NONHSAT141904

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT141904

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

9649 nt

Genomic location

chr16-:31460668..31470316

Exon number

1

Exons

31460668..31470316

Genome context

Sequence
000001 AGAAGAGGGT TAAACCTACC GAGAACGTTC GCTGCCGCTT CCTAGAGTGA CGGGCTTGTG GAATTTTCCG TTTCCGGAGC 000080
000081 TGGACCCCGG TGTCCCGAGT GTCCTCCGCT CTGGACGTGC TCGTGAGCTC AGGAGCTGGC ATCTAGGAAA CGGGGAGTTC 000160
000161 TTCACTCGCA GCGCAGTCGG CCGCGCCAGA AGAGGCGAGG GAGAATCCGG ACGGGGCGGG GCGGCGGGGG AGCGGGACAT 000240
000241 TCGCGTCCCG GGGAGCCCCC AGGTCACCCC TGGATTGCGA GGTGGCTCCG CCTGAGCAGC CCTTCCTGGT GTGGTCGGGG 000320
000321 CAGCTGCCCG CCCGGAAAAT GGTCAGGCTC TAGCCCTGGG GAGGAAGAAG CCTTTGCCAA GAGCAACCGT CTACAAGCCC 000400
000401 CAAAACCTGC GAGTGCCGGA AATGTGGACT GACCACAGCC TGCCTCCCCG GCTTCATTCA CCACCAAGGC AGCCCCTCTG 000480
000481 GTGACAAGCC TTACCGTTGT CCGGGTTATG GCAGAAGCTT CCGATGTGGC TCTGATCTGG TTAAGCACCA CTGGGTACAC 000560
000561 ACCGGTGAAA AGCCGTACTC CTGCCCCGAG TGTGACCATC GCTTCGGCCC TATGCCTGTG CCTAGTGTGG TAAGACTTTC 000640
000641 AGCGTCAGCT CCAACCTGAT CCAGCACCAG CGCGCTCACA CCGCTAAAAG CCTTACCGCT GAGGGGACTG CGGCAAGAGT 000720
000721 CTCAGCCTTG GCTCCACCCT GTTGCAGCAC CTGCGCTCCA CATGGGTGAG AAGGCCTCTA AGTGCCTTGT TTGTAGTAAG 000800
000801 AGTTTTGTGC ACAGTTGGAA TCTGCTGCGG CACCAGCACA GTCACAAAGT CCGGAAACCT GATGCTTGGT GGTGAGTGTG 000880
000881 GCCAGACCTT CGGCCACAGC TCCCACCTGC CCATCCACTA GGCGGCCCAC AGCAGCACCC CTGCGTCTGC CTGCAGTGTG 000960
000961 GCAGGGCCCT AGCGCAAAGC TCCAACCTGG GCCAGCACCA GCGGACGCAC TAGGGCGGCA GCCTCTGCAA ATAGCCCTGG 001040
001041 CTTCAATTTT AGCTGAAACT TCAGCTCTGA CTTTGGTTCG GACTTCAAGG AAATGGAAGG AACCAGGATC TCTAAGCAGA 001120
001121 CCCCCTTCTG CTCCCTTAGG GCTGTTGATT TTAGAGCTAA TGATGGGATT CGGTTGGGGC GAGGGGGTCT CCACATCTTT 001200
001201 TTGCCCAACC CTTTGCTAAG TCAAGGAACC CCAGTCTGgg ctgggcatgg tggctcatgc ctgtaatccc agcactttgg 001280
001281 gaggccaagg ttagcggatc actggaggcc aggagttcga gaccagcctg gccaacatat tgaaaccctg tctctactaa 001360
001361 aaaaaaaatg ctaggcgtgt tggctctcgc ctgtaatccc agctactcgg gaggctgagg caggagactc acttgaaccc 001440
001441 cgggaggcgg aggctgcagt gagcgaagat cgtgccactg cactccagcc tgggcgacag agagtgtctc aaaaaaataa 001520
001521 caaatttaaa aaTTGTTTTT AACAAAGGAG CCCCagtctg gaagaatcag aacactagat ctgtgatcac tgccttcaaa 001600
001601 gagcccagtc agctgagagg gcttaggttt gttctttgaa gttacaaaga cagaacgtcg accagctgaa gggagagttT 001680
001681 TGGAATGGCG GGAGCTATCC AGCGTGGACC CAGCTGCCTG CAGATCTGGC AGTAGCTGAC ACAGTCCCTT CACAGGCCTA 001760
001761 GGGAGTGATG GGGTTAATCA CACCTAGAAC AACAGCTACC TCTTCCCAGA GGAATGGGAC CAGAAATCAG GCAAGCCCCT 001840
001841 GTGAGGAGTT CCATGGCAGC GCGCAGGCGG GGCATTCCTA ACCTCCAGAG GGAACCATGA GGGATCCTGT GTTCTGGCAG 001920
001921 ATGGGCCAGA GAATTTGAAC TTGGGACCAT TGTGTGAGCC CTGGGTGTGT GAGCCCTTCA AAAGTCCTCT CAGCACGTGA 002000
002001 GAACTATCAT TATGGATGAT GCTAGGGTGG TGGGGGCCCC AGAACAGACC TGTATGTTGA GTTCAGGGGT TGCTTTGTTG 002080
002081 CATTTCTGGG CAGGGGCAAG AGGCCCAGGG TTTGTCATCT GCCCCTTCCC CTGCCTTATC CCCTTCCCTT CCAAGTTCCC 002160
002161 CAGGCTCCTT TTCTGCCAGT CTGTCAAGAG AGGGAAGAGT GGCGAAGAGT CCTTTGTGCC TGGACATTGG GGACTGAACA 002240
002241 TGGCCCTTTT GCCTGGGCAT TGCCCAAACA TATATTTCTA CTGGCATAAC TTTGTGTATG TGAGAGCCAG GGGTAGGCTT 002320
002321 CCCAAAGCAC CTGCCTGTGC TCAGAGTAGA CACCAAGCTC TGAGGCCCTT CCCTTCCCTG CTGGGGGAGG GAGTTGTCTG 002400
002401 TTTCAAGGAC CTAATGTCCA CCCCTTGTGG GACAGTCCTA CCATCAGTCC AGGCATCTGG TCTGCTGCCC CCAAATTTTA 002480
002481 CCAtcttttt tttttttttt tttttttttt tttgagacgg agtctcactc tgttgcccag gctggagtgc agtggcacga 002560
002561 tctcagctca ctgcaacctc cgcctcctgg gttaaagtga ttctcctgcc tcagcctccc gagtagctgg gaccacaggc 002640
002641 ttgcgccacg atgccagcca gtgtttgtat ttttagtaga gggtttcacc aaccctctac taaagaccag cctctagttg 002720
002721 gtcaggctgg tctcgaactc ctgacctcaa gtgatccatc cgcctcagcc ccccaaagtg ctaggattac aggcatgagc 002800
002801 caccacgccc ggTAATTTTG CCATCTTTTA TCAGGCTTTC TGTGTCGAGG ACGCTACCCA CATAGAGTAG AACCTAAAGG 002880
002881 GAAGGGATGT GAAGTGACCT CACCCTCAGC TTCTAGCTCA TGGTGTCAAG GCTtgtgtga tcttagacac gtctgcctct 002960
002961 tctgagcctg tttcttcatc tgtaaaacag ggatGGGAGG TTGTGGTAAA GATTCCACAG CAACACTGCA CACGCATGAA 003040
003041 GTACCTGGGC CAGGGATGAC TCGGCAGACC TCAGTTTCCC TCTGCCTCCT GCCTAGAGCT GTTAGCAAGC ATCCATCATG 003120
003121 CGGCTCACAC AAGAGCTCCC CCCGGAGGTT ACAGAAATGA AGGCAGCAGC CCCAGTCCTT GGGTAGCCTG TTTCCCCTTG 003200
003201 AAGGAAACAG ACTCAATATC AGCAACACAG AGTGAATGAC GCCAGGGTGG CGAACGGGCC TTTCCTGGAG CAAATGCGGG 003280
003281 AGGCTTCATG GAGATGACGT GTAATGAACA GCACTCATCT CAGGCTGGGA GCAGCACATG CCCCCGGCAG GGAGTCAGTG 003360
003361 ATGAGGTATG GGGTTCTTGA CATCTTCCTC ACCCAGGACC CTTCAGAGAG TACGAGCCAG GGTTTGAGTG AAGGGCCTGA 003440
003441 GCCCAGCACA TGCATGGTAG GCACTCAAAG AATAATTGTC ATGATCAGGT CCTTTTTACA CTGCTTACTA GTGGCCTTTA 003520
003521 AGCCTCAGTT TCCTCACAGT TGCCTTGAGT GAGTGTCAAG TGTTGTAGAC CTCTGCAAAA TTCATAACTG CTTAAGAATA 003600
003601 TTAGGTATGG GTAGAGTAGG CTTGGAAGGA GGATTGGTTT GCAGAATCCC TTTCAGAGAC CTGTAATCTA ATTTCTCACA 003680
003681 TTAGGGCTAA TACTCCTGGG ACCCCTCTCC TCTCCAATTG CATAAAACAG GTTCTGACCA GAACAGCGAG GCAGGCCAGA 003760
003761 CCTCAGAAGC AGAGGGACGG GCTTAATCTA ACAGGAGTTT ATCCCATGTC CTGCATCCAC TGTACCCTGT GCTGGGTTTA 003840
003841 GAAGTAGCTT CACTGTCCAA GCTTGTGACC CAGTGCCCAA GCCCGAGATG GGAAACACAT TTGTTTTGGC tgtgtgtgtg 003920
003921 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtTTTCAAA CAAGCCAAGA tttttacttt ttgagttcca ttttgttgcc 004000
004001 caggctggtc tctgaaactt ccaggctcaa gcaatccccc tgcctcagcc tcccaaaatg ctggaattac aggtgtgagc 004080
004081 taccatgccc atttatttat ttatttattt atttatttat ttttgagaca gaatctcact ctgtcatcca ggctggagtg 004160
004161 cagtggtgca attgtggctc actgtagcct caacctcctg ggctcaagtg atcctcccac cttaacctcc caaggagctg 004240
004241 ggactacagg catacaccac cacacctggc taattttttg atttttaaaa aatgttttgt agagacgggg tctcactgtg 004320
004321 ttgcccaggc tggtcttgaa ctcctgagtt caagtgttcc tctggtctca gcctcccaaa atgctgggat tacagatgtg 004400
004401 agccaccTAA CCTGGTCTTT TTATTTTTTT AAAGAgccaa catttaaata aggagatttc acatcacagt cgatttctgg 004480
004481 ggcttggttt gttgttgttt tttttgtttt tttttttttt taattgagac aggatcttgc caggttgcag actggtcttg 004560
004561 aactcctagg ctcaaatgat cccctcctgg ccgggcacgg tggctcacgc ctgtaatccc agcactttgg gaggcctagg 004640
004641 tgggcggatc acgaggtcag gagatcgaga ccttcctggc taacaaggtg aaatcctgtc tctactaaaa atacaaaaaa 004720
004721 ttagctggaa atggtggcag gcgcctatag ttccagctac tcaagaggct gaggcaagag aatggcatga acccaggagg 004800
004801 cagagcttgc agtgggcgga gatcctgtca ctgcaatcca gcctgggtga cagagcaaga ctccgtttca aaaaaaaaaa 004880
004881 gaaaagatcc cctgccccgg cccttccctc ccccacccac ctcggcttcc gaaagtggta ggattacagg cgtcagtcac 004960
004961 cacacccggc ctgctttatt atttatatca gaagatgctg caacattgga tttttatggc agcagttcgt tgagtagtgg 005040
005041 ctgtcctgga cataggaaca gggacactcc ctcttgcatc cctgactcag cacgtttcat atgtgttact tgcctgtccc 005120
005121 ctgcagaaaa gtacttgagg ttacagtctc CATCCCACCC CACTGTGGGT GAGAAGGACC TTTCCATGCA GTGAAGGCAC 005200
005201 TTTTCCCCTT TCCTTCACCC CTTCCTGTTC CCTTCTCTGC CGTTTTCCTT CTTCTCCCCC AGAACTCCTC TGTGAAATAC 005280
005281 CTGGCCTCCT TCCCTGAGCC TCCCTGTCTC CCTGCCACCC CATCTCCACT CCGTGCTATG ACATCACCCC GTAATTTGAA 005360
005361 GCTCCTTTCC CTATCTGAAG GGAGGCAGAG ACAGAGTGCA CAGGCTCAAC TAGGCAAGGC AGACCCTTGC ATGCCTGGGT 005440
005441 CAGAGGTCAG GGTCTCTGGC ACACATTCCT CCCAGAGCAA CTGTAGGAAG CAAGCCAGTA CAGAGGTACT CTAAGCGCTA 005520
005521 GACAGGACGG GGTGGGAGTC GGTAACATCG TCTCCTCTGG GCTGGCCCTG CTTCTGCTTA GCTCTGGGCA TAAGACTGAC 005600
005601 TCCAGTACAG TCACAGTTAT GTCTCTGAGC TCACCCAGTC CTGGGTTCCA GGTTCCCAGC TCTGAGCCTG GCGAGACACA 005680
005681 CACAGGCTGG TGCTGTGGGA TGTCTTggta cggtggctca cgcctgtatt cccagcgctt tgggaggccg aggtgggcag 005760
005761 atcacctgag gtcaggagtt cgagaccagg ctgcccaacg tggtgaaacc ctgtctctac caaaaatata aaaattagcc 005840
005841 aggcatggtg gcacgtgcct gtaatcccag ctacttggga ggttgaggca ggaaaattgc ttgaacccag gaggtggagg 005920
005921 tttcagtgag ccaagatcgt gccactgcac cccagtttgg atgaaagagt gagactccgt ttcaaaaaaa aaacaaaaaa 006000
006001 aacaaaacca aaaaaTAAAA AAACACATCA GCTTGACATT TTGGAGGCAT TCCCAGACTC AGGGTTAGTC AGCAGATTAG 006080
006081 CATTTAAAAG AAAGTCTTGT CCCTACAGAT TCCCTGACCT CAGCTACCCA TGAAGGGTGG GAAGAGGAGT CCTTAGCAAG 006160
006161 AAGTCCAGGA AGTTGACAAC CTCCTCAGAC CTGATAGGAC ACTCCTCTCT CCACCCTGCC TCCTGACTGA TTTAATCTCA 006240
006241 GGGGTGTGAG GACCTCTGAG ATAGGCCCCA GGAGTCTCAC CCGCACCACT TATGTCTCAG GGCTAACCAG AGACTCCCTG 006320
006321 AAACAGATCC TAGAGGATTC CCAAGTGATA GGATAAATAG AGAGGTACTG AGACTTCCTG GCGTGGGTGA CCTCTCCCAG 006400
006401 Gctggccaac ctcccccatt cagaaatttg ctgagcacca ggagtgaatg aagtaaagga agcccctagg agttcaagaa 006480
006481 gcagagattt ccaggtccat gcaccaaagc tcatgtgctc aattctcagg aaaggcctca ctcagTTAAA AAATTTTGTA 006560
006561 TCATGAAAGG GTAAATGAAT TAATTAGTGA ATCTGGTTTC TAAGCCAATG GCTTACTAGA AATATTATAG TAAATCAGAA 006640
006641 AAAAAAAAAA AGgcggtggc tcacacctat aatcccagca ctttgagagg ctgaggtgag aggatgcttt gagcccagga 006720
006721 gttcgagact agcctgggca acatagcaaa ccccatctct agaaaaaatt aaaaaaccag ccaggtgtgg tgatgttcac 006800
006801 tgtagtccca gctattcagg aggctgaggc aggaggaccg cttgagccca ggaatttgag actgcagtga gctaggattg 006880
006881 tgccactgca ccccagcctg ggcaacagag tgagaccctg tctctaaaaa aataaTTTTT TTTAAAGATA ATTCTTCAAA 006960
006961 GGAGATCCGC TCTTCCTTTC CTACACCCAT TCCCTTTCCT CCCTTTCCTG AACAATGCTG TCTTACAGCC TCTAGGGGCA 007040
007041 GGCAGAGCCA AAGAGGCCTC TGCCGGGTGT GGGGAGTGAG ACGCAGCAGG CCAGAGCATG TATCAGAGCT CCAGCAGGTG 007120
007121 GGGGAGGGTG TCCACACGAG AAGGTGGCCT GGCTTGGCAT GGCAGAACCT GATAGGATTA GGAAGGCATC AGCCACGGGA 007200
007201 AGGAGATGGC GAGAGAGATA AGAAACTGCT TCCACCAGCT attggtcaaa taagtacaca tttgaaagat aacagccagg 007280
007281 tttctcagtg tcagagaaaa ccgagacaca gctcgggaaa gggagaaaat gtgggtgggg agacccttgt ggtgtcgaat 007360
007361 tggaactgga ggtataggag tagactcagg attttcagaa agtgtttaga tagacataga aattagtatg ggtgtgtata 007440
007441 tgtgtatgtg cacgcagatg tgtgtaaatg tccatatatt ccctagctct ggaaagccct ggagcagtgc catcccaata 007520
007521 acaaaaagct ttttatggtt ttttgagata gggtctctcc ctcacccagg ctggggtgca gtggtgcgac cacagcccac 007600
007601 tgcagcctcg acttcctggg ctcaggtgat cctcctgtgt cagcctccca agtagctggg actacaggca tatgccacca 007680
007681 cacccagcta atttttaatt tttttttttt gtagggacgg gtcttgctac gttgcccagg atggtcctga actcctgggc 007760
007761 tcaagcaatc ctcccacctc agtctcccaa agtgctggga ctacaggtgt aaCAGTTtta aggtaatcag aatcaagaaa 007840
007841 tgattgaggt gatgctctgg aataatgggg actagagagt cgtgacaact aaatgcaatg tgtggtGTGG TAGCATTTTT 007920
007921 CTGGGCTGTA GTCCCTAGAT GGGTAGAGAA GAAAGCCCCG GAGAGGGTGA AGAGGTGGGG ATGTGGAAGA CGTCAGAGAG 008000
008001 AGCACAGGGC AGAGCGCAGA GAACTGCATC CACAGGCCTC GCCATGCCCC CAGCATGGCT GCACCACACC AGCAGATGCC 008080
008081 TTCGCTTCCC AGCAGTGGAC ACAGGTCACT GGATCCTCAC AAATGAGCAG CCAGGAGAAT GTTTGCAGCC TGGAGATTCG 008160
008161 GGGCTTTGTC AGCACCTTGG GAAGGTTTTG TTCTTGGGTT TTGGGTTTTT GGTTTTTGGA TTTTTTTGGT AACAATATCG 008240
008241 CTATATTTAT TCTCCTGCAG TACACTTTTA AATTGCTTCA ACATTTTCCC CTTAAAATAA AAAAGAACAA CAACAAAAAA 008320
008321 ATTCCAAACC TTAGAATTGA AATATTTGGC CTTTTCTCtc tctctttttt tttttttttt ttttttttga gatggaatct 008400
008401 cgctctgtcg cctaggctgg agagcagtgg cgcgatctca gctcactgca acttctacct cctgggatca agcgattctc 008480
008481 ctgccttacc ctcctgagta gctgggacca caggcgcatg ccaccatacc aggctagttt ttttttgttt tgttttgttt 008560
008561 tgttttgttt tgttggtatt tttagtagag acggggtttc accgtgttag ccaggatggt ctcgatctcc tgacctcgtg 008640
008641 atccgcctgc ctcggcctcc caaagtgctg ggattacagg tgtgagccag tgcacctggc cTTGGCCCTT TCTCTTTTTA 008720
008721 TTTCCTCGCA GTTCTCTCCC ttttttaaaa aaaataataa taaattgaat ttataaatag aggcaaggtc ttgttatgtt 008800
008801 gcccaggctg gtctcgaact cctaggctcg agggatcctc ccaccttggc ctctcaaagt gctggattac atgtgtgagc 008880
008881 caccccacct ggccCCAGCT CTCTTAATTG CCAGCACTCC TCTTGGAAGT Ccctcatctt gattacctta tttaaggtca 008960
008961 cctcctcaca ggccctatct tttttttttt tttttttttt tgagagggag tttcgttgct tttgcccagg ctgcagtgca 009040
009041 atggcgtggt ctcggctcac tgcaacatcc atctcctggg ttcaagccat tcgcctgcct cagcctccca agtagctgag 009120
009121 attacagaca tctgccacca cacctggcta attttttgga atttttagta gagacggtgt ttcaccttgt tggccaggct 009200
009201 ggtcttgaac tcctgacctc aggtgatctg cttgccttga cctcccaaag ttcagggatt acaggcgtga ggcaccatgc 009280
009281 ccagccagtc cctgtcttca aatacagtca cactgggggt taaacaatgt ataaatttgg gggcgataca aacattcagt 009360
009361 ccataacacc ccctataccc caaccctagg caaccactaa tctacatctt atctctacag atgacctatt ctggacatgt 009440
009441 catataaatg gaatcataca atgtgtggtc attcgtgtct ggcttctttc atatagcata atgttatcaa ggttcatcca 009520
009521 cactgtagta tctcatttct ttttattagg aataatacag tttcacttta tggattgctg tggtttgaac ctgtccccta 009600
009601 aagttcatgt gttggaaact taacctccaa ttcaactgtt gagaggtgg
[back to top]

Predicted Small Protein

Name NONHSAT141904_smProtein_3887:4186
Length 100
Molecular weight 11257.3047
Aromaticity 0.141414141414
Instability index 44.39
Isoelectric point 6.48907470703
Runs 13
Runs residual 0.00237670825906
Runs probability 0.0267620561739
Amino acid sequence MGNTFVLAVCVCVCVCVCVCVCFQTSQDFYFLSSILLPRLVSETSRLKQSPCLSLPKCWN
YRCELPCPFIYLFIYLFIFETESHSVIQAGVQWCNCGSL
Secondary structure LLLEEEEEEEEEEEEEEEEEEEEELLLLLEEHHHEELLLLLLLLLLLLLLLLLLLLLLLL
LEEELLLLEEEEEEEEEEEEELLLEEEEEEEEEEELLLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL
PiMo oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiTTTTTTTTTTTTTTTTTToooooooooooooooo