NONHSAT142791
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142791 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2393 nt |
Genomic location |
chr16-:57808621..57811013 |
Exon number |
1 |
Exons |
57808621..57811013 |
Genome context |
|
Sequence |
000001 ttgtaaatgg aattattttc ttaatttcct ttttggattg tttattgtta gttgtagaaa tgtaaccgat ttttgtgtgt 000080
000081 tcattttgta tccttcaact ttgctgaatt tattagttct aaTTGCCCtg cttttaaaat caaattaatt ccaacattca 000160 000161 aatcttaatt aaattcacat aaaactctag acttcctttt tgtcataaaa tattggaaga tgtggcacct ctgagctgac 000240 000241 attcccacat ggcacccacc gcttgaggtc tagtggcagc tcctgccttt ggtggaggtg accatccttt agcacgctcc 000320 000321 agccccaccA CCCTTTCTGT CTCTGCTTAC CAACCTCATC CACAAGTTCT GCTCTGGCTG GCCCCTCATG CATTCAGCAT 000400 000401 TCTTCCTACA GGTacttact gaacacctac tgtgtaccag gcactgttcc aggcactggg agtacagtgc tgaacacaac 000480 000481 agacaaaaat ccctgccttc gcatatatca tctcgtttaa tcctcgagac agcttccatg aggtagcctc attatacaaa 000560 000561 taaggaaact aagagacata gagaacttaa gagacttgtc caaggttacc cagcaggtaa ggggatgtct ggattagaac 000640 000641 ctgggcagcc tggctttaga attcgaattg tcagctgcta ttactgCCCA TCAGTGGCGG AAGGACCCAG AGGTGAAGAC 000720 000721 TTGGCAACAG AGGCAGGGTG GCGTGGACAG GGGACAGATA GGCCTGGCCG GTGGTCATAC AGCCAGGATC AGGCCTTCTG 000800 000801 TGGGCTCCAC AGGGTGTGCT CCCAGGGCCG CCCCGCTGGC CTCTGGGCTG AGTTTCCTTG AGGTTGTCTG GATCCCAGAC 000880 000881 CCTCTGGCCT TCCCAGCTCA GCAGCTTCAG CCTGGGAGAG CCCGCTTTTC CTCAGCAGAC AGCTGATGAT CGTTGACTGG 000960 000961 GCTTGGTGGG AGGTAAGGAG GTAACCAGCA GGTTTTCTTT CTGTGATGGT AAGAGGCCGC CTTGGAAGCA GACAGCTGAG 001040 001041 AAAACACAAA GACCTGGGCT GGCTGGCCCC ACCCTTGGTC GAGCCGCTTC TGCCTGTGAA GTGTAAATGC AGGTGGTGTC 001120 001121 AAGCCGGCAG ACAGGCCCAG CTCCCTCTTC CCCTTGAGCA GGCAGGGTGA CGCCCCCTGC AGCAGGCCCG TGATTCAGTT 001200 001201 GCTCTGGCTG ATGAGGAGCC TGGGCCCGGG AGGAGTGTCG CACAGCCCCA GCCTGGTCCG TCCTCAGCCC TGGATTGACG 001280 001281 TCCATGCTGT CCTGGGACCG TTTCAGCCGC CTAGTGGGGA GTCTGCTTTC TCCTCCGTCC TGTGTCTTGG GCTCAGGCAT 001360 001361 GTGCCTGCTG CCCCTTTGTG GCCACAAGTA TGTATCGGGC CCAGGGTGGC ACTCGGGACC CTCCCCTGTT GGGCTTAGAG 001440 001441 ACATGGACGG CCCTTGCTGG CTGGAAGCTG CGGTGAGTGT GTGAAGGGCC CTCAGTCTTC CCTGAGGAAG GCCCTGCCTG 001520 001521 CTCTTGGCTC TCACTGCTCC CAGGCCATCT TCCATCCGCT TTCCCCAGGT GCCTCCGTTT CTCTCTGACT TCTTGCCTGT 001600 001601 TTTCCCTAAC TCTGAGAGAT TGCCTGCCTT CAAGTGCAGG AGAAAGCAGA CATCTTCCCT ACAAGCCCGA GACCTAGCCC 001680 001681 CCAGTAGAGC TGGCCAACCA CCTGCCACGG AGCAGGCCAC TGGTGCCTTG GCCAGAGTGC TCGTGGTGCC AGTCTGCTGC 001760 001761 GTCTCAGTCA CATTCCCCCT GCTTTGCTGC CCTCAAGAAG CCAGAGATGA CCTAGTGTCT GACACCTCTG AACAAAGGGG 001840 001841 CCTTTAGAGC CCCTTCCTCA ACTCCCTCAC CATCCCCCAT GCTCCCCAGC CTGCCCTGGT TGCGGTTGCG GCCACTTCCT 001920 001921 TTTGGGTGCC CCTCTGAGAT TCTGGACAGA GCCCAGGAGC CCCCAGGTTC CCATTGTGAT GCAAGGACAG AACAGAACCC 002000 002001 TGGGCCGCAG GCAGGTGGCT GGTGGGTATC CCGCCTCCCA CCCCCAGCAA ACACTGGCAA ACCCCACTCT CCCTGCATCA 002080 002081 GGGTCTGAGT GCCTGGCAGG GGCGGCAGTG GAGATGATCA AGGTTAGTGC GCCCAGCCCC ATGCTGAGGC AGCAGCCTTT 002160 002161 CTGGGGAGGG AGGGGGCGTG GAAGGAGACT TCAACCTTTT GAAGAGGAAG TCAGTTCACT TATGTCAGGG TAGGGAGAGT 002240 002241 AGGAATTACG TATTCTTTGA GACTGAAAAA TTACTggccg ggcgcagggg ctcacaacgg taatcccagc actttgggag 002320 002321 gctgaggcgg gaagactgct tgaggccagg aattcaaggc cagcttgggc aaaatggcaa gacccttcta tac |
Predicted Small Protein
Name | NONHSAT142791_smProtein_1283:1483 |
Length | 67 |
Molecular weight | 6971.0947 |
Aromaticity | 0.0757575757576 |
Instability index | 59.9515151515 |
Isoelectric point | 6.68206787109 |
Runs | 13 |
Runs residual | 0.0463618218109 |
Runs probability | 0.0425448072507 |
Amino acid sequence | MLSWDRFSRLVGSLLSPPSCVLGSGMCLLPLCGHKYVSGPGWHSGPSPVGLRDMDGPCWL EAAVSV |
Secondary structure | LLLHHHHHHHHLLLLLLLLEEELLLEEEELLLLLLEEELLLLLLLLLLLEEELLLLLLEE EEEEEL |
PRMN | - |
PiMo | - |