NONHSAT143193
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143193 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2608 nt |
Genomic location |
chr16+:67903863..67906470 |
Exon number |
1 |
Exons |
67903863..67906470 |
Genome context |
|
Sequence |
000001 GTGGTCCTGT GGGCCTCTGC AGTGGACGCA GAGGCACCTG CTTTCTGGCC TGGACTTTCC TGTCAGTTTC TCCTGCCTGT 000080
000081 TCAGGATGTC CTGCTCAGTG CCTGTGCCTG AAGAGGCACA GAATTCAGGA GGTCTCTGTA GGGAGCTCAT TGTTCACTTT 000160 000161 CTCAGGCAAA GGTAGTAAAC ACTGCTGCTT CCCACCGGCT TCAGGTTCTT CCTGGTGATT CTGTCCAATT TGGAGCTCCC 000240 000241 AAACAACTGA TTTGCCTCCT TGATGACGAT AATTCCCAGA AAGCAGGTGA TGTTAGAGAC AGTGCTGGTT AGCTAGGCTC 000320 000321 CTATTTCAAC TAGGTCTCAT CCTAGTTTTC TGCAGTTTGG CTGCAGGTTT CTTGCCCTTT TTTTTCATCT CAAATACTGT 000400 000401 TTATTACATG ACAGGAAACA TCATTGGATA GTGAACCTAT GTTTTCAAGA TTGTTTGCAG TTTTTTTGAT ACTCTATAAG 000480 000481 TTACTTGGTA AATACTATGG GATTCGTTTC AAAATTGTGA TCACTTGTGT CTGGAGATAT GTGCTTGGAG GCAGGTACAT 000560 000561 CCTCTGCTCT TTTGCTGTAG CTAAGGGTGA ATTATTGTGC AGTTTAAGCA CACATAGCAC ACATAGGCGT GGCTGATTGT 000640 000641 TGGCCTACAT GTGCCCAGGG CATTGTTTCA TACATTACAT CAATTCACAT TCACAAGTAC CCCTTGGCTA CACTGGGATT 000720 000721 TGAGTTCAGG ACAGTAGGGC CTGATCCTAA AGTCAACATT TTTTTGCCCT CTTCTCCTAC CACTGAATTC CCTTCCTGTT 000800 000801 TCTTGATCCC CTTACTGAAT CCTCTTTTCT CTCCTCATAG GCGGATGAAG ACCCCATCAT GGGGTTCCAC CAGATGTTCC 000880 000881 TATTAAAGAA CATCAACGAT GCTTGGGTTT GCACCAATGA CATGTTCAGG CTCGCCCTGC ACAACTTTGG CTGACCTCCT 000960 000961 CTCAGCTAGG CACTCACGCT GTTTCCTCCT CCCTCCTCTT CCCAATACTA TTCCCACTCC TCCAGATGCT CCAAATATCA 001040 001041 TGCACAAATG AGCAGGGCCG CGGTGGGAGT GGGCGCAGTG CGCTGCTGCC ACTGAGGTGT TGTGCATGAT GTTTGGATGC 001120 001121 TAGACTAGTT GCATCTGACG GGAGAAGTTT GTGTTGTACC AGCGCATGCC TTGGAAAGAC TTAAGTAATG CAAAAGGTTG 001200 001201 TCCttttttt tttttttttt tttttAATCT ACTGACAAGT TGCTCTAGTA ACCCAAAGAA GTGAAGGAGA AAGCAGCTGC 001280 001281 CTCACCGCCC AGACATTGAT TTGTTCAGAT GTTTCAATGC CTCATGATAC AATAAAACCA CAAAAATTTT CTTAACAGTT 001360 001361 TAAATTGTTT TAATTAGTTT ACTAGTTGGC TGGGCATCAG AAGCTACCCA GACCCGTTGT CTCTCTCATG TTTCACCCTC 001440 001441 CCACTTCTGC CCCAACTCTG AATACCTGTT GCAGGGAGAA ACTGCTGAAG CAGCACTCCC AGCTAGCCTC TCAGAAGCCG 001520 001521 TGTAGGGCAG TTCTCTCCCA CTCCACAGGG CGACTGGTCT TTGGAAAGCA GGCAGGAAGA GCTCAGGTCT GGCCTGAAGC 001600 001601 TTCTCTCACT GAAGCCTGTG CAGTCAGTTC TGATACCTCC TGTGACTTCT GCTCTGGGTA GGTTCAGGGC CCTAGTAGCA 001680 001681 GGAGAGATGA TCCTGAATCC TGTTGAAGCT GGAGAGGCCT TGGCAAAATG GCTCATCACG TTCAGGCCCT CCGGGCTGAG 001760 001761 TTGTCAGCAG TATCAAGGGA GGGGCCTGCT CTATCCCCAG AAGGATCAGG ATCATATCCA GGATGCCCCA CATACACCAA 001840 001841 GCCAGGCAGA GGGCAGCTCA GCTCCTGTCC CATCTGCTTT GGATATCTTT ACCCAAAGGC AGGTAACCCG AAGAGCCAGC 001920 001921 CTCCACTGCC CACAGAGCCA GGCCCAGTTG TGTTGGAGTA TAGGTCAGGA GCTGTGGAAG GAGGCAGTCT GTGAGGGACT 002000 002001 CATGCTTTAG GAGTCCTCAC CCCTCAGACT GCTGCAGGAC ATTGCCAGGC CTCTCTCCAC TTCCTTCCTC AGCATACAGA 002080 002081 CTTCATGCTA TCTTCCAATT CCGGGGAGTC TTAGCTATTA GGGCAGTTTC TGCTTCTCCA TTTTGGGGAC AAAGGCCTTG 002160 002161 CCCAGTACAA ATCTAGCCCC TTGTCCCACA GACTTCTGGA TGGTATAAAC CTAGTGGCAA TGTAGCAACC ATAGGCTAGA 002240 002241 ACCAAACCCA AGATTTGGGT CAGTGCCCTG TTAAGGGTTT TAGGATTGGT AAGGACACCA CAGCTAAATC TGACATGTAA 002320 002321 AAGGATACCC TTCCCCTGTC CCACTACGGG TGGAGGCTAA GGACCTCCTC AGATCCCACA GATTGCCTGG TGACATTGGG 002400 002401 CACAGGGCTG GATGGTGTGC TGTTTGAGAG GACAGCATGC TCAGGAGATT TCAGTGGGAA TGATCTCTAG GCTGATGTGT 002480 002481 ATTTGGGGAA GTGGGGGTGG GGAAGAGGTA GGTGCCTGCT GCCTCAAACC ACCTTGTGTA AAATCTGCAA TACGGCTTCT 002560 002561 TCCATGTACC TGTGCCTGAA CTGTCTGCAA TAAAGAAGAA TTTGTAAA |
Predicted Small Protein
Name | NONHSAT143193_smProtein_1727:1993 |
Length | 89 |
Molecular weight | 9111.2089 |
Aromaticity | 0.0681818181818 |
Instability index | 50.7193181818 |
Isoelectric point | 7.72918701172 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0311541488012 |
Amino acid sequence | MAHHVQALRAELSAVSREGPALSPEGSGSYPGCPTYTKPGRGQLSSCPICFGYLYPKAGN PKSQPPLPTEPGPVVLEYRSGAVEGGSL |
Secondary structure | LLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEEEELLLLL LLLLLLLLLLLLLEEEEEELLLEELLLL |
PRMN | - |
PiMo | - |