NONHSAT144606
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144606 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5701 nt |
Genomic location |
chr16+:90004596..90010296 |
Exon number |
1 |
Exons |
90004596..90010296 |
Genome context |
|
Sequence |
000001 agacagctta caccattatt tctgcatatc aagagacttt tatactttca ctaatttgct actgctatct ggaaggcaga 000080
000081 gccaggtgta caggatggaa catgaaggtg gactaggagc gtgaccactg aagcacagca tcacagggag atggtaaggc 000160 000161 ctccggataa ctaatgatta atgatattca tatataatca tgtctatgat ctatatctag tataactcct gttgttttat 000240 000241 atattttatt atactggaac agctcgtgcc ctcggtctct tgcctcggca cctggatggc ttgccgccca caACCAGGGG 000320 000321 cttttcttcc cctcaggtcc acatctgctt tgacagcaaa tctggccagc tgcaccttca gaacacgccc acagcccagc 000400 000401 acccctcatg tctgctgctg cctcgggtct tcctcgtccc gtccgtgcga ttgtctcctc actgggctcc cACAGCTGCC 000480 000481 TGGCCGCTCC TCACATGCAA TTTGGCATCT GCTCCCGTGC CACGCTGTCC TTCATATCCT CTTGTTATAT ATGCCCCGTC 000560 000561 CACACCACGT CCCTAATGTT CTAGAACATT GGGGCCCGGG GAATGCCCTC CACTTGAGTG TCCTCCCTGC AGATATCCGA 000640 000641 CGGCATCACC CTAGGGGACC CTTCCTGGCC CCCCGTGCTC TGAACTCTCC TCCCAGAGCT GCTTTCTGTG CAGCACTCAG 000720 000721 CACCCACTTC AGGAGACTGT GCCTTCAGGG GAGGGGTCAA CAAAGAGGGT CGAATGGCAG GAATGGGCCT AATTAAGGGG 000800 000801 TCCTGGAGCA ctgaaggtga aggggtggga gggctggacc ctggtgagaa ctggagctac aggagaggcc accccggctg 000880 000881 agctgaggtc tctgaagggt aagaacccca tcagagcaga gggagccccg gagccaacac cctgacctct ctctcctccg 000960 000961 tcccccggcc tccaggcacc ctgacttctc tctcctccgc cctccagcct cttgctgagc tcagctggaa gtcaggggac 001040 001041 gtccaggtca gcctccaggc agagaggagg gccaggaggc gtgagaggtg ggtctggggc cagtggaaGG TGAGAACCTG 001120 001121 GCCCAGGTCT AATGTGTCAT TTAGTCCCCA AGtgtctcct ccacggggtc agctccacaa gggacttctg tgttgttccc 001200 001201 gttggacccc ttaacctaga agaatgcctg actcatggta ggtaaagatt tccggaaaaa atgGCTTGAA TTGTGGTCTT 001280 001281 TCATGTAACA ACAGACTGGA CATGGAGCAG TTCCAGGGTG GGGCTGTGTG TTGGTCTCAT CCTTACTGGG TGAGCCCCTT 001360 001361 CGTCCGAGAA AACGGCCCCT GCTCCAGTTG TTAGAAAACC GCCTTTACAg gccaggtgtg gtggctcaca cctgtaatcc 001440 001441 cagcacttca ggaggccaag gcagacaggt catgaggtca ggaaatggag accatcctgg ctaacaaggt gaaaccccgt 001520 001521 aactactaaa aatacaaaaa aattagctgg gcgtggtggc gggcgccttt agtcccaact actcgggagg ctgaggcaga 001600 001601 agaatcactt gaacccagga ggtggaggtt gcagtgagct gagatcccgc cactgcacta cagcccgggt gacagagtaa 001680 001681 gactctgtct caaaaaaaaa aaaaatgtga ttgctatgta aaatgattgt gtgccacaga gatgaccagg tttcttgtgg 001760 001761 atttcatctt aactgtggct gtcctaagac ttttgtcatc cacagataac tgttgtcttg tttCACCAtt tttttttttg 001840 001841 ttttgagacg aagtttcgct ctgttgccca ggctggagtg cagtggcgcg atctcggctc actgcaatct ccgttccctg 001920 001921 ggttcaagcg attctcctgc ctcagcctcc tgagtagctg gggttacagg catgcgccac cacacccagc taattttttt 002000 002001 gtatttttag tagagacggg agttcaccat gttggtcagg ctggtctcaa actcctgacc tcgtgatctg cctgcctcgg 002080 002081 cctcccaaag tgctgggatt gcaggtgtga gccactgtgc ctggccacat tactgattct ttttgttttg tttttcagag 002160 002161 tcaagaaaac cttttttctt ttgagctatt tacagctttt agcagttgag taaagtacac ccctgtgacc aaaacttggt 002240 002241 gcatttttct ttctctacct gagttctcca gattttggaa actgtctgtg agtattcttT TTTATTTATT TATTTAtttt 002320 002321 taaaatttca gtaggtttta gctggtgttt ggttacatga atgagttctt tagtggtgtt ttctgagatt ttggtccatc 002400 002401 cattacctga gcagtataca ctgtatccaa tatgtagcct ttatccctaa ccctctccca ccctttcccc tgagttccca 002480 002481 aactccttca tatcattatt attattgtta ttattattat tgaaacagtg tctccctctg tcacccaggc tggagtgcag 002560 002561 tggcacgatc tcacctcatt gcaacctcca cctcctgagt tcaagcagtt ctcctgcctc agtctcctgg gtagctggga 002640 002641 ttacaggcac acaccaccac acctggctaa tttttgtgtt tcttagtaga gatggagttt caccttgttg gccaggctgg 002720 002721 tcttgaattc ctgatctcaa gtgatctgcc cgctggcttc caaaatgctg gaattacagg tgtgagccac catacctggc 002800 002801 ctattggatc attcttaagc ctttgcatcc tcatagctta gctcccattt atgattgaga atataggatg tttgctttac 002880 002881 cattAACGTA TTCTTTtctt ctcttttttt tttttttttt ttttttgaga tggagttttg ctcttgttgc ccaggctgga 002960 002961 gtgcaatggc gtggtcctgg tccactgcaa cctccacctc ccgtgttcaa gcgattctcc tgcctcagcc tcctaagtag 003040 003041 ctggaattac aggcacctgc caccacaccc ggctagtttt tgtatttgta tttttattta atttaattta tttatttatt 003120 003121 ttgagacgag tctcgctctg tctcccaggc tggagtgcag tggtgcgatc tcggctcact gcaagctccg cctcccgggt 003200 003201 tcacgccatt ctcctgcctc agcctcctga gtagctggga ctacaggcgc ccaccaccgt gcccggctaa ttttctgtat 003280 003281 ttttagtaga gacggggttt caccgtgtta gccaggatgg tctcaatctc ctgaccttgt gatccgcccg cctcggcctc 003360 003361 ccaaagtgct gggattacag gcctgagcca ccccgccggg cccacactaa tactttcaaa tttgtctttt gtttttctga 003440 003441 cctggactca atgaaattgc tactaacttt ttcccgaggc ccagaaagtt gaggttattc tttgtaacac aggtgagaac 003520 003521 attgtgtcag actgccaggg gcttcctgct ctgtaactaa agatgctttg agtctaacat ctggatagat cgtgtccaac 003600 003601 aataaacttc gtttttcttc tgttttcata gaaatacctc ttattaaaaa tctgttcacc ttcctcatat acataagttt 003680 003681 agcccatctg caacctcctg ttatgggaaa tagctgttta acggaactga tcttgtctca ggaccaggaa atcactacaa 003760 003761 agatatgtga cagtgtatct aaatttgttc tttcctgtct atcccaatgt gtcttttttt tttttttttt tgagacagag 003840 003841 tcttgctgtt gtctcccagg ctgaagtgca gcgatctcag ctcactgcaa cctccgcctc ccgtgttgaa gcgattctcc 003920 003921 tgcctcagcc tcctgagtag ctgggattac aggcatgctc caccacaccc agataatttt tgtattttta gtagagatga 004000 004001 ggtttcacca tgttggtcag ggtggtctcg aactcctgcc ctcgtgatcc gcccacttcg gccccccaaa gtgtgggatt 004080 004081 acaggtgtga gccactgcgc ccggcccaga gggatctttt gaaaacaaaa ttataccact tctctgctca caatccttca 004160 004161 atggagagac cgaccacacc aagtgctggt gtggacactg aggtaccgcc ggagcactca cacctcccag caggaacatg 004240 004241 gaaaggcaca accgccatgg gagaaagctt catgcgtcct agggagtaaa aacactgcac gtaacccagc cgttcggttg 004320 004321 ctaaatattg tcccggagaa tgaaagcatt atctccacac agtgatgcac acgcaaatgt ttatagtagc tttattcata 004400 004401 atagcaaaca ctggaaacag cccagacgtt catcaacagg tggatggata gacagtgtgg tcatccatgc atactcagga 004480 004481 ataagagggg taacccacag acatgtgctg ccacatagat atgtctcaga ataagtattt ttagtgaaaa aagctataga 004560 004561 tgaaaaaggc ctacatacga tgtgattcca cctgtataca attagagaaa tgcaccttat tgacagaaag cagctcggtg 004640 004641 gtgtctgggg acagagctgg gttgcagcag gttgcaaagg gcacaggaaa tatttgagga taatggatag ctttttattc 004720 004721 ttttttacga attgtgattt atttattctt tttcactttt gtggatacat ttatggagta catgagatat tttgatacag 004800 004801 gcatgcagtg tgtaataatc acatctggtt aaatgaggta tccatcacct caaacattta gcctttcttt gtattacggt 004880 004881 ccagttatac ttctttagtt atttaaaaat atataataaa ctattgtaga ctatagtcac tctgttgtac taccaactat 004960 004961 tagattttat tcattctatc taactatatt tttgcattca ttaaccatcc ccacatctcc ctccaccttt cccagcctcg 005040 005041 ggaaactatc catgagttta actctatgcc catgagttta attgttttaa ttttcttttt tttttttttt ttgttttaga 005120 005121 tggagtctta ctctgtcgcc caggctggag tgcagtggca tgatctcggc tcactgcaac ctctgtctcc caggttcaag 005200 005201 caattctcct gcctcagccc cctgagtacc tggctaattt ttgtattttt agtagagaca gggtttcact atgttggcca 005280 005281 agctggtctt gaactcctga cctcgtgatc cccccgcctt ggcctcccaa aatactggaa ttacaggcgt gagccaccac 005360 005361 gcccagccAA tttttttttt tttttttttg agaaggactc ttgctatttc tcccaggtta ggtggagagc agtggcgcca 005440 005441 tctcggctca ctgcaacctc cgcctcccgg gttcacgcca ttctcctgcc tcagcctccc gtgtagctgg gactacaggt 005520 005521 gcccgccacc atgcccagct aattttttgt atttttagta gagatggggt ttcaccgtgt taaccaggat agtctcgatc 005600 005601 caccagcctc ggcctcccaa agtgctggga ttacaggcgt gagccactgc gcccggcccc ggccaattgt tttaattttc 005680 005681 ttttagcctc cacaaataaa t |
Predicted Small Protein
Name | NONHSAT144606_smProtein_2867:3100 |
Length | 78 |
Molecular weight | 9019.673 |
Aromaticity | 0.246753246753 |
Instability index | 58.5051948052 |
Isoelectric point | 9.89080810547 |
Runs | 10 |
Runs residual | 0.00621118012422 |
Runs probability | 0.0286345168699 |
Amino acid sequence | MFALPLTYSFLLFFFFFFFLRWSFALVAQAGVQWRGPGPLQPPPPVFKRFSCLSLLSSWN YRHLPPHPASFCICIFI |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLEELLLLLLLLLLLLLLLEEHHHHHLLLL LLLLLLLLLLEEEEEEL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiii |