NONHSAT142514
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142514 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3167 nt |
Genomic location |
chr16+:52305431..52314661 |
Exon number |
5 |
Exons |
52305431..52307131,52307613..52307995,52309380..52309438,52313314..52313602,52313927..52314661 |
Genome context |
|
Sequence |
000001 TTCGGAATCA GATGAGTCCA TGAACTGGCA GCAGTCAggg cagtgatgac atcacagaag gaggatgggc cttagacaga 000080
000081 catcactctt tagaatccct gcaactttga gcaagttcgt gaatctcact aaggctcagt ttcctccata aaatTAATCA 000160 000161 ATATCAGGGC CTCTGCATTG GACAACTCCA GAGGGCACCA TTGGGGTTAT ACCTTGTGTT TGCCTAACCT TCATTGCAGT 000240 000241 GGGCAGGTGC ATGCTTTCTA CAATGTCCTA AGGTCTAAAG GGGTAGAGTT CTGTGTGTGG CATTTTAGGC CTGGAAAGGA 000320 000321 TGAGAGTCTA CAAAACCAGA GAAATACTGC AGGTGAGTGA GGGGCTAAGA TCCAGATGCC CCCTGCCACA TTGATCCTCT 000400 000401 CCAAGACAGG AGGCCCCAGA TCCCCAGATC TGAAGCCCTT TTTAAGAGCA AGAGTATCAG CTGATGAATT TCATGCATTG 000480 000481 CACACCGTGA CTCCCAAGAT GGTCTGTCAG ATCTCCAGGT TCTGGAGGTT GGAGGTTCCG CTCAGTGACA GCCTGGCGGT 000560 000561 ACAgcatacc caggttcaaa tcccagatct accacttaat aactaggtaa tcttggatgg attacttaac cttcttaagc 000640 000641 ctcatttacc tcgtgataat ttattttata gagttgctga aagaatcaat gtgaaaatgt acataaagtg tttagcaaat 000720 000721 acagtagtgc tcaataaatg tcagctttgt tgtAACTCTT CAGATTTTCC CTGGGCAAAG TAAAAGCTTT CTTGGAGCCT 000800 000801 TTCTCTTAAT CAGTCCTGCC TCAAACATCC CTTCTGCTGA AACAAGCTGT GATTAATCCA CTGTAGACCC GACACTCCAC 000880 000881 TAAATGGGGC ACAGTGCAGA GGTCCGTAAT GAGGATCTTT TTAAAAGTAA AGCATATACA TCAGTCTCAA CACTTATAAA 000960 000961 CATCAGAATT ACTTGGAAAG GAGGTTTACA AAAATGCAAA TGACATTTTG GAAAGCCTAA TTCAGTAGGT TAGTTTAGAG 001040 001041 Ctgtgatatt gtgatttata ataaatatat atttgctctt ggtctctatt cctggcacag agctcctaaa gtccttggaa 001120 001121 tgtcctaagt ggtgagttta tgctaaagag gtaacttttg gaaaacctct aaggatgggg ggctggttgc caggggagcc 001200 001201 aaccatgtga ttagaaggtt ggaactttca ccacccacca ccctgacctc cagggaaggg aaagtggctg gaagttgact 001280 001281 taatttgcaa tgggcaatga tttcatcaat cacgtctatg taatgaagcc tccacaagaa aaaaatctta acagaagacc 001360 001361 ttcagagagc ttccaggttg ctgaccacat ggaggtcatg cccagagagg gtgtgaaagc tccacacccc ttttccatac 001440 001441 cttgccctac ttatctcttc catctggctg tttctaagtt gcatccttta tattaaagca ataatgttgt aaatgaactt 001520 001521 tctctgagtt ctgtgaccca ttctagcaaa tggtcaaacc caggagggaa tggtatgaac ctctggttta cagccattgg 001600 001601 taagaagcac acatgacaac ctggactttc catcaacatt tgaagcggga gcagtcttgt gggatcaagc tcttaacctg 001680 001681 tggggtctgc tactaactct gGAATCCAAT GAACACATGG ACCCAACACT CCTTTGGCCA AGTTGATGAT TCTCCACCAT 001760 001761 TTATTTGCCT GCCTCACTAT ACACTTCTAG CAAGCCACTG CAAGGCTGCA TTGCAGCTAA GAGGAAGCCC TCCTTGAAGG 001840 001841 CTGCACAGCA AGGAGTGTTG GCAGAGTAGC TGGGTTTCCA CTGGGAGAGC ACGAGTCAGC ATCATGCTGG GCTCAAGCAT 001920 001921 GGATATGCAC TGCTGCTGCC AGAGCATCAT AATTTGCAAG CATTTATCGA GTACCCTTCA TCTAATTTTC ATCCTGCGGA 002000 002001 AACTAGAAAT TGCTACACTT GCACACAATA AACTTCTGGC AGTTAGCCTT CTAAACTGGG ACACTACCAT TTGGGAGGGA 002080 002081 AAAGGTGCTT CACGTGACTT TTGAGTTATA GCTGACTGCC CTAGCTCACA TTTTAGTGCC AGActgctgc caagcctcta 002160 002161 agcccaaggc ctgctctctc tttattaaga aaaaatgatt agcaagcatc agagagttag taaagacata ttagcaccaa 002240 002241 acttgaactt tttcccttgc cttgaagata agaattgaaa gagaatcgaa aggcagtgac ttcatcacgg taagacattg 002320 002321 tttaatccct tgttcatgtg ctacctaCAG AGATCCCAGA CCACCACCCA TGATCCCAGG CTGGAGGAAG CAGCAGGCTA 002400 002401 GCGGAATTCA GGACCAATGA GCCAGGAAAG AGGGACCCAA TGCAGAGCTC ACATCCCACC CTCCTTCCCC CATGACAAAG 002480 002481 CACTGGCAAA CCCTGCCAAA GAAGAAGCTT GGCTGCAAAG CAGTCTGGAA CTGGACCCGG GATAGATTCA CCAGGAGCTC 002560 002561 ACCACCACAG GGAATGCTGC ACTTTGACTG GACAGAATGC ATCCTCCATG CCCACAGAGC ATGTGCCCAG GATGAATCTC 002640 002641 ACTGTATCCC AGTTCCTCAT GCTTGGCCCC AAACCTCTTT TTCACAGTAA TAAAGAAAAC ACACTTTACA AAAAGGCAGT 002720 002721 TCATCTATGA ACATATTGGC TAGGATAACA CATCTTAGAG CTAAATGTGT CACTGTAAAT GGACTCATTT TATATCTCCA 002800 002801 CATACTGTAG ATGTTTAAAA AAAGGTACAT GCACAGAAAC TATGGGAACT GAACTGGAGT ATGAGCCAAT TACCCTAGAC 002880 002881 TTTGCTGTAA TCTGACTTTT GTGTAGCACA TTTTCTTTAG CATTTTTCTT AATGGGGGAT GGGGAGTGGA GGCAAAGGAG 002960 002961 ACAAACTGAC AGCAGAGCAT TTTATTTAGA CAAAAGAAAT ATATTCAGCC TGTCTTAAAT TATTTGTCAT TATAATGACG 003040 003041 TTTTCTAATT TAAAAGTATT TTGCTTAATA ATATATAATT GAATATTATA TGCAATTAAT CATATCATCA TAGCTCTTTA 003120 003121 AAGATTTAtc tctcaatatc taattaatta cgaggtcttg tttcttc |
Predicted Small Protein
Name | NONHSAT142514_smProtein_2471:2689 |
Length | 73 |
Molecular weight | 8483.6295 |
Aromaticity | 0.111111111111 |
Instability index | 58.1388888889 |
Isoelectric point | 9.16265869141 |
Runs | 8 |
Runs residual | 0.0298053527981 |
Runs probability | 0.028550609433 |
Amino acid sequence | MTKHWQTLPKKKLGCKAVWNWTRDRFTRSSPPQGMLHFDWTECILHAHRACAQDESHCIP VPHAWPQTSFSQ |
Secondary structure | LLLLLLLLLLLLLLLLEEEHHHHLLLLLLLLLLLEEELLHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |