NONHSAT143701
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143701 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3882 nt |
Genomic location |
chr16-:74705755..74712311 |
Exon number |
3 |
Exons |
74705755..74706436,74708858..74708998,74709253..74712311 |
Genome context |
|
Sequence |
000001 CCATCTATGC CGCCTGTTCT GATGACTGCC TTCCCTCACT GCCCATTTAG CAGGGATGGG CTACAAGTCA TTTCCCCTTA 000080
000081 GATGCCTGGA CACCACTTCT ATGTCCCTAC AACATACAAT Gggggatctt gttaggttta aggactcaga ctcacaggac 000160 000161 aggtctaggc cacacttgtc attcagttac ttagaaggat gtcagcagcg ccaaaccttt ccctccaggg tgagtcctcg 000240 000241 cagtcatcca ggagatactc tctttgtcag agccacaggt gctggagaaa gaggctccca ttaggtgggt gtgggtcatc 000320 000321 caggcttaga agcccatgac ctgcaggagt cagcatctct ggtaacaact ctgcaggcat gccttccagt gtttctgcaa 000400 000401 gtgacatgtg agttgctgtt ttaagagctg ccacatctgg gtatggtggc tcacgcctgt aatcccaaca cttagggagg 000480 000481 ctaaggcggg tggatcacct gaggtcagga gttcaagact agcctggcca acatagtgaa acactgtctc tactaaaaat 000560 000561 acaaaaaatt agccgggtgt ggtggcgcac gcctctagtc ccagctccta aggaggctga ggcaggagaa tcacttgaac 000640 000641 ccgggaggca gaggtttgca gtgagccgag atcgcgtggt tgaactccag cccgggcaac aacagcaaaa ctccatctcc 000720 000721 aaaaaaaaag aaaaaagaaa agaaaagagc tgctacatgg ccaggcatgg tggcttatgc ctgtaatccc cgcactttgg 000800 000801 aagggaaggc aggaggatca ctttgagccc aagagttcaa gaccagcctt ggcaacacag tgagacctcc ccctcttcaa 000880 000881 aaaatttaaa aatcagccag tcatggtggt gcacacctgt aattccagct actcaggaga gtgaggcagg aggaggatgc 000960 000961 ctagagccca ggaggtcaag gctgcaggga gctatgttta cgccactgta taccctagcc tgggcaacag aatgagaccc 001040 001041 tgtctcaaaa aataaaaaaG Aggctgggcg cggtggctca cacctgtaat cccagcactt tgggaggcca aggcaggtgg 001120 001121 atcatgaggt taggagatcg agaccatcct ggctaacaca gtgaaaccct gtctctacta aacaatacaa aaaattggcc 001200 001201 aggcgtggtg gcaggtgcct gtagtcccag ctactccgga ggctgaggca ggagaatggc atgaacccag gaggcagaac 001280 001281 ttgcagtgag ctgagattgc accactgctc tccaacctgg gcgacagagt gagactccgt ctcaaaaaat aaataaataa 001360 001361 ataaataaat aaGAAAAAtt tgctacaaag cattcccatc agctgtttac tgtgtagtcc tgttaccccc ttgatcctgc 001440 001441 ccagaagcaa tctaacaatc agcagtcatt tttattttca tcatcagcaa tgttactaag agccataggt gacagtctac 001520 001521 ctgtatcaga tttccagggg aacagagcta agaagttcac tggaagtcag attttcatac agaagaggaa aagattttgt 001600 001601 gaactcagtg tccacaATTC CCAAATGCTA AAAGAATTTT AGCAGTTTTC TTTGTCATCC ATAGACGGTT TTCTTTCTTC 001680 001681 CAGTCCTACG AGTGTCAGAG ACAGCCCTCA AATAATAGCA GACAGGCCTT TTTTGCCTTT CAGATGCCTT TCCCCCTCTG 001760 001761 CGATGGTGAT ATAAGTACTC CCAAAACACT GTTTCTACTA CTCTCACGCT CTTCATGCAG CCTGACTATA AGATGCGCTA 001840 001841 TTCCACCTTT CATCCCTGGT ATCCCATACG GCGCTAGATG TAAGAGAATG TCAGTGCTCA GGAAACGTGT GAGCAaatga 001920 001921 atgaatgaat gaatgaaAGG GGGATGAGCC ATCTAAGTGC CTTATCCCTT TTCTCACATT GCCCCTAGAT TTGGGTACCT 002000 002001 GGCTGAGTTT GGGGCTGGCA GCCTTCAGCA CACCAATGGT GTCAATGGCA GGTGTGCATG GGACAAGAAC ATATGCTGTC 002080 002081 ATGATTGTGC TACAGTTTCT TTAAGAACAC CAGGTGACCG CGCAGGCCTG GGGGGATGAC TCACACTCGT CACGCCAAAG 002160 002161 CCAAAGGATC AGGCTGACCC CCCATAAAGT CAGATAGCAC AGAGGGGATG CCCCCATGCC ATTTTTCCAT CTGCTTCTTT 002240 002241 GGGAAAAGGC GAGCCAGGCA GTGGCTCTAT GACCCCTCTC CACTCTCACT GAGTGGAGTT CAGTCCTCAA CTGAGAAACC 002320 002321 CCTACATTTT AACATAGTCA TACTGGCAAC AACTACAACT TAGCAGGTCT TACTGGTGCT TTATAACCAT TATCTCAAGT 002400 002401 AATCCCCCCT GTCATCGCCC CATTTTATAC AGAAGAAATC TCTTTGTGTT TCTCTTGGTC ACTGCACTGT GATAAGTTGA 002480 002481 ACCCATAATG TTAACCAATA AAGTAGCCAC ACAGACAGAA GTCACGACAG GAAATAAATC CCTAAGGTAA AAGACAATTC 002560 002561 CCTGGCAATT GTGTGTAGCA ACAATCCCTG CCCTTTACTC CTCTACCCAA GATCTTGCTT GTTTCTTTCT AAGTTGCCTC 002640 002641 TCTATCTAGC TTGCAGGATT TGAGTTGAGG AAAACACAGA CTTCCATGAG TTTGGGAACT ACGAGAGAAA AGACAGACAG 002720 002721 AGTCAAATCT ACAGCATATC TCTCACCTCA GGAACTGGAA GATGTATTTT ATCAATATGA TGTAAAGTCT GAAATATACA 002800 002801 GGTACACTCA CGTTCTGGTA CAGATTCTAA CTCAGATGTG CATAATAGGA AAACCCAAAT CAAACTCCTC CAAGGACCAC 002880 002881 CTAAACTCAA CTCTGTTGAA TGAAATTGGG TAGTAATCAA AAAATTCACT GAGTTTTCTG GCAGTGGCTA GAGGGACAGG 002960 002961 GGAAAGGGGA GACTAGTTAT GGTTGTTCAG TTTCTTGGTT TTCTTTTAGC TTTGGAATCG TCCTCTGGGA AATCGCCACT 003040 003041 GGAGATATCC CGTTTCAAGG CTGTAATTCT GAGAAGATCC GCAAGCTGGT GGCTGTGAAG CGGCAGCAGG AGCCACTGGG 003120 003121 TGAAGACTGC CCTTCAGAGC TGCGGGAGAT CATTGATGAG TGCCGGGCCC ATGATCCCTC TGTGCGGCCC TCTGTGGATG 003200 003201 AAATCTTAAA GAAACTCTCC ACCTTTTCTA AGTAGTGTAT CAAAATCTAA ACCAAGGAGT CTCTGGACAA GAAGCTGGGA 003280 003281 GAGGCACAAA CTGGACATCT CTCTCTCTCA TATCCTTCGG CATTGGGTTA TCTATGGGTG CAAGGAGTGG GCACGCTTCT 003360 003361 CTGTTACAAA TAGAAAACGA TTCCAGTCAT ACAGGACACA TCCCACTCCA AATGATATTT CCAAAAACAT ACCTCTGACA 003440 003441 GTAACTTTGA TAGATGGTTT GTCAAATGTA TCTTTCTGGg tatccacacc tcttggcaat gaaatttgca gctcctccct 003520 003521 tccataaatg aagtctcttt ccccaccatt tgaatctggg ctggcactgt gacttgattt gatcaataga atgtggaaga 003600 003601 agtgactgta tgccagttcc aagcctaggt ttcaagaggc cttataaatg tctgttggaa ccttacccag ccatgaacat 003680 003681 gttgagtgag catgctggag aatgagagac cacatgaagc agaaacatgc tttcctagct gaagtcatac tagcccaacc 003760 003761 aacatggcag ctaacacatg aatgaggcca atcaagacca gaagaaccac tcaagcagat cccagcccaa attgcccatt 003840 003841 cacacaatca ggagctaaat aaattactgt tgtcttaaca ct |
Predicted Small Protein
Name | NONHSAT143701_smProtein_2207:2362 |
Length | 52 |
Molecular weight | 5780.6586 |
Aromaticity | 0.117647058824 |
Instability index | 87.6509803922 |
Isoelectric point | 9.38287353516 |
Runs | 10 |
Runs residual | 0.0418365365948 |
Runs probability | 0.0489224518636 |
Amino acid sequence | MPPCHFSICFFGKRRARQWLYDPSPLSLSGVQSSTEKPLHFNIVILATTTT |
Secondary structure | LLLLEEEEEELLLLLHHHHEELLLLLLLLLEELLLLLLEEEEEEEEEELLL |
PRMN | - |
PiMo | - |