NONHSAT142004
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142004 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2250 nt |
Genomic location |
chr16-:32274148..32276835 |
Exon number |
2 |
Exons |
32274148..32274863,32275068..32276835 |
Genome context |
|
Sequence |
000001 ACCTAGGTGC TCAGCTCTGA GATGTGTCAC AACATTGCCC AATACAGGCA GGGCACAGGC GGGAGAGTCA CATTTCCTGG 000080
000081 GTGCTTGGCC CAGTGGTATG TCACATTTCC TTATGTAGGA AGGGCACACG TAGCAAAAGA GAGTCACATT ACCTAGGTAC 000160 000161 TGTGCTAGAG CTATCAGTCT CTGTGTCATT CAATGTGAGA GTTATGATCT CTTTAGACAT CCATGTAACA GAGCCTCAAC 000240 000241 TCCTTCATCC TCAGATGTAA AGGCTAGTGA AGACCAAATA AGCCTTGAAA GGTAATTCCC CTAAAAAGGC AGAATGTCTT 000320 000321 AGGCTTTGGC CTCTCCCCTT CAAGCACAAT GAGATCATAA CCTCTCTCTT GACTTCTCAC TATGCCCAGC AGTGGAACAA 000400 000401 AGCTCCTGAC TCCACACCCT CACCTTTCCA CCCTTGTACC TTCACTGGGC AGACAAGAGA CGAGAAGACC TGAACTCTGG 000480 000481 GACAGTCTGG GGAGAAAAGA ATCCAAAAAG GGTTGAGGCG GCAAGGGCTG AGCTCCCATG GGTGCCCCGG CCCAAAGGTG 000560 000561 CAGGTCCAGG CTGTTTTCCA GGTGGCATTC AGTGCAGGTT CTTCAATGCC ACTAGAAGGC ATGAAAAACC CACTGTAGCT 000640 000641 GCTGCTTCTT CCTTTTCTTA AGCTCTGAAA ATGCAAACAC TTTTTCAAGG TTTTCAGATA TGCCCAGGTA CCCCCAACTG 000720 000721 AAAAGGAGGA TAATGGCATT GTTCATCATG GCTTATTGTC TTGCCCAGGC AGGAGCCAGC CTCTGACTTG CCAATCCAGC 000800 000801 TGCCCCAGGC TGGAGGTGAT CTTGTCGAGC CTCCTCCCTG CAACTCCACT CCTCTTTTTT CTCTTCCTCA ACCACCGGCA 000880 000881 TACTTTTGGT CATCCTTCTT GTTGTCACAA TGGGGGCGTG ATACCATAAA GACCTGGGAA CTCCAATGAT CTCAGGTCCC 000960 000961 GCAGGGGTCA GGTGAGCATA TAGGAAGTCC AGAAGGACAG TCATCTGCCA CCTCCAGTTA AAAAAGAACA AAACCCTCAC 001040 001041 ACTCCAGGAA TGAGTCAAGA ACCCAGTGAA GGCCACAGGT CTAGCCCACA ACCACCTAGG TATGTGGGGT CCTCCAAGGC 001120 001121 TCACGCTTGT GTCCTGCAGG CTGGAGCCCA TGCGAGGGTC TGCAGTCTTT GTTCCGGATG GGGAACTACT GCTTCAGCTG 001200 001201 GTTACCCAGG TGCCCCGATG GGGAAAGGAA GGAAATGGTG AGAATCTTCA GCACAGCGGA TCACATCACC CTGGAAGAGA 001280 001281 CCAGTCCTGC CTGCGCATAG CACAAGCAGC CGCAGGCTAG AGGCAGTCAT GTCAGGCCTC CTCCATACAG CATCTCTCCT 001360 001361 GCTTTTTTTT CAAACGGCCC TAATCACTTA ATTTGGTCAT CTTCCCTGTC ACAATGGGGC ACCTGGCGCT ATAGACACTT 001440 001441 GGGAAACACA CAGATCTGGG ATCCTACATT GTCCAGGTGA AGACGCCGGG AGTCAGAGAG GAAAGTCTTT TGAAGCCTCC 001520 001521 AAAAGGAATG CACAGGACCC TACTTGAAGA GGTGGCGTGC CCAGTGGCGG ATACAGGCCC CACACATCGC AGCAGTAAAC 001600 001601 AGGGACTCCA CGGTGTCCAG CTCTCCAGCC TGGGGTTTCT CATCACCCAG TGATTCCAAA AGAAACGATC TACAATGGCA 001680 001681 TGACTAAGTT CCAGAAACAA ATAAACAAAA TACTGAGGGA AGCCCATTGG TCACTTTGAT TCTTCAAAGG TGACAATTGT 001760 001761 CCCTCCCTGA AATCTTATGA GTGCATGAAC AGACTATTCT AATGTAAATG AAATTCACAC TAAAACTGAT TGAAAGATGA 001840 001841 TTCTGTTTCC AAGGTACTTT GTATTCTCAA ATTGCATCTG CTTACCCTGG CCCCCTCAAA ATGGAAGAGT GATGACTATT 001920 001921 TGTCTTCGTA ACACTGTGGG GACACAGAGC CTTAAATGGA AGAGTGTCAA AAGCAACATT CCATAAAGGG CTGTCACTTC 002000 002001 CAATTTTCAA GCGAGGTTGG AAACCAACCA TGATGTATGA AACACTGTTG GCCAAAGTGC ACAATTAGTA ATACAAAATG 002080 002081 AATAATATAA ACTATTGTAA ATATGTGTAG ACATCGTGGC AATTTGGACA TCAAAAACAC TGCCAAATTC AGAAAGAGGA 002160 002161 AGCTGTAAAC TCATGGCTGT TAGGAAGCTT AACTTCTGTG TACTAGAACC TATCAAAATT AAATTTCTCC ATGTCAAAAA 002240 002241 AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT142004_smProtein_1049:1240 |
Length | 64 |
Molecular weight | 6526.2832 |
Aromaticity | 0.0634920634921 |
Instability index | 61.8984126984 |
Isoelectric point | 9.64715576172 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0441225539265 |
Amino acid sequence | MSQEPSEGHRSSPQPPRYVGSSKAHACVLQAGAHARVCSLCSGWGTTASAGYPGAPMGKG RKW |
Secondary structure | LLLLLLLLLLLLLLLLLEELLLHHHHHHHHLLLLEEEEEEELLLLLELLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |