NONHSAT143545
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143545 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
935 nt |
Genomic location |
chr16+:72088522..72091245 |
Exon number |
3 |
Exons |
72088522..72088556,72090060..72090142,72090429..72091245 |
Genome context |
|
Sequence |
000001 ACTGCTCTTC CAGAGGCAAG ACCAACCAAG ATGAGTGCCC TGGGAGCTGT CATTGCCCTC CTGCTCTGGG GACAGCTTTT 000080
000081 TGCAGTGGAC TCAGGCAATG ATGTCACGGA TATCGCAGAT GACGGCTGCC CGAAGCCCCC CGAGATTGCA CATGGCTATG 000160 000161 TGGAGCACTC GGTTCGCTAC CAGTGTAAGA ACTACTACAA ACTGCGCACA GAAGGAGATG GTAAGATGTG GACAACTGTC 000240 000241 TCCATGCCCT ACATACAACC CCCTTCTCTG ACATTTCCAT GATGGGTGGT GCTGAGGTGA TTCGCCAGAA AGTTCGTTGC 000320 000321 TCTCcttgga gccaggagat ttagattcta ataagcgttt tgtcgccagt agccatggcc ctttgggcag actaactttt 000400 000401 gtcagcctca agttttctgt tttgttaagg ggaggcgatg ccatgcagcc tacctcaTGT AAATCTCAGA GTCACATTTA 000480 000481 CATCTCCAGC AGATGTGGGA AAAGAAGGAA TGCTGATGAT GATGTCACCC Tcacctagtg agtcttgctg tcctggcact 000560 000561 gctctaaggg ctttatactt atttgctcac ttagtcctca cagtatccct ctgaacagag tttattgttt tcactttgct 000640 000641 gataaggaaa ctgaggcaca gacaggttga gtatcttgcc caaattcagg cagcctgtaa gaggcagagt caggatttga 000720 000721 acccTGAGCC CTCCCTGTAC TGCTTGGCTG TGACCGCCAT GACCACAGTG TGTTCTGCTG GGCTTAACTG GTGTCCAGGC 000800 000801 ACTTGGCTTC CAGCACAGCA ctctttccct tcctccttct catattctct ctcctttctc ccttcctgtc tgcctccttt 000880 000881 cttcttcttc tttttaattc ttctccttAA ATGCCTTCTC ACTCTGCTCT GGGTG |
Predicted Small Protein
Name | NONHSAT143545_smProtein_437:613 |
Length | 59 |
Molecular weight | 6209.3719 |
Aromaticity | 0.051724137931 |
Instability index | 74.2655172414 |
Isoelectric point | 6.68707275391 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0966812400636 |
Amino acid sequence | MPCSLPHVNLRVTFTSPADVGKEGMLMMMSPSPSESCCPGTALRALYLFAHLVLTVSL |
Secondary structure | LLLLLLLLLEEEEELLLLLLLLEEEEEEELLLLLLLLLLHHHHHHHHHHHHHEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i????????????????????????????????????????????????????????? |