NONHSAT142752

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT142752

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

1827 nt

Genomic location

chr16+:57481337..57488216

Exon number

3

Exons

57481337..57481490,57484952..57485120,57486713..57488216

Genome context

Sequence
000001 AGCGACGACT TCCGCCCTCC TTAGGGCCGT GGTCCCGTAG CTACCGGTCG CGTCGCCGTG GGCGACGTGC CCGCTTCCAA 000080
000081 AATGGCGGCG GCGGCGGTAT CTGGTGCGCT TGGCCGGGCG GGCTGGAGGC TCCTGCAGCT GCGATGCCTG CCCGTGGCCC 000160
000161 GTTGCCGACA AGCCCTGGTG CCGCGTGCCT TCCATGCTTC AGCTGTGGGG CTAAGGTCTT CAGATGAGCA GAAGCAGCAG 000240
000241 CCTCCCAACT CATTTTCTCA GCAGCATTCT GAGACACAGG GGGCAGAAAA ACCTGATCCA GAGTCTTCTC ATTCACCCCC 000320
000321 CAGGTATACA GACCAGGGCG GCGAGGAGGA GGAGGACTAT GAAAGTGAGG AGCAGTTGCA GCACCGCATC CTGACGGCAG 000400
000401 CCCTTGAGTT TGTGCCCGCC CACGGGTGGA CAGCAGAGGC GATTGCAGAA GGAGCCCAGG TGTGTATAGG TGAGGGTGGG 000480
000481 GCCACCTAAC CAAGATGAGC CAGGATGGAG TCACACCAGG CAGAGCGGGG GGCCTCATGC CTTCTTCCAG TCTAGCTCAG 000560
000561 AGCCCCTCAC AGCTGCAAGA TTGACTGGTT TTTTTCCCCC AATAGGGTGG AACTGGCTTT ATTTTGTAGT TATAAAGAAC 000640
000641 Ataccatgga gttggttctt gggagttgtg ttctaaaggc aatctattag gcaagaattg tctgtgatca aaactcccat 000720
000721 gtttcattga ctctaagatg ccattggttg taagaagcat catttttaaa tgcatcagta aaaaagaaaa catactgccc 000800
000801 ttcgaactat gacaaagcac ttctgtgatt cacactgatt ttttaaaatg aaaaatatat ctgcatctta gaattaatga 000880
000881 catatggtgt ttgaaaaccc ccaagaaggc accactttgg agaccaacac atcttatttt cccagaaact ctaatagcat 000960
000961 tttctgcatt agtacagact gctgctttag attaggcagc aggctcatgt tcaggccatg ttgtaGAGAA TCCTCCAGCA 001040
001041 TAGCAAGATA CCATCCTCCA AGAGactgag gggatgacag agttgcatct tccatcccag gcttgctgca gggcatctac 001120
001121 ccatggacaa tgggcaaggt tgctgcttta ctgaaattta actgttattt ccttgtctTC TCTCACTCCC AAGTGCACAT 001200
001201 TTGGTAACAG AAGTCTCATT AGTGAAATGT GGGTGCTCTG ACTCCACTGT AGgctcattg tgaaaactga acaatacaaa 001280
001281 caaatataaa aaagaatgta gaaaacacct ataatcacac caaagatcat actatcaaca tttatgccta gatctttcca 001360
001361 atTAAAACCC TTTATATGat tcattcttta aatgtttatt gagcaaataa tgtgccctag gcactgtgct agtccaagag 001440
001441 acatgacagg ggtcaaagtg gtcaagatgg atctgcttcc tgcccttgtt gagcttccag tctagcaaca ttaataaaat 001520
001521 atatacaaat gtttacttag aagatgtggt aagtgctatc aaggaaaGGT GCTGTTGGGC TGTATAATGG AGGGACCCGA 001600
001601 TCATTAGATC AGGTCACAGC TGCGAGATTG ACTGGTTTTT TTCCCTCAAT AGGGTGGAAA TGGCTTTATT TTGTAGATAT 001680
001681 AAAAGTAATG AACCATGGAA TTGGTTCTTG AGAGTTGTGT TCTAAAGGCA ACCTATTGGC AAGAATTGTC TGTGATCAAA 001760
001761 ACTAccatat ttcattgact ctaagatgcc attggttgta agaagcacca tttttaagta catcagt
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Predicted Small Protein

Name NONHSAT142752_smProtein_1391:1504
Length 38
Molecular weight 4169.0959
Aromaticity 0.027027027027
Instability index 67.7297297297
Isoelectric point 6.51177978516
Runs 7
Runs residual 0.009422266303
Runs probability 0.0429252782195
Amino acid sequence MFIEQIMCPRHCASPRDMTGVKVVKMDLLPALVELPV
Secondary structure LEEEEELLLLLLLLLLLLLLLEEEEELLLHHHHLLLL
PRMN -
PiMo -