NONHSAT142761

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT142761

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

3183 nt

Genomic location

chr16-:57599222..57641009

Exon number

4

Exons

57599222..57601761,57604387..57604527,57605082..57605213,57640640..57641009

Genome context

Sequence
000001 GAGCAGGAGG CCTCAGCCAG CCCTCAGCAG GAACCCAGCC AGGGCCACCC ACCCCAGCCA TGCTAAGCCT CTGCCAGAGT 000080
000081 GAGAGAGGCC CGCGTGGGCC AGGGGTGGCA CAAGAGTCAC TCTCAGGGTG GGCCAAAGGG TATCAcagag acagcccggc 000160
000161 cctggagcca tgcagaccag gagccgggtg ccacctccaa caccaactca cagtgacttt gggcaagtcc tttttttgtc 000240
000241 ttgaacctca gtGGGCCTAG TCTTGGCAAC TGTGCAGTCG AGTGTCCAGC CCAGGGTCTA GACCAGAGCC AGTGGCAGCA 000320
000321 AACAGCCCTG TTATCAAGAA GCAACATAAC aagaagaaag gagaaaaaag ggctggcaac aggacccggc ccttgccctt 000400
000401 gtgaaaacga agccagctga tacCCAAGGC CTGCCACAGA ATCAGCCCCC ATCCTGAGCC TGCATCAGCC AAGAAGGAAA 000480
000481 AAGGTTCCAC AGCCAACTGC AAGATATTCC ATTTGGAGCC CCAGGCCCAT GTGGCCCTTC TGCCAGAGCC AGGGAGCCCA 000560
000561 CTGCAGCCCT GAGGGCACTC ACATGGACAT GTTCTGGAAG CCTGTGCCAT TCTCCCAGCT GTCGAAGACG GGGATTGTGC 000640
000641 AGGGTGAGAG AATGGTCCTC CATGGCCCAG GGACATCACC CAGGCAGCAC TACCCACTGG GTGCATAGGT GCATGCCGAC 000720
000721 AGGGAAACTG AGGCGAAGAA GGGGCAGGGA TCCCACAGCA GTCGCACCAC AAGGCTGGTC TCCCGCCTCC TGGTCCCCAC 000800
000801 CCTCTGGAGA AGCACACCCA GTTCTAGTGG ACTAAATGGG ACACAAGGAA GCGTGATGTG CCACAGTGCA GGGCAGGCCC 000880
000881 AGCACTGTGG CAGCGGAATA CCTGAAATGG AAGTGCAGCA GGACTGTGAT CAGCGAGGCC ACGATGGAGA TGCTGCAGCC 000960
000961 CACGAGGGAG ATGTACGTAA GAGGTGCCAG CAACTCTGCA GGGACCAGGG CTGGGGAGAG TTGCTGCAGG AGGGAAGAGG 001040
001041 GGCTGGAGGC CAGAAGCATA GTATCGCCCT TCCTCCCAGC CTCAGTCAGA GGGACCTCCT GAGGCCTCCT CTCCAAGTCC 001120
001121 CCTTCCCCAC AAGCCTAGCC ATGGACCTGG CTTGAACAAG GCCATGGCAG ATACAGTCAG TTTTGCCCCC TCCACATCTC 001200
001201 Ccatctccct cttcttctat gagtgcctcc cttctcccac tccctatgca cctgtggggt tccaccactt tgccctcttt 001280
001281 gtgcagaaag gggtgccagg cctggtcaag cagggccctc cctccttctg cctatagcga ttgggtcagg gatgagcaca 001360
001361 tggctggcag aactgggtaa aagaagattt tattccactg gcctgaaagc tagcagggca tgagcctgga actgctgcca 001440
001441 gctatattat tatctcataa ggagatccta tttgagggct aagccagcac agagcaagca cagttgaggg acaaagatag 001520
001521 agtgctatct tagtgatctt agtgatcagc ccgtggatca agccatgcct gaagcctaac ccagcctttc cagaaacatg 001600
001601 agtccataaa gttttttttg ttttttgctt aagcccattt cagttggact ttctgtccct tgcaCCAGCT TTTGCCTTGC 001680
001681 TCCTCTGCCA CAGACACAGG GCCCTCTGTA GCTCTGAGCC CCACTCAGGA TGCATACATA CCATGAGAAC AGCAAAGTAG 001760
001761 GTGAGGTGGT TGCAGCGGCA GAGCACCTGA GAGTGGGAGG GCTGCTCTGT ACGACAGCCC TCAGGGCTCC AGCCCCCCCA 001840
001841 GGGCTGTTTC CTGGCTCCCT CCTTCCAGAA GACACAGGTC AGGGTGTAGC CTTCCTGGGT GGAGATGCTG GGTCAGTCAT 001920
001921 AGGGTGCAGA GGAAAGGCTG CAGATCAGTG TCTGGGAGTC CTGGGGGCCA ACGGTGACTC AACTGCACAT TTGCCAACAT 002000
002001 TTTACCAGGC ACTGGCTggc ctttggcttc agacagtctc agattcctgt cccacctcca ctgtgggctc tcagagtgac 002080
002081 ccaggcaaga caccaagttg ctctgagcct cagtttagtc atctacagaa taggatcatt cgtacccatg ttacaacaat 002160
002161 ggtggaaaaa caaagggcaa cacggaatct tgagtgtcca gctctggcct tttatacagt aggcgctcca taaCCAGCTG 002240
002241 ATCCCTTCCC TTCCTCCCCA TGGGGAACAG CAATGTGCTC AGACCCACGC CTGGTtgggg gagactcatc cacagacaac 002320
002321 cctaatgcca agccacgtgg gtggagaagt ggaggaaatg acacaggtag tcacggaaga ccatggaggg taggcagagc 002400
002401 tgacccaaag ggagaagggg aggtgggggc cctgaaccct tagaggacgt gttggatttc aacacgagta gggcaagggc 002480
002481 attccaggtg gagggaacca tagtggcaaa agcccagagc tgaaagGAAA GGATGATGGT GAAATTTAGA GTGCAGGGCA 002560
002561 GTCCTGGTGA AGCTGAAGGG AAGATGAAGC CAGAAAGCAG AGGCTCCGGG CTTTTCAGGA ATGCCAGGAA CCAGAAATGG 002640
002641 AGGCACTGAG GCTTGTGAAC CACCCCACTC TGCCCCCACC CCCAACAAGC AGCCCTGTCT CTGTTCCAGG ATCAGCATCT 002720
002721 GCACTTACCC TAggagctca ctccttcacc ccagtccctg ggccgtgtga cccaggcctg gccaatccac acattccatc 002800
002801 cccctgggca cagtgacagg tgcagggatg gacatgtgtg acccagctga acctttaaga tcctgagacc ctgatctgca 002880
002881 ctggggcagg ttgtgggtgg ggagtcgggg gaagagcctg atgggaagag ggaaaggaag tctggctctc cagcatccat 002960
002961 catgccacag aatggacagc caagacagga gaccattgct gagacggaga gagactgagc cacaagggca tcagatccat 003040
003041 ccctggatcc agctatgtct gaagctggtg gatcacctct agacatttca tggatgtgtg ccaatcagtt ccctctgtgc 003120
003121 tcaagctggc ttgaagtggt cttttcttac ttgcaactga aagaattctg acaaatgcaT GAG
[back to top]

Predicted Small Protein

Name NONHSAT142761_smProtein_59:259
Length 67
Molecular weight 7179.1037
Aromaticity 0.0757575757576
Instability index 48.9772727273
Isoelectric point 7.72088623047
Runs 7
Runs residual 0.0445472690982
Runs probability 0.0493602846545
Amino acid sequence MLSLCQSERGPRGPGVAQESLSGWAKGYHRDSPALEPCRPGAGCHLQHQLTVTLGKSFFC
LEPQWA
Secondary structure LLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLEEE
EELLLL
PRMN -
PiMo -