NONHSAT144081
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144081 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3732 nt |
Genomic location |
chr16+:84696934..84700665 |
Exon number |
1 |
Exons |
84696934..84700665 |
Genome context |
|
Sequence |
000001 TACCCGGATG GCATCCCCTT CAGGATGTGG AGCTGGCCTG CACTGACTCC TGCAAACAGT TCCTAAAGCA GGTGTCAGGG 000080
000081 TCGCTTGCCC TTTAAGAGGG CTCTTAGCTG CCCGAGTGGA TGAGAAACGT GCAGAACTAT GGGAGGATAG GAGTGTGATG 000160 000161 GGTTTTAAGC ATGAGCCAAG GAAGGCATGA ATGAGCTGTA CCTCACCCAG CATCCGATGG CAGAGATCAG TAAACTTCAA 000240 000241 GATGTGCTTC ATCTTCAATC CTAGTCTAAC ACCAGTCTTC CTGCAGACAG TTCCGAGAGC AGGTCTCGAT GTCACTTGCC 000320 000321 CTTTAAGAGG GCTCTCAGCT GCTCGAGTGG ATGAGGATCA ATGTGTTAAG ATTGATATTA GACTAGGAAA AAAATCTTAG 000400 000401 TTAACTTTAA TTTCCATTTC TTCTGCTTCT TTGCTGCCCC TCCTTTCCCT TCCCTTCAGG GTTTACTGTG GTTCTCACTG 000480 000481 GTCTGTTTAT GTAGCCATCC AGAAGAGATG AGAGCATTTT GGGGACTGAA AGCTTCAATA GCCAACTTAC TGCCCTCTGT 000560 000561 GGTTAGTGAG GAGGGCAGTC TGCATGTTCA GCTAGCTAGT TATTTGCATG TGAAGTCCCT GGAGGCTTAC AAACTGTTGA 000640 000641 GAGGTTCTGC GAGGCATACA AACAAACAGA CCAAAAGGCT GGAAACTCTG CTTGGAGCTC TGCAGCATTC CGGTGTATGA 000720 000721 AAGGTTCCGA GAAGTCTCAA CCCAGCATTT CCAAACTTCT TTGAGCCTAA AAGTCGTTTG TCTCATACCT AGTCCCAGAC 000800 000801 CCCCACAAAA CATGTTTTGC AGAACTTCTG CCAACTTTGG GATAGCTTAC CCCCTTCCTA TTCGGGAAAG GTTTTATTGC 000880 000881 TTGTAGACCC CTCAGAAGGC AGGGTAGGGT GTACGTGGGC TGTTCTCCCC ATCTCAGCCT GGGTCATGAA CAAACGGGCA 000960 000961 GTTGTTTGGC CTGAATCTCG GGGCAAGTTG GGGAGAGCAC ATAGAAAGAC TCTGTGAGTG ATTTGGGGAG TGGGATAGCT 001040 001041 TTGACCTTGG AGAGAGGAGA GCCATTGGTT TTCAGCCTAA GCCAGCTCTT TTATGTTTTG CTTCTGGGAC TTGTCCCTGG 001120 001121 AAATGTGTGA GCTTCTGGCC TCTATTCTGA TTTTCTTGTG CCTCATGAGT TACATACGAC GTCCTGCGCT TCATATTTTG 001200 001201 TGGTGTCTCT CCTGATACTA TGAAGGTGGT TTGTAATTGA CATGGCTTTG ACCCTAATAT TACTAAGGTT GGGACCACCC 001280 001281 TTTTAAAGGG AGGATAAACA AGTTTCATCT TGTGGGTCAA CTTCTAATAT TTGATGGTGG CTACACTGTG ACAAGAAAGG 001360 001361 TTTTTGAGCT TGTTGGGGTC AGTGGATGGG CACAAGGGCA CCCAGTGGTG GTGCCCGGGC CAGGTTTTTG TTACTTGTCT 001440 001441 TTTTAAGTTG AAAATTCACC CTACTGTGCA TGAAAATGGA ACTGAAAATG GAAGAGACCA TGCCTGGGCA ACATGGCAAA 001520 001521 ACCCCATCTC TACAAAAAAA TTACAAAAGA TTAGCCAGGG ATGGTGGGGC ATGCAGTAGT CCCAGCTGCT TAGGAGGCTG 001600 001601 AGGTGGGAGA ATCACCTGAG CCTGGGAGGT TGAGGCTGCA GTGAGCTATG ACCACACCAC TGCACTCTAA CCTGGGTGAC 001680 001681 GGAGTGAGAC CCTGTCTCAA AAGAATAAAA TGTTTTTTAA CTCAGATGGG CAGAGTTTGG GCTGTGCTTA TGCAGTGGCC 001760 001761 ATTTGAACCG CACAGTCACG AATGTGGGGT TTTAAACTAG AGTGATGAAG GCACAGGTGC TTGCAGGCTG CCATTTTGAG 001840 001841 AGGGAAACAG CCACACATGT CATCATGTTA AACTTTCAGT GTTTCAAGCT ATTCTGCTTG AATTTTGAAG ACACCTGGAT 001920 001921 CTTTTTTTTT TTTTAACATT TCAAAATAAG CATGGCAGGC TTCTATTGAG GTTTGGACTT CTCTCATTTC TAAAGAATTA 002000 002001 GAGTTGTAAC TTCATATTAG TTGTAAGTTT GGGGTTTGGT CCTCACCCAA GTTGGAAAGC TGTTTGCTTA AGACATAGAT 002080 002081 GTATTATAAT AATAGAAGGG AGGGAGTAGA AAGCTGATGA ACCCTTGTTA CTTATAGCAA ACTTCCTGCT GTTTTAAATG 002160 002161 CACAGAGATT ATTTTATCAA CTGTGGTTAG CACGCAATTG GTATTTTTAT TGTTCTGCCA TTTTATTGAG GCTATCAAGT 002240 002241 GGGACTTCAG ACCTGGCTCT GAGCAGGACC ACACGTGTGT ATTTATATTG AGTGCCCTCA CTCATGATAA GGTGACTTCA 002320 002321 TGGAGACCCA GAAACTCACC CTAAGGGGTG TTCACCTTTG AGGTGGGCAT CCAGATGCTG AGGGGAAGTG GGGTCCATCC 002400 002401 TCTGAGGTCC AGGGGCCTAC TTTGTGAGCT CAGTTGTGTT CACCTGTGGT TCAGTGTACC TCGGCCCCTA AGCCAAGTGA 002480 002481 TCGTTCAGTG ACTTGCAGCA ATGTGGGAAG TGAGGGGACC CCTGCCACAC CCCCCACCAC CCCCTGTAGA GTCACTGACC 002560 002561 TTCATCCTTC ACCCTGGTCC TCCATGGTGC AGCAGCATCT CATGGGCCTT GTGGCTGTCA GAGCCCGTGG TTGGAACCCC 002640 002641 GTCCACTGGT CCCAAACCTG GAGGGGCAGC TGCAGATGAG GTTTAGACCT CCTGGTGTCT CCGTGGATTC TGAGTGCCCA 002720 002721 GGAGGGGAGG GGAGGGGGTG GCATCCTGGC CTCTAGGATA AATGCCTGGA GTATAGGGCA GCGCCACGGG CACTTGGAGA 002800 002801 CCCTGTCCTG CGCATCTGCC AAGCCTGGCA GTTTTTAGAG TTTTTTGAAA TGTTTTGATA CTTTTTGATA CAATTTGCTA 002880 002881 ATAACTGTTT TGTAGAATGC CTGCCGGGGT TTTCCACCTC ATCCCTTTCC TCCGGCCCCT TGATTTGTGC TGGACAACAA 002960 002961 ATGGCAGCAC CAGGACCTCG CCTCATGTGG CTTTGTCTTG GATCTTGCCC TTCTCCATCG CTGATGTGAT ACAGCTCTAG 003040 003041 AATTTCGTGA AGTTGCATGC AAAGTTGCAT GCAGCCCGTG GGTATGACTG TCTCAGGCCC CCAGCTCATT TGCCAAGAGG 003120 003121 AAACCTTAAC CCCCCTGAGA GGGTCTGCGT TTCTTCTAGA GCTCCTACCT CAGTGGTGTG CACAGAGTTG GAGACACCTG 003200 003201 AGGGCTGGTC CACGTCTCAC CTTTGCCATA CGGGTCATTT CTTGATCAAA TATATGACTG GGGTCCTGGT TTACTCCCGC 003280 003281 CCACCCTTTC TTTTAAAGTA TTCTTAACAT GAAATCCACA AAAGCGGAAA CAATGAACCA TTCTTGCACT TTACAGAATC 003360 003361 ATTGTCCTTA GCTTTAGAGG TTGTTAATTT CTTGTTTTTA ACATGAACAG AATGTGTGGT TCTGAAGGTG TGTGGGGGTC 003440 003441 TCAAGAAATT GTCCTTTGGG GCCGGGCGCA GTGGCTCACG CCTGTACTCC CAGCACTCTG GGAGGCCAAG GGGGACGGAT 003520 003521 CACCTGAGGT CAAGAGTTTG AGACCACCCT GACCAACATG GTGAAACCCC GTCTCTACTA AAATACAAAA ATTAGGCAGT 003600 003601 CGTGGTCGCC TGTAATCTCA GCTCTTCCGG AGGCTGAGGC AGGAGAATCG CTTGAACCCA GGAGGCAGAG GTTGCAGTGA 003680 003681 GCCGAGGTTG CGCCACTGCA CTCCAGCCTG GGTGACCGAG TAAGACTGTC TC |
Predicted Small Protein
Name | NONHSAT144081_smProtein_3056:3244 |
Length | 63 |
Molecular weight | 6955.1635 |
Aromaticity | 0.0645161290323 |
Instability index | 61.6677419355 |
Isoelectric point | 8.71099853516 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0438379556026 |
Amino acid sequence | MQSCMQPVGMTVSGPQLICQEETLTPLRGSAFLLELLPQWCAQSWRHLRAGPRLTFAIRV IS |
Secondary structure | LLLLLLLLLEEELLLLEEELLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLEEEEEEE EL |
PRMN | - |
PiMo | - |