NONHSAT142367
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142367 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3771 nt |
Genomic location |
chr16+:49320584..49324354 |
Exon number |
1 |
Exons |
49320584..49324354 |
Genome context |
|
Sequence |
000001 GTGCTGGTAG GAATTTTGTA TGAAGCTGTT ATTGAAGTAG ATGACATTAA GGTCAAAGGA AAAAAAAAAC AGAAAATAAT 000080
000081 GTAATCCTAC AGAGCTGCTC TTAAGATCTT GAGAGAAAAA CCACGTAGGT AACATCAAAC ACTAGTTGGA ATCTTTCCAA 000160 000161 GAAGTAATTA TCTGTGTGCT GTTTGTGGTG GTTGATTATG GGAACAAACC AAGGTTTAGC CAattcagca aacatttatg 000240 000241 gagtgcctgc aatgtgcatg tcactgtttt aaggcctgtg cctactgtaa aggtgaccca cacatgatgc ctgccttgca 000320 000321 ggacttggag ttcagcgATA ATAAGAGATG CATACCTGAA AAGCCTATTT AAGACTCTTC CGGTTCTACA AAGAAGGCTT 000400 000401 CTTGAAAGTG GTAGCTTTGA TTACTCTTTG GATTTATTTA CATTTATCCT ATAATCAGAA GGTATACAAA ACAGACTCAC 000480 000481 ACATATATAA AATTAATAGA TTAGATAGCA TTTAAACAAA TATTTCAGGT AGGTACTTCA AATGCATTTG ACATTTATCA 000560 000561 AAGAAATGGT AAGTGCTGTC ATCCGTGGGT GGCTGGATTA ACATGTGGGA CTACTTATCA CCAATTTTGT TAGGGATCTT 000640 000641 AGGGAAATTC CTGGATCTTA TATTCACAAG CAATTGTATA AATACTTCCC ACAGCTCAGA GACCTAATAG GATGGGGTCT 000720 000721 TAGAGAAACA TCTTTTGAGC CACAGACTTC TTTGTTACCA GAAGGAAAAT GAAAGAAGAA ATTTAAATAC CACTTGAAGA 000800 000801 GAGGTAAATA AATGAGAAAT GGGGCTGAGA GGGCGGGTAT TTTTTTAAAA ATTCATTAAA TGGAAAAATC CACAAATGTT 000880 000881 AATTCTGGTA GATTTCTTAG AAATTACATC AGAGGAGCAT GCTTGGTCTT CCCACCCTCA TTAGGCCTCA GTGACAGGTA 000960 000961 CTTGAACAAC TGAGCCCCTA ATGTGCATGC TCCCCCAccc ctgaagccag tctctgccct cctcttccct cctcttgccc 001040 001041 ctggaagctg atcgccacca actggcctct gggtggattt ggccaatgga agcacctgta gagggaagag agtgaggtta 001120 001121 ggatatttct tcctgctgtc tccgtgcttc cctgcagaga gtgtgaagaa atgaccctga aaagcctctg gcagaggatt 001200 001201 cttctttcag gatggtgtcg cctcctcagc agcccatcct cctcccctgg actcaagctc tcattccagt aacactcctt 001280 001281 cctccttctc catcttcagg gggaggtttg ccagtcggtg ggttctaagc atatctcgct gattcccccc aaccctgccg 001360 001361 acacctctgt aggtcgtccc ttcattaaaa tctctccatt tgaactatct gagtttaatt ccatttcctc ctggtatctc 001440 001441 agtgatacaC GGTATCAGTA CAAAAATCTC GCTTCACCTT CAGAACCAAC AGATTTGAGA CATTTTATCC TCTGTGGAAC 001520 001521 CATTAGTTAT TTTGTCATTG GTTGTATCAG AAAAAAAAAT CAGGAATGCA AATCCTTCTT TATTACAGAT TCAGATTTGC 001600 001601 ATATTACCAA TGTTATATAT TTTAAACAAA ACTATTCATC ATAAGTTTTA AAAATTAACT ACTGGAGTAG TTAATGAATC 001680 001681 TGAATGTAAT TATGTAGCTT TCATAATATT AAAGTAAAAA TACTAAAAGA AGTATTTCTT AAAGAAGCAA ATGCTCAATC 001760 001761 TCCAAGTAAA TTTTATTCTA TGCTCTTCCG GTATAAGAAT ATGTTAATAT CTTGAAAAAT ATCATATTAT TTTGTGAACT 001840 001841 CATAAAGCTA TTTTGAGTTT TTGTAAAATG AAAACCTTAC CAAAATGTAT TTTATTGTTG GAAAGCTTGA CCGTTACTGC 001920 001921 TGTTTAATTT TTTGAGCTTG TAAACTTTAT TTGTGCATGT TTTCAACAAA GAAGGATTTT ATTGTTATTA CATAAAACAG 002000 002001 GTGATTTCTA GATTTTAAAA TCACAAATTG AAAGCAAGGC ACAATAATAT ATATTTCAAG ATATAGGTAC TTAGGAGGCA 002080 002081 TCCTTTTAGT CATCTGTTCA ATGTAGCCAT CTATTTTACA CCTACTGTCT ACTATTGTTT GAGGTCCTTG CCAAAGTATT 002160 002161 GCAGGCTAGT TAGGAAACAT AAAACAATTA GAAAGTAATC TATGACAAGT AAGCTATCTA TAAATGGCAA TGAAGGGTAG 002240 002241 AACAAATTCA ATGAAAATAT CTATTTAATC CTAGTGTTTA CTGGTCTAGA AGAATAGGCT GAGTAAATTA GTATTTCTCT 002320 002321 GGCTGTTGTG GTAACACATT GCATGCTATA ACAGTTTTAA GTAATTACAG GTGCATTGAA ATTTATCTAT GGCTTTGTCA 002400 002401 TCATATTCTA AAATGTCATG AGTACTTTTT TCTGACCTCA ATTACTATGA AATTGGTTTC CAATATTTAA TTAACCAAGA 002480 002481 ATATCAAGTC TATAGGGTAT TATTAAGGTG AGACTTCTGT AGCCTTTTCA ATAAAGACCA GAATTTTGGA GTGCCTTGAA 002560 002561 CCTTAATCAT TGATCTTTAA TTCTTATTAA GTCAACTGCC CACCTTTTAA AGACTGAGGC CCAGGAAGAG TAAGTTTCTC 002640 002641 TGAGACAATG CAtacagtac agtgcttctt gggtattggc tctaagacca gatgcaaaga aaggctaaaa tcccatttca 002720 002721 ttgttcatta ggtgagaacc ctttgttaag ctgtgtaacc tctgtgcata gtttcctcat cagcaaagtc agaaaaagta 002800 002801 tgtacctgaa ggactgattg taaggctggg atgagagaat ccatgtgatc agccctcacc aacagGTGCT GCCCAGTTCA 002880 002881 TGAGTGCTGC TGCTGTCCTG CCCAAGTACC CAGCTTGCAG AGTGCCAGAG TTAGAGTCCC AGGGGTGTTC TCCACAGCTG 002960 002961 CATGCTTGAT CCAGGCCTAT CAGGTGAGTT GGCTCTTGGC TAGTGGTTTT TCTTCTCTTG CTGTACAAAA GTCCAGACAG 003040 003041 TAATGTCTTT TTTTCATTTT TATAGATATA TTCCATTGAA AGTCCTCATT CTCAAATTTA AAACAAAGAC TTTTTGTGTA 003120 003121 CCTCAATAGC AATGCACACA CAGTTGGCTT CACAAACATA TTGTACATTT CTTTTTTTCA Tatttattca acaaatgtat 003200 003201 attgactacc caccgtgtga caggtgttat ttgttgacgg aaccaggcat catcagcaaa caaaactgac aaagcttcct 003280 003281 gccctctgtg gaAGGCATCT GAGGAAGAGA CTGGATTTTG TAGCAACATG TTATTCTCAT TATAAACTTT ATCATTGGAA 003360 003361 TACTAAAGCC AAATCATCCC CCATCTCCTT GATCAGGATA CCCACTTAAT CTAGGCAGCT ACACAATTGT GAGAGCCTTT 003440 003441 GTTTTTTTCT GCTGAAACAT CCTTAAAAAG ATACCTCACA ACCCAAGATT TGGCTTTTCT TAAATACGAT TTTTAATTTT 003520 003521 TTTCATTTCT ATCTAGAGAT TTAATTGGAA ATGGAAAATC ATCAATTTTC CAATTAAATG TCTGTTCCAA TCAACATTAT 003600 003601 ACCTTTTAGG TTGTCATTGT CATTTTTAAG TTTAAGCAAC TTTAAGGATT TTGAATCTGG CTGCCTGTAA ATTAAAGGTG 003680 003681 AAAGTAATCA TTGTGTTGGA TTGGAACATT TTGTCAATTG AGAGTGGTTT CCTTGTTCTT AGTGTATGAA AAGTTTATTT 003760 003761 TTCTAATGTA G |
Predicted Small Protein
Name | NONHSAT142367_smProtein_3131:3268 |
Length | 46 |
Molecular weight | 5383.2221 |
Aromaticity | 0.177777777778 |
Instability index | 62.8422222222 |
Isoelectric point | 5.36175537109 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0259419082949 |
Amino acid sequence | MHTQLASQTYCTFLFFIFIQQMYIDYPPCDRCYLLTEPGIISKQN |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEELLLLLEEELLL |
PRMN | - |
PiMo | - |