NONHSAT143226
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143226 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
1920 nt |
Genomic location |
chr16+:68261129..68263048 |
Exon number |
1 |
Exons |
68261129..68263048 |
Genome context |
|
Sequence |
000001 TGGGTAAGAT GGCTACATTT AAGGTGACTC TGAATGGTGG GGTTCTAGCT TGGTCACTTT CATTTCTTGC CATCATAAAA 000080
000081 ACTAGTAGGC TGTGGAGTGC GCTTCCTGTT TGTGTCATCT GGTCGTAGAA CCTTTTCCAA ACAGAAGCAT CTGCCTTTGG 000160 000161 CTGTTCTGTG ACCTTTGAAG CCAGTCTCAG TGGTTTAGGC AGCTTTGCAG TTCTAACTCT AGCTAGAGGC CAGGCTGTGT 000240 000241 GCAGAGCTAA AGCACAAATG AGCAGTACAT CAGCATGGGC AGAGAAAATA CAGGACTCCA GATGGGAAGG TTTTAAGAGT 000320 000321 CACACTGGCA TGGAAGGCTT ATCTGCCATT CTATTTATAG CCTGAAATGA TTCTGGCCTA CCCTGTCCTG TCTGTATGAT 000400 000401 CTAAAAACCA GCCTTTTCCC CAGAAGGCTC TGAGCACATC CAGAAGTGAT AACCTGACCC TCCACACCAA AGACACCCTG 000480 000481 GTGCTGCTGC TGGTGAGACT GGTGTCCAAG GCAGGGCCCA GCAGAAACTG CAGCCTGCTG TCTACCAAAG GAGGTACCCG 000560 000561 AGTTGGGTAC TTTAAAAAAA AAAAAAACCT GCCCTTACCC CTCTCCCTAA TGGGATTTTT TTTACCTGTT CCTGGGCCCA 000640 000641 TTACAGAGCC TCTGAAGTTT GCAGTATGCT TTCAAATGAA ATAATATACT TCCATTGATT CAGGAAGCAG ATTTTTTGAG 000720 000721 TGCCTATATG TGAGACAGTG TGCTGGTTGA AGGCCTGATG CTGTTATTCC AGGAGACTGC AGGCCCTTGA TGCCAGGACT 000800 000801 CTCTCTACTA AGGCCAGTTC AGGTCTGGGA AAGGGAGCTG GCCTATTGCC CACCACCTGT TGTCAGTAGG TTAGGAGCTG 000880 000881 TTGACTCAGG ATGAGGAAGT ATGGTCTTTA AAAAAAACAA AATATATTTT AGATTTCTCC CCTAAAGTTA GTTAGAGAAA 000960 000961 AAGGTCTATT CTTCAGCAGA TCACTGTGGC CCCTCTTGGA GCTGGGTGTT TTCAAATTTT CTTGAAAAGT GAGTTGTGTC 001040 001041 ACAGAATGTG GATAGTGAGA TTTGCTTCTG GGCCTGTGGT TGGACGCCCA CAGCTTCCTT TGGAGGGGCA AGAAGTTGGC 001120 001121 CTCTCGGTTG ACATTCCAGA GAAATGGCCA GACTTGCCCC TACCCTTTTG CCCCTGGTGT AGCTGCCTCA CATGAGGTTA 001200 001201 TTGCAAGAGT TCCCCTTGCA ATACCCTTTG TGCCCTCAAG AATTAAAAGC CTCTATGATC CAGAGTTGCT ATGCACCAAA 001280 001281 TTTTGATGCC TTCTAAATAC CTTGATGCCT GTAGCACTAG AAATGCTTTC CTATTTAAAA TAAACATTAA ATTTTAAAAT 001360 001361 AGAGCTTTGT ATACTATGTA AGCAGTTTTA TATCAGCTTT GTAAAAGCTT TGGTGTTAAG AGTCAATATT TTTTGGCTTT 001440 001441 GTAGATAAAG ACTTAAATTT TTGTGCAACA TAGTGGTGTT AAAGCACACA TCCATTGGAC TATGCAAATC AATTTCTACT 001520 001521 AGCAGCACTG AGCAACTGGG CACGTGCTAG TACGCACCCC CTCCTACTCT AACTGTGCTA GCTCTTGGGT TGAGGAATGG 001600 001601 AATGGGTAGC CTTCTGCTTA CTGGAGATGC ACAGAGAAAC ATGGCTGAAA ACAGCTTTAA AAAGAACATG TCTTTGGGTT 001680 001681 CATGTGTGGT GCTGCTGCCC GGGTGTAAAC TATCCCCACC CAGGGCCAGC CATTATCACC AGACCTCTTC TGGGCCTGGC 001760 001761 TGTGAAGCCC TGTTTTTGGT ATTCAGAATG GATCTTTAAG GCTCAGATGG GCTCAAATTG AAACCTTGTG TTTTATAAAA 001840 001841 TGGATGTTTA GTAAAGGAAC TGGTTCTCAG TTATGTTTAC AGCACTTGGA ATTGTGTGTT CTTGTACATT TTGTATTTTA 001920 |
Predicted Small Protein
Name | NONHSAT143226_smProtein_1601:1798 |
Length | 66 |
Molecular weight | 7014.1196 |
Aromaticity | 0.0615384615385 |
Instability index | 42.4815384615 |
Isoelectric point | 8.61151123047 |
Runs | 10 |
Runs residual | 0.00355769230769 |
Runs probability | 0.0338102808691 |
Amino acid sequence | MGSLLLTGDAQRNMAENSFKKNMSLGSCVVLLPGCKLSPPRASHYHQTSSGPGCEALFLV FRMDL |
Secondary structure | LLLEELLLHHHHHHHHHHHHHLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLHHHHEEEE EEELL |
PRMN | - |
PiMo | - |