NONHSAT144074
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144074 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5330 nt |
Genomic location |
chr16-:84599208..84610702 |
Exon number |
2 |
Exons |
84599208..84602733,84608899..84610702 |
Genome context |
|
Sequence |
000001 GTGGGTTTCA TAGCTGTGTG TTTTCATTTG GCTCCTCTTC CTTGGGGATT GCCTTGTCTC CTAGCAAGAT TCAGGGTGCT 000080
000081 GGGGACTGTG GCTGTATTTC TTCAGCAGTT CAGAGTCTTT GGTTTATTGG TCATCATCAC CCACTTGTGG AAAAGACACA 000160 000161 TTCATGTGTC CAGCACATGT CTTGTCTATC CCCGGCTCCA TCTTATGCCT GCGGGAGGGG AGATTCTAGT CCCCACACCG 000240 000241 TGTTGTGAGG GTTTGGGAAG GACCTGAAGC CAGCAGGCAG CCTTCATTGT GAGAGCTATG CTCTGATCCC AAAGCTGACT 000320 000321 TTTCCATGCC AGGTTTCCCC ATTGCCCTAG GATCTGGTGT CCCTGGTGGA ACTTCGTCCC GTGTCTATGT GCTCTGGAGG 000400 000401 CTTAGGTGTA GGATCCCTGG ATGACTGGTG Gggaaaggct gggggaccct gttgtccagc cttcttcttt cacagaggtg 000480 000481 gaaaccaggg cccagagCCA TTAAATACTG CCTTCCGGGC ATTTCAGAGC CCGCTGCTTC TATTTTTCTA TTCTCAGTCT 000560 000561 GTCAGAGAGA CCAGTAAGTA CCAGAATTTT GACttcccag agcctaggag agtgtatggc atatgacagg tgtttattaa 000640 000641 tgtgtgttcg tgggaagaac aaatTGTGTC GCTTTCATTG TCTTTCAATA CAATGAAGAT CAGTTCCTCT CCTGGGCCCC 000720 000721 ACTTCATAGA AATATGCATT CCTGACTTCA CAAATGGAAC TGCCCAAGAA TCCCCACTCA TGTTTTCTCC CCGGAGCTTC 000800 000801 CCCTGCACCC ACATTCTCTG CATTGGTTAG GAATATCCTC ATAGGCGCAA CACTCCTGAA TAGCAGACCT TACACTTGTA 000880 000881 CCCCGACAGG CCTCCTTGTT CCCTGAAGCT AACCCTGGGC CTGGCTTTGG GGTTTGCAGC CGGATTTGTC ATCTTCTGTC 000960 000961 TGCCAGTTTC ACTGACTTGG TTATTCCAAG GAATTCCTGG GACTTCCCTT TGTTAAAAAA TAAACGTTAG GAATGAGAAG 001040 001041 AGGAACTAGC TACTGCCTGT GTCTTCACTC TGAGTGACTG AGGGAACTTC ATTAAATCTC AGATTCCCCT AACGATCCTG 001120 001121 AGAATGAAGG TGAACCCACA GTCCTGTAGA ACATTCTCTC TGACtgttga gcactccgct ttgtaccagg tgttctcatc 001200 001201 aagtgtgcaa gcccctttta tgctcatacg accctcccaa cagccctagg atgtgaagct gctattgtcc gcatttgcag 001280 001281 atgaggagac tcaggctcag ggaggttgag tCCCCAGGGA GGCTCAGGCC ACTGGAGATG CCTGTGGACA AGGGTGCCTG 001360 001361 TTTGTATTTG GCCTGGACCT GCTCCCAGCA TGCTGGGGTT TAAACCTGGG CAGTTGGGAG CCATTAAAAA ATGAAAAGGg 001440 001441 gtcaggtgtg gtggctcatg cctgtgatcc cagcactttg ggaggccaag ggggggagat cacttgaggc caggagttcg 001520 001521 agaccagtct ggccaacatg atgaaaccct gtctctaata aaaatacaaa aatgagccgg ccgtggtggt acgtgcctgt 001600 001601 aatcccagct acttcagagg ctgaggcagg agaattgctt gaacctggaa gtggaggttg tgctgagctg agattgcacc 001680 001681 actgcactcc agtctgggcg acagagtgag actccgtctc aaaaaatgaa aataaataaa aataaaaaTG AAAAGGATGg 001760 001761 gctgggcgtg gtgactcacc cctgtaatcc cagcactttg ggaggctggt ctcgaactcc tgacctcagg tgatctgcct 001840 001841 gcctcggcct ccaaagtgct gggatgacgg gcgtgagcca ccgcacctgg cctgaaccat tttaaagtgt acaattcagt 001920 001921 ggctttcaga acattcacag tgttgtgcaa gccctacctc tgtctggttc caaaactttt tcatcacccc aaaaggagaT 002000 002001 GGTGGCTCTT TCAAGACGcc agctttggca tcaactggac cttctggttg tctgacttcg gacaagcatt gtaatttcca 002080 002081 gcctttgttt cctcaccttt aaaatggaaa taatgttgat caccttacgg gCCTTTTTAA AAAGAACttg attgaggtat 002160 002161 gatgtatgta cctcaaaatc aagtcatcct aagtgtactt tttcagtact ttttcgtgaa tttgtggagt tgtgcaccca 002240 002241 ttaccacaat cccaatttta gaacgtctct atcatttcct gttcccatct ccagctctgt gtaaccacga gtctgctttc 002320 002321 tgtctgtatg ggtttgcctt ttttagacat ttataccaat ggcagctgac agtacatggt cttcatgcct ggcttctttc 002400 002401 actcagcatc ctgtttccga ggttcatcca tgtagttgcg tgtggcagcg cttcattcct ctctgtggct gaggaatatt 002480 002481 ccattgtgtg gacggaccgt gttttgataa tccactcctc tgttgatgga cataggggtt gcttccacct tCCATGATTC 002560 002561 ATATTTACTA CTGTGTGTCA TTCTCAGTAC TGTGGCACTG TGCTGGTACA CATAAGTGCT TAATAATTGT GGTTAgccgg 002640 002641 gcgtggtggc tcacgcctgt agtgccaaca ccttgggagg ccaagctggg cggatcactt aaggccagga gtttgagacc 002720 002721 agcctggcca atgtggcgaa accctgcttc tactaaaaat acaaaaaata gctgggtgtg gtggcagacg cctgtagttc 002800 002801 gagctacttg ggaggctgag acatgagaat ggcttgaacc ctgggggcag aggttgctgt gagccaagat tgcgccactg 002880 002881 cactccagcc tgggcaacag gcttttctct caagaaaaag aaaaaTGGTG GTCATTGTTT ATGTTATTTC CTTATGGGCT 002960 002961 TTTTTTTTTA ATGTGGATGA TTTTCTTACC TTTAGACGTG TTATTTGTGG TTTTGATAGC TTTTTTTTGT CAAGCTGTCC 003040 003041 GTCATCGTTC TGAAATTTTG TTTGTTAAAG TCTTATGATC CACATATGGC AGTAACTGTG TATCATCATG GCTTAAGGGT 003120 003121 GTCTGATAAG CCAGGTCACC TGGTTCCCtc attcatgcca caagcgttta ctgagtgcat catgggtgcc TGCGGGTTCT 003200 003201 ATGGGTGAAA CCTGTGTACT GCAAGAGGAA AGACTGACTG CATCCATTTT GCTGAGCCCT GTAGCCCCAC AGCCTGGCGT 003280 003281 GGTATTTGTT GAAAGAAGGC AGAGCCTCTA CCCTCGTGTA ACTCAGTGCG GGTGGAGAGC CCATGGCAGA CCCAGGACTG 003360 003361 GAGGCTCCTG CGTCATTAGG AAcattggtg gctgaagctt gcttgtccca gctggcgaga gccaattacg cctgtctcct 003440 003441 tccacctcca cgtatggtga catcactttg atagcttgac gtcagccact gggggactat ttacatcatg gatatgggca 003520 003521 aaagacacca atctgagctt ttgtcctttt cTTTTTTTTG GAGTGCCTGC ACACCCGTGA GCCTTTCCAA CCTCGTAACC 003600 003601 TATTATTTTC CTGACGAGAT AGTTttttac agatgagaaa gttgaggcac agagaattga agggacttgg ccaaggtaac 003680 003681 aGCCCAAATT CAAGCCCCAG CTTCCTCGGG CCATCCCCAC GGACATGGGA AGACGCAGCA TCAGATCTGC CCCACTCCCT 003760 003761 CCTCCCAGTC AGGTTTTTTC TGCCAGATGA CTCTGCTGTT CAATTTCCAT TGACTCTGCT GCTGAATTTC CATTGACTGA 003840 003841 CTCTGCTGCT GAATTTCCAT TTCCATCTCT CATCAGGGTT TTCAGTGCTT TGCTTCCCAG TGTGTTGCCT GAGCCACCCT 003920 003921 CACATCCTGT GCCTTCCTTC TTAATAGGAA CGCTGTGTTT TCCTTTGTTC TTGCAGAATT TCGCTAAGGA GTTTGTGATC 004000 004001 AGTGATCGGA AGGAGCTGGA GGAAGATTTC ATCAAGAGCG AGCTGAAGAA GGCGGGGGGA GCCAATTACG ACGCCCAGAC 004080 004081 GGAGTAACCC CAGCCCCCGC CACACCACCC CTTGCCAAAG TCATCTGCCT GCTCCCCGGG GGAGAGGACC GCCGGCCTCA 004160 004161 GCTACTAGCC CACCAGCCCA CCAGGGAGAA AAGAAGCCAT GAGAGGCAGC GCCCGCCACC CTGTGTCCAC AGCCCCCACC 004240 004241 TTCCCGCTTC CCTTAGAACC CTGCCGTGTC CTATCTCATG ACGCTCATGG AACCTCTTTC TTTGATCTTC TTTTTCTTTT 004320 004321 CTCCCCCTCT TTTTTGTTCT AAAGAAAAGT CATTTTGATG CAAGGTCCTG CCTGCCATCA GATCCGAGGT GCCTCCTGCA 004400 004401 GTGACCCCTT TTCCTGGCAT TTCTCTTCCA CGCGACGAGG TCTGCCTAGT GAGATCTGCA TGACCTCACG TTGCTTTCCA 004480 004481 GAGCCCGGGC CTATTTTGCC ATCTCAGTTT TCCTGGACCC TGCTTCCTGT GTACCACTGA GGGGCAGCTG ggccaggagc 004560 004561 tgtgcccggt gcctgcagcc ttcataagca cacacgtcca ttccctacta aggcccagac ctcctggtat ctgccccggg 004640 004641 ctccctcatc ccacctccat ccggagttgc ctaagatgca tgtccAGCAT AGGCAGGATT GCTCGGTGGT GAGAAGGTTA 004720 004721 GGTCCGGCTC AGACTGAATA AGAAGAGATA AAATTTGCCT TAAAACTTAC CTGGCAGTGG CTTTGCTGCA CGGTCTGAAA 004800 004801 CCACCTGTTC CCACCCTCTT GACCGAAATT TCCTTGTGAC ACAGAGAAGG GCAAAGGTCT GAGCCCAGAG TTGACGGAGG 004880 004881 GAGTATTTCA GGGTTCACTT CAGGGGCTCC CAAAGCGACA AGATCGTTAG GGAGAGAGGC CCAGGGTGGG GACTGGGAAT 004960 004961 TTAAGGAGAG CTGGGAACGG ATCCCTTAGG TTCAGGAAGC TTCTGTGTAA GCTGCGAGGA TGGCTTGGGC CGAAGGGTTG 005040 005041 CTCTGCCCGC CGCGCTAGCT GTGAGCTGAG CAAAGCCCTG GGCTCACAGC ACCCCAAAAG CCTGTGGCTT CAGTCCTGCG 005120 005121 TCTGCACCAC ACATTCAAAA GGATCGTTTT GTTTTGTTTT TAAAGAAAGG TGAGATTGGC TTGGTTCTTC ATGAGCACAT 005200 005201 TTGATATAGC TCTTTTTCTG TTTTTCCTTG CTCATTTCGT TTTGGGGAAG AAATCTGTAC TGTATTGGGA TTGTAAAGAA 005280 005281 CATCTCTGCA CTCAGACAGT TTACAGAAAT AAATGTTTTT TTTGTTTTTC |
Predicted Small Protein
Name | NONHSAT144074_smProtein_386:625 |
Length | 80 |
Molecular weight | 8812.8349 |
Aromaticity | 0.177215189873 |
Instability index | 47.7026582278 |
Isoelectric point | 7.72576904297 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0332417979476 |
Amino acid sequence | MCSGGLGVGSLDDWWGKAGGPCCPAFFFHRGGNQGPEPLNTAFRAFQSPLLLFFYSQSVR ETSKYQNFDFPEPRRVYGI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLHHHHHHHHHLLLEEEEEEEEEEE ELLEEELLLLLLLLEELLL |
PRMN | - |
PiMo | - |