NONHSAT142761
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142761 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3183 nt |
Genomic location |
chr16-:57599222..57641009 |
Exon number |
4 |
Exons |
57599222..57601761,57604387..57604527,57605082..57605213,57640640..57641009 |
Genome context |
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Sequence |
000001 GAGCAGGAGG CCTCAGCCAG CCCTCAGCAG GAACCCAGCC AGGGCCACCC ACCCCAGCCA TGCTAAGCCT CTGCCAGAGT 000080
000081 GAGAGAGGCC CGCGTGGGCC AGGGGTGGCA CAAGAGTCAC TCTCAGGGTG GGCCAAAGGG TATCAcagag acagcccggc 000160 000161 cctggagcca tgcagaccag gagccgggtg ccacctccaa caccaactca cagtgacttt gggcaagtcc tttttttgtc 000240 000241 ttgaacctca gtGGGCCTAG TCTTGGCAAC TGTGCAGTCG AGTGTCCAGC CCAGGGTCTA GACCAGAGCC AGTGGCAGCA 000320 000321 AACAGCCCTG TTATCAAGAA GCAACATAAC aagaagaaag gagaaaaaag ggctggcaac aggacccggc ccttgccctt 000400 000401 gtgaaaacga agccagctga tacCCAAGGC CTGCCACAGA ATCAGCCCCC ATCCTGAGCC TGCATCAGCC AAGAAGGAAA 000480 000481 AAGGTTCCAC AGCCAACTGC AAGATATTCC ATTTGGAGCC CCAGGCCCAT GTGGCCCTTC TGCCAGAGCC AGGGAGCCCA 000560 000561 CTGCAGCCCT GAGGGCACTC ACATGGACAT GTTCTGGAAG CCTGTGCCAT TCTCCCAGCT GTCGAAGACG GGGATTGTGC 000640 000641 AGGGTGAGAG AATGGTCCTC CATGGCCCAG GGACATCACC CAGGCAGCAC TACCCACTGG GTGCATAGGT GCATGCCGAC 000720 000721 AGGGAAACTG AGGCGAAGAA GGGGCAGGGA TCCCACAGCA GTCGCACCAC AAGGCTGGTC TCCCGCCTCC TGGTCCCCAC 000800 000801 CCTCTGGAGA AGCACACCCA GTTCTAGTGG ACTAAATGGG ACACAAGGAA GCGTGATGTG CCACAGTGCA GGGCAGGCCC 000880 000881 AGCACTGTGG CAGCGGAATA CCTGAAATGG AAGTGCAGCA GGACTGTGAT CAGCGAGGCC ACGATGGAGA TGCTGCAGCC 000960 000961 CACGAGGGAG ATGTACGTAA GAGGTGCCAG CAACTCTGCA GGGACCAGGG CTGGGGAGAG TTGCTGCAGG AGGGAAGAGG 001040 001041 GGCTGGAGGC CAGAAGCATA GTATCGCCCT TCCTCCCAGC CTCAGTCAGA GGGACCTCCT GAGGCCTCCT CTCCAAGTCC 001120 001121 CCTTCCCCAC AAGCCTAGCC ATGGACCTGG CTTGAACAAG GCCATGGCAG ATACAGTCAG TTTTGCCCCC TCCACATCTC 001200 001201 Ccatctccct cttcttctat gagtgcctcc cttctcccac tccctatgca cctgtggggt tccaccactt tgccctcttt 001280 001281 gtgcagaaag gggtgccagg cctggtcaag cagggccctc cctccttctg cctatagcga ttgggtcagg gatgagcaca 001360 001361 tggctggcag aactgggtaa aagaagattt tattccactg gcctgaaagc tagcagggca tgagcctgga actgctgcca 001440 001441 gctatattat tatctcataa ggagatccta tttgagggct aagccagcac agagcaagca cagttgaggg acaaagatag 001520 001521 agtgctatct tagtgatctt agtgatcagc ccgtggatca agccatgcct gaagcctaac ccagcctttc cagaaacatg 001600 001601 agtccataaa gttttttttg ttttttgctt aagcccattt cagttggact ttctgtccct tgcaCCAGCT TTTGCCTTGC 001680 001681 TCCTCTGCCA CAGACACAGG GCCCTCTGTA GCTCTGAGCC CCACTCAGGA TGCATACATA CCATGAGAAC AGCAAAGTAG 001760 001761 GTGAGGTGGT TGCAGCGGCA GAGCACCTGA GAGTGGGAGG GCTGCTCTGT ACGACAGCCC TCAGGGCTCC AGCCCCCCCA 001840 001841 GGGCTGTTTC CTGGCTCCCT CCTTCCAGAA GACACAGGTC AGGGTGTAGC CTTCCTGGGT GGAGATGCTG GGTCAGTCAT 001920 001921 AGGGTGCAGA GGAAAGGCTG CAGATCAGTG TCTGGGAGTC CTGGGGGCCA ACGGTGACTC AACTGCACAT TTGCCAACAT 002000 002001 TTTACCAGGC ACTGGCTggc ctttggcttc agacagtctc agattcctgt cccacctcca ctgtgggctc tcagagtgac 002080 002081 ccaggcaaga caccaagttg ctctgagcct cagtttagtc atctacagaa taggatcatt cgtacccatg ttacaacaat 002160 002161 ggtggaaaaa caaagggcaa cacggaatct tgagtgtcca gctctggcct tttatacagt aggcgctcca taaCCAGCTG 002240 002241 ATCCCTTCCC TTCCTCCCCA TGGGGAACAG CAATGTGCTC AGACCCACGC CTGGTtgggg gagactcatc cacagacaac 002320 002321 cctaatgcca agccacgtgg gtggagaagt ggaggaaatg acacaggtag tcacggaaga ccatggaggg taggcagagc 002400 002401 tgacccaaag ggagaagggg aggtgggggc cctgaaccct tagaggacgt gttggatttc aacacgagta gggcaagggc 002480 002481 attccaggtg gagggaacca tagtggcaaa agcccagagc tgaaagGAAA GGATGATGGT GAAATTTAGA GTGCAGGGCA 002560 002561 GTCCTGGTGA AGCTGAAGGG AAGATGAAGC CAGAAAGCAG AGGCTCCGGG CTTTTCAGGA ATGCCAGGAA CCAGAAATGG 002640 002641 AGGCACTGAG GCTTGTGAAC CACCCCACTC TGCCCCCACC CCCAACAAGC AGCCCTGTCT CTGTTCCAGG ATCAGCATCT 002720 002721 GCACTTACCC TAggagctca ctccttcacc ccagtccctg ggccgtgtga cccaggcctg gccaatccac acattccatc 002800 002801 cccctgggca cagtgacagg tgcagggatg gacatgtgtg acccagctga acctttaaga tcctgagacc ctgatctgca 002880 002881 ctggggcagg ttgtgggtgg ggagtcgggg gaagagcctg atgggaagag ggaaaggaag tctggctctc cagcatccat 002960 002961 catgccacag aatggacagc caagacagga gaccattgct gagacggaga gagactgagc cacaagggca tcagatccat 003040 003041 ccctggatcc agctatgtct gaagctggtg gatcacctct agacatttca tggatgtgtg ccaatcagtt ccctctgtgc 003120 003121 tcaagctggc ttgaagtggt cttttcttac ttgcaactga aagaattctg acaaatgcaT GAG |
Predicted Small Protein
Name | NONHSAT142761_smProtein_59:259 |
Length | 67 |
Molecular weight | 7179.1037 |
Aromaticity | 0.0757575757576 |
Instability index | 48.9772727273 |
Isoelectric point | 7.72088623047 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0493602846545 |
Amino acid sequence | MLSLCQSERGPRGPGVAQESLSGWAKGYHRDSPALEPCRPGAGCHLQHQLTVTLGKSFFC LEPQWA |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLEEE EELLLL |
PRMN | - |
PiMo | - |