NONHSAT142556
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
892 nt |
Genomic location |
chr16-:53044307..53045198 |
Exon number |
1 |
Exons |
53044307..53045198 |
Genome context |
|
Sequence |
000001 TGGCAGATGT AGCCAGTCAG GTGCTTCCGG GCTCTGATCT CACCATCCAG TCTCAGTTGC TTATATATGT GAAAGCACTC 000080
000081 ATCCAAGTGG GAGATGAGCC TGGTTTTCCA ACAATGAGAC AACATGTTTT TGGGTGGTAT GTCAGCTTCC TGGTGTCTTT 000160 000161 AGTTGTGCTT AGCACATTAT GACCATCAAT GGGAGGCCTT AGCACATGGT AAGCATGAAC TCCAAGGCTG TGTTCAGGAG 000240 000241 TCCTTGAAAA TATGATTCAC AGTAAAGTTT TACAGCATTA TCAGGAATGT GACAAGATTG AGGAGTTAGG ACCTGGTAAT 000320 000321 GTACAGAAAG AAGTCTCATC TTCCTTTGAC CAAGTTATCA ATAAGGCAAT TTGAGAGATA ATCACTCATT TTGCTGCTGT 000400 000401 CCTCATCACA AATCCCTTCC ATATTATCAC CGAGGTACAA TTCATTGGCA GGGAACCCAA GTACTGCAGA CTTTGTGACT 000480 000481 CCATAGCAAC CATCTATCAG GGAGAGGGCA TCCTAGGATT TCTCATGGGT CTTGTGCCTC AGCTCCAAGG CGACATCATT 000560 000561 TCCTTGTGGC TCTGTAACTC ACTGGCTTAC CTCATCAATA TCTATATACT TAACAGTGGG GTTTCCACCA TGAATGAAAT 000640 000641 AAAGAATGAT TCCCAAGTTG TTACAGAAAC TTTTGCCAGT ATGTTGAGCT AATCTCTTGT GTTTGTCCCT AATTTTATGT 000720 000721 CTGTCAACAG CCGAAGGCTT GCTGGTGGAT CCTTTCCTTA TTGCCCAATG TACACTTCTT GCATAGATTG TTGGTGCATG 000800 000801 CTACATTACA GGAAAATATG AGCTGAGGAA ATAGCTTGCT TTTCTGGAAG GTCCCCTTTG GGAAGACTTA TTATTGTGAC 000880 000881 CTGAGAATGT AA |
Predicted Small Protein
Name | NONHSAT142556_smProtein_524:691 |
Length | 56 |
Molecular weight | 6049.9601 |
Aromaticity | 0.0727272727273 |
Instability index | 52.5818181818 |
Isoelectric point | 3.91632080078 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0318517046459 |
Amino acid sequence | MGLVPQLQGDIISLWLCNSLAYLINIYILNSGVSTMNEIKNDSQVVTETFASMLS |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLHHHELLLLHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii |