGCAGCCTGG CTCAGCTGTC TCATGGGGTG CCTGTGTGCC TGTGAGGGGC 001280 001281 GGTGGGCAGG GGCCCTCTCT CTGGCGGGCT CTCAGACAGT TTCTGGGAAG GTGGGGAAGA CTGAGTCTCT AGACCAGGGT 001360 001361 GAGGTAAGTC TCCATTTCTT GGGGCCCTCC CCACTTGGAA ATGATGCAGG CCTCTAATCC TTCCTCTTAG GCCTCTGCTG 001440 001441 CTAAGAGGAC AATTAAGCTA ATGCTCTCTA CACACACAGG CCGCCTGGCT GACTCAGTGG CGGGGGCAGG AGTTGGGGGT 001520 001521 TCTGAAGCCT GGAGGAGGGC TGGCCTACTC CCAAGCTGAA CCCCAAGCCC CAGAGTGCTG AGCACAGCTG AAGGAGAATT 001600 001601 AATTACTGAG TGTGCACACT GAATAGGTTC CAATAAAAGC TGTCTCGGCC TCATATAAAT ATTTTCATTC TGGGAGGGGC 001680 001681 TGGTAAGGTA ATCAGAGTCA CAGGCAAGGA CCCTGGGCCC GCCCCCCAGC CCATCCCCTC TCCTCCCCAA AGCTAGGCAG 001760 001761 GCCTGGAGTC CCTGCATCTT ACCTGTGTCT CTCTCTTCCC AGGTCTTCAA GCCGCTCAGC GTGGTAAGGT CTGGGGACAC 001840 001841 GGGGCCTAGG TCTTACTTGG GTCTGGGTTG GGACTGGGGT GAGGTCAGGA CAGGTATCTG CTGTCAGTGT GACTAACTCC 001920 001921 TTTCCACAGC CTGTGGACAG CGTGGCCCCG GCCCCCCCAA GCCTCAGGAG GGCAACACAG TCCCTGGCGA GTGGCCCTGG 002000 002001 CAGGCCAGTG TGAGGAGGCA AGGAGCCCAC ATCTGCAGCG GCTCCCTGGT GGCAGACACC TGGGTCCTCA CTGCTGCCCA 002080 002081 CTGCTTTGAA AAGTAAGTCA TGGCTGGGGT CAGGCAGGGT CTCCGGCTCT GGGGAGTGGA CAATTTGTCT CAAGCCCCAC 002160 002161 AAGGCTAGTC CCTGCCTCTA GAGTaataat aaagaaccat ttactgagaa tctgccatgt actgggtaca tattgtcaag 002240 002241 ttaattgtaa caaccacctt tcatggtaga agatttacaa atcagaaaac tcaggttgca agggaatgac ctcgcttaaa 002320 002321 gtcacaGACT GAggccgggc acagtagctc acgcttgtaa tcccagccct ttgggaggcc acggagggag gatcgcttga 002400 002401 gcccaagagt tcaagactag cctgtgcaac atagcaagac catgtctcta caaaaactgt aaaattagcc aggcatggtg 002480 002481 gtgcacgcct gtagtcccag ctactcacga ggctgaggtg ggaggatcgc ttgagcctgg gaggtcaagg cttgtagtga 002560 002561 gtcatggtca tgccactgca ctgcagcctg ggcgacagga cgagacccta cctcaaaaag aaaaaGCCGT GGAGTGCTCT 002640 002641 CTGCTATCTT CCACCTACCT GTGGGGTCTC CCATGGTGTC ACTGTCTACC CTTGCACTCA GCAGCCTGGA CCTTGTCCTT 002720 002721 CCCCTTCCAG GGCAGCAGCA ACAGAACTGA ATTCCTGGTC AGTGGTCCTG GGTTCTCTGC AGCGTGAGGG ACTCAGCCCT 002800 002801 GGGGCCGAAG AGGTGGGGGT GGCTGCCCTG CAGTTGCCCA GGGCCTATAA CCACTACAGC CAGGGCTCAG ACCTGGCCCT 002880 002881 GCTGCAGCTC GCCCACCCCA CGACCCACAC ACCCCTCTGC CTGCCCCAGC CCGCCCATCG CTTCCCCTTT GGAGCCTCCT 002960 002961 GCTGGGCCAC TGGCTGGGAT CAGGACACCA GTGATGGTAA GTGCTGGCCC AGACTGAAGC TCGGAGAGGC ACTCTGCTTG 003040 003041 CCCAGCGTCA CAGTCTCAGC TCCCAACTGT CCTGGCTTCC AGTCTCCCTT GCTTCCCAGA TCCCAGACTC TAGCCCCAGC 003120 003121 CCCGTCTCTT TCACCAGCTC CTGGGACCCT ACGCAATCTG CGCCTGCGTC TCATCAGTCG CCCCACATGT AACTGTATCT 003200 003201 ACAACCAGCT GCACCAGCGA CACCTGTCCA ACCCGGCCCG GCCTGGGATG CTATGTGGGG GCCCCCAGCC TGGGGTGCAG 003280 003281 GGCCCCTGTC AGGTCTGATA GGGAGAAGAG AAGGAGCAGA AGGGGAGGGG CCTAACCCTG GGCTGGGGGT TGGACTCACA 003360 003361 GGACTGGGGG AAAGACCTGC AATCAGAGGG TGTCTGCCAT AGCTGGGCTC AGGCATCTGT CCTTGGCTTT GTTGCCTGGC 003440 003441 TCCAGGGAGA TTCCGGGGGC CCTGTGCTGT GCCTCGAGCC TGACGGACAC TGGGTTCAGG CTGGCATCAT CAGCTTTGCA 003520 003521 TCAAGCTGTG CCCAGGAGGA CGCTCCTGTG CTGCTGACCA ACACAGCTGC TCACAGTTCC TGGCTGCAGG CTCGAGTTCA 003600 003601 GGGGGCAGCT TTCCTGGCCC AGAGCCCAGA GACCCCGGAG ATGAGTGATG AGGACAGCTG TGTAGCCTGT GGATCCTTGA 003680 003681 GGACAGCAGG TCCCCAGGCA GGAGCACCCT CCCCATGGCC CTGGGAGGCC AGGCTGATGC ACCAGGGACA GCTGGCCTGT 003760 003761 GGCGGAGCCC TGGTGTCAGA GGAGGCGGTG CTAACTGCTG CCCACTGCTT CATTGGGTGA GTCTTGGATC CCTCTCTGCT 003840 003841 GTGCCCCCTG CCCCTGCCGG CAGCCCTGTC ACCTGGTGCC GTCCACACTG CCTCTGCACA GGCGCCAGGC CCCAGAGGAA 003920 003921 TGGAGCGTAG GGCTGGGGAC CAGACCGGAG GAGTGGGGCC TGAAGCAGCT CATCCTGCAT GGAGCCTACA CCCACCCTGA 004000 004001 GGGGGGCTAC GACATGGCCC TCCTGCTGCT GGCCCAGCCT GTGACACTGG GAGCCAGCCT GCGGCCCCTC TGCCTGCCCT 004080 004081 ATCCTGACCA CCACCTGCCT GATGGGGAGC GTGGCTGGGT TCTGGGACGG GCCCGCCCAG GAGCAGGTAG GTGGGCACAG 004160 004161 GGCCAGGGCT GCTGTCCATC CAACCTGCAG GCCGGGGCAG CCAGCTTTCC CTTGCTCCAC AGGCATCAGC TCCCTCCAGA 004240 004241 CAGTGCCCGT GACCCTCCTG GGGCCTAGGG CCTGCAGCCG GCTGCATGCA GCTCCTGGGG GTGATGGCAG CCCTATTCTG 004320 004321 CCGGGGATGG TGTGTACCAG TGCTGTGGGT GAGCTGCCCA GCTGTGAGGT GAGCCCCAGG CCCCCACACC TTACCTAACA 004400 004401 GGCCCCTGGC ATCCCCTCAC CCAATAGCTC AAGAACGGAC CTTCCAGGCT TGGCCTCTGG ACCCACCTCC CACCTGAAAC 004480 004481 TAAGCCTTTT TGCCAATTAG CCCCCAAACA GCCAGAGGTT CCCTAGCCTG CTCTACCGTC CTGCACAGCT GCCTATAAAA 004560 004561 AGTCACCCAG TGTCACCTGA CCCCTGACAG GGCCTGTCTG GGGCACCACT GGTGCATGAG GTGAGGGGCA CATGGTTCCT 004640 004641 GGCCGGGCTG CACAGCTTCG GAGATGCTTG CCAAGGCCCC GCCAGGCCGG CGGTCTTCAC CGCGCTCCCT GCCTATGAGG 004720 004721 ACTGGGTCAG CAGTTTGGAC TGGCAGGTCT ACTTCGCCGA GGAACCAGAG CCCGAGGCTG AGCCTGGAAG CTGCCTGGCC 004800 004801 AACATAAGTA TGTGGCCCCG GGGCCTCCTG CCAAACCCTG CCTCTCCAGG ACCCTTCTCT CTCCAGTGAG AACGTGCCGT 004880 004881 TCTAACCCAC TCCAGCTGCC TTGGGTAGGG tggagcaaca ggcagaccca tttgattcag attctggttc tttgtcatcg 004960 004961 tgtgacttgg agcaggctgc tcaaccgctt tgagcctcag tattctcatc tgtCATGGCG GCCAAGACAG ACCCTGTTCC 005040 005041 TTCGAGGAAT GGGGAGGGAG GGAGGGACCA AAGCCGTGAG GATGAGGACA ACTCCACCCT CCTTCCTTCC CCACAGGCCA 005120 005121 ACCAACCAGC TGCTGACAGG GGACCTGGCC ATTCTCAGGA CAAGAGAATG CAGGCAGGCA AATGGCATTA CTGCCCCTGT 005200 005201 CCTCCCCACC CTGTCATGTG TGATTCCAGG CACCAGGGCA GGCCCAGAAG CCCAGCAGCT GTGGGAAGGA ACCTGCCTGG 005280 005281 GGCCACAGGT GCCCACTCCC CACCCTGCAG GACAGGGGTG TCTGTGGACA CTCCCACACC CAACTCTGCT ACCAAGCAGG 005360 005361 CGTCTCAGCT TTCCTCCTCC TTTACCCTTT CAGATACAAT CACGCCAGCC ACGTTGTTTT GAAAATTTCT TTTTTTGGGG 005440 005441 GGCAGCAGTT TTCCTTTTTT TAAACTTAAA TAAATTGTTA CAAAATAGA |
Predicted Small Protein
Name | NONHSAT141860_smProtein_4013:4267 |
Length | 85 |
Molecular weight | 8877.1099 |
Aromaticity | 0.047619047619 |
Instability index | 49.219047619 |
Isoelectric point | 8.68499755859 |
Runs | 11 |
Runs residual | 0.0030330603579 |
Runs probability | 0.0238794944678 |
Amino acid sequence | MALLLLAQPVTLGASLRPLCLPYPDHHLPDGERGWVLGRARPGAGRWAQGQGCCPSNLQA GAASFPLLHRHQLPPDSARDPPGA |
Secondary structure | LHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLHHHH HHLLLLHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |